data_3NY9 # _model_server_result.job_id mI2Wsz5b1ieVtKSWVe5d-Q _model_server_result.datetime_utc '2024-11-13 08:02:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ny9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 3NY9 # _exptl.entry_id 3NY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NY9 _cell.length_a 40.58 _cell.length_b 75.9 _cell.length_c 174.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 364 n n C10 C9 OLC doub 365 n n C10 C11 OLC sing 366 n n C9 C8 OLC sing 367 n n C17 C16 OLC sing 368 z n C11 C12 OLC sing 369 n n C8 C7 OLC sing 370 n n C24 C22 OLC sing 371 n n C24 O25 OLC sing 372 n n C16 C15 OLC sing 373 n n C12 C13 OLC sing 374 n n C7 C6 OLC sing 375 n n C15 C14 OLC sing 376 n n C13 C14 OLC sing 377 n n C6 C5 OLC sing 378 n n C5 C4 OLC sing 379 n n C4 C3 OLC sing 380 n n C3 C2 OLC sing 381 n n C2 C1 OLC sing 382 n n C21 C22 OLC sing 383 n n C21 O20 OLC sing 384 n n C1 O19 OLC doub 385 n n C1 O20 OLC sing 386 n n C22 O23 OLC sing 387 n n C18 H18 OLC sing 388 n n C18 H18A OLC sing 389 n n C18 H18B OLC sing 390 n n C10 H10 OLC sing 391 n n C9 H9 OLC sing 392 n n C17 H17 OLC sing 393 n n C17 H17A OLC sing 394 n n C11 H11 OLC sing 395 n n C11 H11A OLC sing 396 n n C8 H8 OLC sing 397 n n C8 H8A OLC sing 398 n n C24 H24 OLC sing 399 n n C24 H24A OLC sing 400 n n C16 H16 OLC sing 401 n n C16 H16A OLC sing 402 n n C12 H12 OLC sing 403 n n C12 H12A OLC sing 404 n n C7 H7 OLC sing 405 n n C7 H7A OLC sing 406 n n C15 H15 OLC sing 407 n n C15 H15A OLC sing 408 n n C13 H13 OLC sing 409 n n C13 H13A OLC sing 410 n n C6 H6 OLC sing 411 n n C6 H6A OLC sing 412 n n C14 H14 OLC sing 413 n n C14 H14A OLC sing 414 n n C5 H5 OLC sing 415 n n C5 H5A OLC sing 416 n n C4 H4 OLC sing 417 n n C4 H4A OLC sing 418 n n C3 H3 OLC sing 419 n n C3 H3A OLC sing 420 n n C2 H2 OLC sing 421 n n C2 H2A OLC sing 422 n n C21 H21 OLC sing 423 n n C21 H21A OLC sing 424 n n C22 H22 OLC sing 425 n n O25 HO25 OLC sing 426 n n O23 HO23 OLC sing 427 n n # _atom_sites.entry_id 3NY9 _atom_sites.fract_transf_matrix[1][1] 0.024643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JSZ A 1 1203 1203 JSZ JSZ . E 4 OLC A 1 1204 1204 OLC OLC . F 5 HOH A 1 1205 1205 HOH HOH . F 5 HOH A 2 1206 1206 HOH HOH . F 5 HOH A 3 1207 1207 HOH HOH . F 5 HOH A 4 1208 1208 HOH HOH . F 5 HOH A 5 1209 1209 HOH HOH . F 5 HOH A 6 1210 1210 HOH HOH . F 5 HOH A 7 1211 1211 HOH HOH . F 5 HOH A 8 1212 1212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 4 12.582 24.272 39.021 1 75.94 ? C18 OLC 1204 A 1 HETATM 2 C C10 OLC . . . E 4 3.985 27.828 37.308 1 61.04 ? C10 OLC 1204 A 1 HETATM 3 C C9 OLC . . . E 4 3.154 26.799 37.108 1 56.9 ? C9 OLC 1204 A 1 HETATM 4 C C17 OLC . . . E 4 11.168 23.885 38.632 1 79.55 ? C17 OLC 1204 A 1 HETATM 5 C C11 OLC . . . E 4 5.416 27.808 36.801 1 70.77 ? C11 OLC 1204 A 1 HETATM 6 C C8 OLC . . . E 4 1.722 26.838 37.609 1 46.97 ? C8 OLC 1204 A 1 HETATM 7 C C24 OLC . . . E 4 -4.108 26.473 26.575 1 71.95 ? C24 OLC 1204 A 1 HETATM 8 C C16 OLC . . . E 4 10.26 25.103 38.481 1 80.92 ? C16 OLC 1204 A 1 HETATM 9 C C12 OLC . . . E 4 6.223 26.653 37.404 1 71.05 ? C12 OLC 1204 A 1 HETATM 10 C C7 OLC . . . E 4 0.822 25.98 36.717 1 54.11 ? C7 OLC 1204 A 1 HETATM 11 C C15 OLC . . . E 4 9.157 24.844 37.461 1 72.73 ? C15 OLC 1204 A 1 HETATM 12 C C13 OLC . . . E 4 7.194 26.033 36.395 1 66.75 ? C13 OLC 1204 A 1 HETATM 13 C C6 OLC . . . E 4 0.497 26.646 35.378 1 53.82 ? C6 OLC 1204 A 1 HETATM 14 C C14 OLC . . . E 4 8.648 26.149 36.855 1 73.55 ? C14 OLC 1204 A 1 HETATM 15 C C5 OLC . . . E 4 -0.111 25.653 34.384 1 57.43 ? C5 OLC 1204 A 1 HETATM 16 C C4 OLC . . . E 4 0.711 25.47 33.105 1 58.04 ? C4 OLC 1204 A 1 HETATM 17 C C3 OLC . . . E 4 0.319 26.456 32.01 1 57.65 ? C3 OLC 1204 A 1 HETATM 18 C C2 OLC . . . E 4 0.727 25.965 30.627 1 59.91 ? C2 OLC 1204 A 1 HETATM 19 C C21 OLC . . . E 4 -2.218 25.73 28.044 1 64.36 ? C21 OLC 1204 A 1 HETATM 20 C C1 OLC . . . E 4 -0.471 25.416 29.884 1 64.41 ? C1 OLC 1204 A 1 HETATM 21 C C22 OLC . . . E 4 -2.82 26.912 27.273 1 69.97 ? C22 OLC 1204 A 1 HETATM 22 O O19 OLC . . . E 4 -0.982 24.374 30.265 1 67.82 ? O19 OLC 1204 A 1 HETATM 23 O O25 OLC . . . E 4 -4.263 27.152 25.32 1 73.12 ? O25 OLC 1204 A 1 HETATM 24 O O23 OLC . . . E 4 -1.879 27.426 26.315 1 63.61 ? O23 OLC 1204 A 1 HETATM 25 O O20 OLC . . . E 4 -1.011 26.122 28.718 1 65.91 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #