data_3NY9 # _model_server_result.job_id AZkMXD3XqgMxnPqHCAH-Ow _model_server_result.datetime_utc '2024-11-13 08:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 3NY9 # _exptl.entry_id 3NY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.395 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 4-({(2S)-2-hydroxy-3-[(1-methylethyl)amino]propyl}oxy)-3-methyl-1-benzofuran-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NY9 _cell.length_a 40.58 _cell.length_b 75.9 _cell.length_c 174.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C18 H25 N O5' _chem_comp.formula_weight 335.395 _chem_comp.id JSZ _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 4-({(2S)-2-hydroxy-3-[(1-methylethyl)amino]propyl}oxy)-3-methyl-1-benzofuran-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 JSZ doub 250 n n C1 O2 JSZ sing 251 n n C1 C4 JSZ sing 252 n n N1 C15 JSZ sing 253 n n N1 C16 JSZ sing 254 n n C2 O2 JSZ sing 255 n n C2 C3 JSZ sing 256 n n O3 C4 JSZ sing 257 n y O3 C8 JSZ sing 258 n y C4 C5 JSZ doub 259 n y O4 C12 JSZ sing 260 n n O4 C13 JSZ sing 261 n n C5 C6 JSZ sing 262 n n C5 C7 JSZ sing 263 n y O5 C14 JSZ sing 264 n n C7 C8 JSZ doub 265 n y C7 C12 JSZ sing 266 n y C8 C9 JSZ sing 267 n y C9 C10 JSZ doub 268 n y C10 C11 JSZ sing 269 n y C11 C12 JSZ doub 270 n y C13 C14 JSZ sing 271 n n C14 C15 JSZ sing 272 n n C16 C17 JSZ sing 273 n n C16 C18 JSZ sing 274 n n N1 HN1 JSZ sing 275 n n C2 H2 JSZ sing 276 n n C2 H2A JSZ sing 277 n n C3 H3 JSZ sing 278 n n C3 H3A JSZ sing 279 n n C3 H3B JSZ sing 280 n n O5 HO5 JSZ sing 281 n n C6 H6 JSZ sing 282 n n C6 H6A JSZ sing 283 n n C6 H6B JSZ sing 284 n n C9 H9 JSZ sing 285 n n C10 H10 JSZ sing 286 n n C11 H11 JSZ sing 287 n n C13 H13 JSZ sing 288 n n C13 H13A JSZ sing 289 n n C14 H14 JSZ sing 290 n n C15 H15 JSZ sing 291 n n C15 H15A JSZ sing 292 n n C16 H16 JSZ sing 293 n n C17 H17 JSZ sing 294 n n C17 H17A JSZ sing 295 n n C17 H17B JSZ sing 296 n n C18 H18 JSZ sing 297 n n C18 H18A JSZ sing 298 n n C18 H18B JSZ sing 299 n n # _atom_sites.entry_id 3NY9 _atom_sites.fract_transf_matrix[1][1] 0.024643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JSZ A 1 1203 1203 JSZ JSZ . E 4 OLC A 1 1204 1204 OLC OLC . F 5 HOH A 1 1205 1205 HOH HOH . F 5 HOH A 2 1206 1206 HOH HOH . F 5 HOH A 3 1207 1207 HOH HOH . F 5 HOH A 4 1208 1208 HOH HOH . F 5 HOH A 5 1209 1209 HOH HOH . F 5 HOH A 6 1210 1210 HOH HOH . F 5 HOH A 7 1211 1211 HOH HOH . F 5 HOH A 8 1212 1212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JSZ . . . D 3 2.017 0.433 53.623 1 55.43 ? C1 JSZ 1203 A 1 HETATM 2 N N1 JSZ . . . D 3 2.585 8.406 52.111 1 52.98 ? N1 JSZ 1203 A 1 HETATM 3 O O1 JSZ . . . D 3 1.234 -0.427 53.987 1 59.98 ? O1 JSZ 1203 A 1 HETATM 4 C C2 JSZ . . . D 3 3.3 0.345 55.803 1 63.67 ? C2 JSZ 1203 A 1 HETATM 5 O O2 JSZ . . . D 3 3.165 0.794 54.448 1 60.57 ? O2 JSZ 1203 A 1 HETATM 6 C C3 JSZ . . . D 3 3.721 1.505 56.681 1 65.73 ? C3 JSZ 1203 A 1 HETATM 7 O O3 JSZ . . . D 3 1.295 0.486 51.24 1 50.44 ? O3 JSZ 1203 A 1 HETATM 8 C C4 JSZ . . . D 3 1.79 1.125 52.333 1 52.63 ? C4 JSZ 1203 A 1 HETATM 9 O O4 JSZ . . . D 3 1.968 5.008 49.979 1 48.99 ? O4 JSZ 1203 A 1 HETATM 10 C C5 JSZ . . . D 3 2.013 2.545 51.97 1 54.26 ? C5 JSZ 1203 A 1 HETATM 11 O O5 JSZ . . . D 3 3.395 8.051 49.412 1 52.03 ? O5 JSZ 1203 A 1 HETATM 12 C C6 JSZ . . . D 3 2.534 3.726 52.744 1 53.87 ? C6 JSZ 1203 A 1 HETATM 13 C C7 JSZ . . . D 3 1.63 2.695 50.627 1 49.58 ? C7 JSZ 1203 A 1 HETATM 14 C C8 JSZ . . . D 3 1.215 1.405 50.276 1 51.06 ? C8 JSZ 1203 A 1 HETATM 15 C C9 JSZ . . . D 3 0.752 1.131 48.994 1 47.62 ? C9 JSZ 1203 A 1 HETATM 16 C C10 JSZ . . . D 3 0.706 2.158 48.05 1 43.95 ? C10 JSZ 1203 A 1 HETATM 17 C C11 JSZ . . . D 3 1.117 3.445 48.39 1 43.97 ? C11 JSZ 1203 A 1 HETATM 18 C C12 JSZ . . . D 3 1.586 3.723 49.675 1 46.35 ? C12 JSZ 1203 A 1 HETATM 19 C C13 JSZ . . . D 3 3.172 5.64 49.528 1 46.34 ? C13 JSZ 1203 A 1 HETATM 20 C C14 JSZ . . . D 3 3.398 6.937 50.309 1 45.58 ? C14 JSZ 1203 A 1 HETATM 21 C C15 JSZ . . . D 3 2.314 7.168 51.358 1 46.06 ? C15 JSZ 1203 A 1 HETATM 22 C C16 JSZ . . . D 3 2.628 8.142 53.572 1 55.67 ? C16 JSZ 1203 A 1 HETATM 23 C C17 JSZ . . . D 3 2.957 9.432 54.317 1 53.58 ? C17 JSZ 1203 A 1 HETATM 24 C C18 JSZ . . . D 3 1.308 7.564 54.074 1 55.98 ? C18 JSZ 1203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #