data_3NY8 # _model_server_result.job_id ywKu8Xa2sU9b5O2r5-RXTA _model_server_result.datetime_utc '2024-11-24 05:41:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 3NY8 # _exptl.entry_id 3NY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NY8 _cell.length_a 40.711 _cell.length_b 76.148 _cell.length_c 174.207 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 479 n n C1 C2 PGE sing 480 n n C1 H1 PGE sing 481 n n C1 H12 PGE sing 482 n n O1 HO1 PGE sing 483 n n C2 O2 PGE sing 484 n n C2 H2 PGE sing 485 n n C2 H22 PGE sing 486 n n O2 C3 PGE sing 487 n n C3 C4 PGE sing 488 n n C3 H3 PGE sing 489 n n C3 H32 PGE sing 490 n n C4 O3 PGE sing 491 n n C4 H4 PGE sing 492 n n C4 H42 PGE sing 493 n n O4 C6 PGE sing 494 n n O4 HO4 PGE sing 495 n n C6 C5 PGE sing 496 n n C6 H6 PGE sing 497 n n C6 H62 PGE sing 498 n n C5 O3 PGE sing 499 n n C5 H5 PGE sing 500 n n C5 H52 PGE sing 501 n n # _atom_sites.entry_id 3NY8 _atom_sites.fract_transf_matrix[1][1] 0.024563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JRZ A 1 1203 1203 JRZ JRZ . E 4 OLA A 1 1204 1204 OLA OLA . F 5 OLC A 1 1205 1205 OLC OLC . G 5 OLC A 1 1206 1206 OLC OLC . H 6 PGE A 1 1207 1207 PGE PGE . I 7 HOH A 1 1208 1208 HOH HOH . I 7 HOH A 2 1209 1209 HOH HOH . I 7 HOH A 3 1210 1210 HOH HOH . I 7 HOH A 4 1211 1211 HOH HOH . I 7 HOH A 5 1212 1212 HOH HOH . I 7 HOH A 6 1213 1213 HOH HOH . I 7 HOH A 7 1214 1214 HOH HOH . I 7 HOH A 8 1215 1215 HOH HOH . I 7 HOH A 9 1216 1216 HOH HOH . I 7 HOH A 10 1217 1217 HOH HOH . I 7 HOH A 11 1218 1218 HOH HOH . I 7 HOH A 12 1219 1219 HOH HOH . I 7 HOH A 13 1220 1220 HOH HOH . I 7 HOH A 14 1221 1221 HOH HOH . I 7 HOH A 15 1222 1222 HOH HOH . I 7 HOH A 16 1223 1223 HOH HOH . I 7 HOH A 17 1224 1224 HOH HOH . I 7 HOH A 18 1225 1225 HOH HOH . I 7 HOH A 19 1226 1226 HOH HOH . I 7 HOH A 20 1227 1227 HOH HOH . I 7 HOH A 21 1228 1228 HOH HOH . I 7 HOH A 22 1229 1229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . H 6 0.13 26.245 55.28 1 67.66 ? C1 PGE 1207 A 1 HETATM 2 O O1 PGE . . . H 6 1.45 26.356 54.739 1 68.68 ? O1 PGE 1207 A 1 HETATM 3 C C2 PGE . . . H 6 0.243 26.359 56.795 1 67.55 ? C2 PGE 1207 A 1 HETATM 4 O O2 PGE . . . H 6 -0.978 26.873 57.327 1 67.13 ? O2 PGE 1207 A 1 HETATM 5 C C3 PGE . . . H 6 -1.713 25.951 58.138 1 67.07 ? C3 PGE 1207 A 1 HETATM 6 C C4 PGE . . . H 6 -3.187 26.308 58.008 1 67.55 ? C4 PGE 1207 A 1 HETATM 7 O O4 PGE . . . H 6 -7.143 23.639 58.565 1 71.18 ? O4 PGE 1207 A 1 HETATM 8 C C6 PGE . . . H 6 -6.137 24.474 59.156 1 69.61 ? C6 PGE 1207 A 1 HETATM 9 C C5 PGE . . . H 6 -5.196 25.045 58.111 1 68.89 ? C5 PGE 1207 A 1 HETATM 10 O O3 PGE . . . H 6 -3.99 25.418 58.782 1 68.13 ? O3 PGE 1207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #