data_3NY8 # _model_server_result.job_id ZAekCi0LF570earswypNEw _model_server_result.datetime_utc '2024-11-24 05:52:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 3NY8 # _exptl.entry_id 3NY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3S)-1-[(7-methyl-2,3-dihydro-1H-inden-4-yl)oxy]-3-[(1-methylethyl)amino]butan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NY8 _cell.length_a 40.711 _cell.length_b 76.148 _cell.length_c 174.207 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C17 H27 N O2' _chem_comp.formula_weight 277.402 _chem_comp.id JRZ _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3S)-1-[(7-methyl-2,3-dihydro-1H-inden-4-yl)oxy]-3-[(1-methylethyl)amino]butan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 JRZ sing 250 n n C1 C5 JRZ sing 251 n n N1 C13 JRZ sing 252 n n N1 C15 JRZ sing 253 n n O1 C10 JRZ sing 254 n n O1 C11 JRZ sing 255 n n C2 C3 JRZ sing 256 n n O2 C12 JRZ sing 257 n n C3 C4 JRZ sing 258 n n C4 C5 JRZ doub 259 n y C4 C10 JRZ sing 260 n y C5 C6 JRZ sing 261 n y C6 C7 JRZ sing 262 n n C6 C8 JRZ doub 263 n y C8 C9 JRZ sing 264 n y C9 C10 JRZ doub 265 n y C11 C12 JRZ sing 266 n n C12 C13 JRZ sing 267 n n C13 C14 JRZ sing 268 n n C15 C16 JRZ sing 269 n n C15 C17 JRZ sing 270 n n C1 H1 JRZ sing 271 n n C1 H1A JRZ sing 272 n n N1 HN1 JRZ sing 273 n n C2 H2 JRZ sing 274 n n C2 H2A JRZ sing 275 n n O2 HO2 JRZ sing 276 n n C3 H3 JRZ sing 277 n n C3 H3A JRZ sing 278 n n C7 H7 JRZ sing 279 n n C7 H7A JRZ sing 280 n n C7 H7B JRZ sing 281 n n C8 H8 JRZ sing 282 n n C9 H9 JRZ sing 283 n n C11 H11 JRZ sing 284 n n C11 H11A JRZ sing 285 n n C12 H12 JRZ sing 286 n n C13 H13 JRZ sing 287 n n C14 H14 JRZ sing 288 n n C14 H14A JRZ sing 289 n n C14 H14B JRZ sing 290 n n C15 H15 JRZ sing 291 n n C16 H16 JRZ sing 292 n n C16 H16A JRZ sing 293 n n C16 H16B JRZ sing 294 n n C17 H17 JRZ sing 295 n n C17 H17A JRZ sing 296 n n C17 H17B JRZ sing 297 n n # _atom_sites.entry_id 3NY8 _atom_sites.fract_transf_matrix[1][1] 0.024563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JRZ A 1 1203 1203 JRZ JRZ . E 4 OLA A 1 1204 1204 OLA OLA . F 5 OLC A 1 1205 1205 OLC OLC . G 5 OLC A 1 1206 1206 OLC OLC . H 6 PGE A 1 1207 1207 PGE PGE . I 7 HOH A 1 1208 1208 HOH HOH . I 7 HOH A 2 1209 1209 HOH HOH . I 7 HOH A 3 1210 1210 HOH HOH . I 7 HOH A 4 1211 1211 HOH HOH . I 7 HOH A 5 1212 1212 HOH HOH . I 7 HOH A 6 1213 1213 HOH HOH . I 7 HOH A 7 1214 1214 HOH HOH . I 7 HOH A 8 1215 1215 HOH HOH . I 7 HOH A 9 1216 1216 HOH HOH . I 7 HOH A 10 1217 1217 HOH HOH . I 7 HOH A 11 1218 1218 HOH HOH . I 7 HOH A 12 1219 1219 HOH HOH . I 7 HOH A 13 1220 1220 HOH HOH . I 7 HOH A 14 1221 1221 HOH HOH . I 7 HOH A 15 1222 1222 HOH HOH . I 7 HOH A 16 1223 1223 HOH HOH . I 7 HOH A 17 1224 1224 HOH HOH . I 7 HOH A 18 1225 1225 HOH HOH . I 7 HOH A 19 1226 1226 HOH HOH . I 7 HOH A 20 1227 1227 HOH HOH . I 7 HOH A 21 1228 1228 HOH HOH . I 7 HOH A 22 1229 1229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JRZ . . . D 3 1.285 0.331 51.536 1 50.59 ? C1 JRZ 1203 A 1 HETATM 2 N N1 JRZ . . . D 3 3.401 8.236 53.102 1 50.86 ? N1 JRZ 1203 A 1 HETATM 3 O O1 JRZ . . . D 3 3.104 4.717 50.478 1 52.47 ? O1 JRZ 1203 A 1 HETATM 4 C C2 JRZ . . . D 3 1.83 1.052 52.74 1 50.77 ? C2 JRZ 1203 A 1 HETATM 5 O O2 JRZ . . . D 3 3.517 8.359 50.405 1 50.97 ? O2 JRZ 1203 A 1 HETATM 6 C C3 JRZ . . . D 3 2.762 2.135 52.24 1 50.96 ? C3 JRZ 1203 A 1 HETATM 7 C C4 JRZ . . . D 3 2.123 2.498 50.876 1 51.34 ? C4 JRZ 1203 A 1 HETATM 8 C C5 JRZ . . . D 3 1.274 1.454 50.482 1 50.85 ? C5 JRZ 1203 A 1 HETATM 9 C C6 JRZ . . . D 3 0.545 1.565 49.305 1 50.91 ? C6 JRZ 1203 A 1 HETATM 10 C C7 JRZ . . . D 3 -0.4 0.445 48.893 1 51.65 ? C7 JRZ 1203 A 1 HETATM 11 C C8 JRZ . . . D 3 0.659 2.695 48.503 1 51.86 ? C8 JRZ 1203 A 1 HETATM 12 C C9 JRZ . . . D 3 1.493 3.743 48.89 1 52.11 ? C9 JRZ 1203 A 1 HETATM 13 C C10 JRZ . . . D 3 2.215 3.658 50.09 1 52.05 ? C10 JRZ 1203 A 1 HETATM 14 C C11 JRZ . . . D 3 2.949 6.053 49.986 1 51.43 ? C11 JRZ 1203 A 1 HETATM 15 C C12 JRZ . . . D 3 3.618 7.065 50.957 1 51.04 ? C12 JRZ 1203 A 1 HETATM 16 C C13 JRZ . . . D 3 2.986 7.036 52.381 1 50.48 ? C13 JRZ 1203 A 1 HETATM 17 C C14 JRZ . . . D 3 1.465 7.034 52.305 1 50.32 ? C14 JRZ 1203 A 1 HETATM 18 C C15 JRZ . . . D 3 3.4 8.086 54.546 1 50.2 ? C15 JRZ 1203 A 1 HETATM 19 C C16 JRZ . . . D 3 4.607 8.814 55.119 1 49.85 ? C16 JRZ 1203 A 1 HETATM 20 C C17 JRZ . . . D 3 2.143 8.723 55.13 1 50.65 ? C17 JRZ 1203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #