data_3NY8 # _model_server_result.job_id j860PDmytH-isPXljcRwhA _model_server_result.datetime_utc '2024-11-24 06:08:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 3NY8 # _exptl.entry_id 3NY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NY8 _cell.length_a 40.711 _cell.length_b 76.148 _cell.length_c 174.207 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 415 n n C10 C9 OLC doub 416 n n C10 C11 OLC sing 417 n n C9 C8 OLC sing 418 n n C17 C16 OLC sing 419 z n C11 C12 OLC sing 420 n n C8 C7 OLC sing 421 n n C24 C22 OLC sing 422 n n C24 O25 OLC sing 423 n n C16 C15 OLC sing 424 n n C12 C13 OLC sing 425 n n C7 C6 OLC sing 426 n n C15 C14 OLC sing 427 n n C13 C14 OLC sing 428 n n C6 C5 OLC sing 429 n n C5 C4 OLC sing 430 n n C4 C3 OLC sing 431 n n C3 C2 OLC sing 432 n n C2 C1 OLC sing 433 n n C21 C22 OLC sing 434 n n C21 O20 OLC sing 435 n n C1 O19 OLC doub 436 n n C1 O20 OLC sing 437 n n C22 O23 OLC sing 438 n n C18 H18 OLC sing 439 n n C18 H18A OLC sing 440 n n C18 H18B OLC sing 441 n n C10 H10 OLC sing 442 n n C9 H9 OLC sing 443 n n C17 H17 OLC sing 444 n n C17 H17A OLC sing 445 n n C11 H11 OLC sing 446 n n C11 H11A OLC sing 447 n n C8 H8 OLC sing 448 n n C8 H8A OLC sing 449 n n C24 H24 OLC sing 450 n n C24 H24A OLC sing 451 n n C16 H16 OLC sing 452 n n C16 H16A OLC sing 453 n n C12 H12 OLC sing 454 n n C12 H12A OLC sing 455 n n C7 H7 OLC sing 456 n n C7 H7A OLC sing 457 n n C15 H15 OLC sing 458 n n C15 H15A OLC sing 459 n n C13 H13 OLC sing 460 n n C13 H13A OLC sing 461 n n C6 H6 OLC sing 462 n n C6 H6A OLC sing 463 n n C14 H14 OLC sing 464 n n C14 H14A OLC sing 465 n n C5 H5 OLC sing 466 n n C5 H5A OLC sing 467 n n C4 H4 OLC sing 468 n n C4 H4A OLC sing 469 n n C3 H3 OLC sing 470 n n C3 H3A OLC sing 471 n n C2 H2 OLC sing 472 n n C2 H2A OLC sing 473 n n C21 H21 OLC sing 474 n n C21 H21A OLC sing 475 n n C22 H22 OLC sing 476 n n O25 HO25 OLC sing 477 n n O23 HO23 OLC sing 478 n n # _atom_sites.entry_id 3NY8 _atom_sites.fract_transf_matrix[1][1] 0.024563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JRZ A 1 1203 1203 JRZ JRZ . E 4 OLA A 1 1204 1204 OLA OLA . F 5 OLC A 1 1205 1205 OLC OLC . G 5 OLC A 1 1206 1206 OLC OLC . H 6 PGE A 1 1207 1207 PGE PGE . I 7 HOH A 1 1208 1208 HOH HOH . I 7 HOH A 2 1209 1209 HOH HOH . I 7 HOH A 3 1210 1210 HOH HOH . I 7 HOH A 4 1211 1211 HOH HOH . I 7 HOH A 5 1212 1212 HOH HOH . I 7 HOH A 6 1213 1213 HOH HOH . I 7 HOH A 7 1214 1214 HOH HOH . I 7 HOH A 8 1215 1215 HOH HOH . I 7 HOH A 9 1216 1216 HOH HOH . I 7 HOH A 10 1217 1217 HOH HOH . I 7 HOH A 11 1218 1218 HOH HOH . I 7 HOH A 12 1219 1219 HOH HOH . I 7 HOH A 13 1220 1220 HOH HOH . I 7 HOH A 14 1221 1221 HOH HOH . I 7 HOH A 15 1222 1222 HOH HOH . I 7 HOH A 16 1223 1223 HOH HOH . I 7 HOH A 17 1224 1224 HOH HOH . I 7 HOH A 18 1225 1225 HOH HOH . I 7 HOH A 19 1226 1226 HOH HOH . I 7 HOH A 20 1227 1227 HOH HOH . I 7 HOH A 21 1228 1228 HOH HOH . I 7 HOH A 22 1229 1229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 5 3.975 27.299 45.73 1 69.01 ? C18 OLC 1205 A 1 HETATM 2 C C10 OLC . . . F 5 4.262 31.873 53.229 1 69.11 ? C10 OLC 1205 A 1 HETATM 3 C C9 OLC . . . F 5 5.474 32.135 53.764 1 69.98 ? C9 OLC 1205 A 1 HETATM 4 C C17 OLC . . . F 5 3.47 26.222 46.716 1 68.89 ? C17 OLC 1205 A 1 HETATM 5 C C11 OLC . . . F 5 3.614 30.497 53.394 1 68.21 ? C11 OLC 1205 A 1 HETATM 6 C C8 OLC . . . F 5 5.692 32.057 55.311 1 70.5 ? C8 OLC 1205 A 1 HETATM 7 C C24 OLC . . . F 5 8.572 26.539 63.77 1 72.83 ? C24 OLC 1205 A 1 HETATM 8 C C16 OLC . . . F 5 2.818 26.707 48.029 1 69.07 ? C16 OLC 1205 A 1 HETATM 9 C C12 OLC . . . F 5 2.78 29.959 52.201 1 68.01 ? C12 OLC 1205 A 1 HETATM 10 C C7 OLC . . . F 5 4.592 32.697 56.237 1 70.57 ? C7 OLC 1205 A 1 HETATM 11 C C15 OLC . . . F 5 3.385 28.005 48.667 1 69.06 ? C15 OLC 1205 A 1 HETATM 12 C C13 OLC . . . F 5 3.54 29.263 51.019 1 68.01 ? C13 OLC 1205 A 1 HETATM 13 C C6 OLC . . . F 5 5.076 33.651 57.381 1 70.97 ? C6 OLC 1205 A 1 HETATM 14 C C14 OLC . . . F 5 2.675 28.602 49.912 1 68.45 ? C14 OLC 1205 A 1 HETATM 15 C C5 OLC . . . F 5 5.449 33.015 58.756 1 71.17 ? C5 OLC 1205 A 1 HETATM 16 C C4 OLC . . . F 5 4.485 33.281 59.933 1 71.39 ? C4 OLC 1205 A 1 HETATM 17 C C3 OLC . . . F 5 4.707 32.52 61.249 1 71.65 ? C3 OLC 1205 A 1 HETATM 18 C C2 OLC . . . F 5 5.919 31.555 61.3 1 72.4 ? C2 OLC 1205 A 1 HETATM 19 C C21 OLC . . . F 5 6.794 28.382 63.266 1 73.6 ? C21 OLC 1205 A 1 HETATM 20 C C1 OLC . . . F 5 6.106 30.68 62.554 1 73.3 ? C1 OLC 1205 A 1 HETATM 21 C C22 OLC . . . F 5 7.411 27.017 62.857 1 73.29 ? C22 OLC 1205 A 1 HETATM 22 O O19 OLC . . . F 5 6.819 31.338 63.562 1 74.06 ? O19 OLC 1205 A 1 HETATM 23 O O25 OLC . . . F 5 8.815 25.153 63.888 1 72.61 ? O25 OLC 1205 A 1 HETATM 24 O O23 OLC . . . F 5 7.668 26.9 61.473 1 72.67 ? O23 OLC 1205 A 1 HETATM 25 O O20 OLC . . . F 5 6.582 29.36 62.243 1 73.71 ? O20 OLC 1205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #