data_3NYA # _model_server_result.job_id O51eGeOOQr6eH6R_fDiF7Q _model_server_result.datetime_utc '2024-11-13 06:01:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 3NYA # _exptl.entry_id 3NYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3NYA _cell.length_a 40.577 _cell.length_b 75.73 _cell.length_c 173.403 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 114 A CYS 106 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 192 A CYS 184 1_555 A SG CYS 198 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 3NYA _atom_sites.fract_transf_matrix[1][1] 0.024645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1201 1201 CLR CLR . C 2 CLR A 1 1202 1202 CLR CLR . D 3 JTZ A 1 1203 1203 JTZ JTZ . E 4 HOH A 1 1204 1204 HOH HOH . E 4 HOH A 2 1205 1205 HOH HOH . E 4 HOH A 3 1206 1206 HOH HOH . E 4 HOH A 4 1207 1207 HOH HOH . E 4 HOH A 5 1208 1208 HOH HOH . E 4 HOH A 6 1209 1209 HOH HOH . E 4 HOH A 7 1210 1210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . B 2 11.712 10.153 -31.079 1 75.63 ? C1 CLR 1201 A 1 HETATM 2 C C2 CLR . . . B 2 11.628 10.018 -29.549 1 76.02 ? C2 CLR 1201 A 1 HETATM 3 C C3 CLR . . . B 2 10.22 10.181 -28.971 1 76.14 ? C3 CLR 1201 A 1 HETATM 4 C C4 CLR . . . B 2 9.255 9.263 -29.72 1 75.53 ? C4 CLR 1201 A 1 HETATM 5 C C5 CLR . . . B 2 9.284 9.639 -31.201 1 75.04 ? C5 CLR 1201 A 1 HETATM 6 C C6 CLR . . . B 2 8.14 8.972 -31.95 1 74.6 ? C6 CLR 1201 A 1 HETATM 7 C C7 CLR . . . B 2 8.062 9.539 -33.361 1 74.01 ? C7 CLR 1201 A 1 HETATM 8 C C8 CLR . . . B 2 9.374 9.333 -34.101 1 74.18 ? C8 CLR 1201 A 1 HETATM 9 C C9 CLR . . . B 2 10.567 9.91 -33.318 1 74.92 ? C9 CLR 1201 A 1 HETATM 10 C C10 CLR . . . B 2 10.646 9.376 -31.86 1 75.34 ? C10 CLR 1201 A 1 HETATM 11 C C11 CLR . . . B 2 11.866 9.748 -34.144 1 74.66 ? C11 CLR 1201 A 1 HETATM 12 C C12 CLR . . . B 2 11.774 10.304 -35.583 1 74.36 ? C12 CLR 1201 A 1 HETATM 13 C C13 CLR . . . B 2 10.548 9.784 -36.332 1 73.86 ? C13 CLR 1201 A 1 HETATM 14 C C14 CLR . . . B 2 9.318 10.015 -35.465 1 74.07 ? C14 CLR 1201 A 1 HETATM 15 C C15 CLR . . . B 2 8.152 9.686 -36.388 1 73.81 ? C15 CLR 1201 A 1 HETATM 16 C C16 CLR . . . B 2 8.634 10.138 -37.765 1 73.34 ? C16 CLR 1201 A 1 HETATM 17 C C17 CLR . . . B 2 10.112 10.533 -37.596 1 73 ? C17 CLR 1201 A 1 HETATM 18 C C18 CLR . . . B 2 10.739 8.303 -36.647 1 73.67 ? C18 CLR 1201 A 1 HETATM 19 C C19 CLR . . . B 2 10.997 7.889 -31.851 1 75.4 ? C19 CLR 1201 A 1 HETATM 20 C C20 CLR . . . B 2 11.023 10.362 -38.82 1 72.22 ? C20 CLR 1201 A 1 HETATM 21 C C21 CLR . . . B 2 11.904 11.605 -38.917 1 72.36 ? C21 CLR 1201 A 1 HETATM 22 C C22 CLR . . . B 2 10.328 10.052 -40.164 1 72.06 ? C22 CLR 1201 A 1 HETATM 23 C C23 CLR . . . B 2 9.881 11.251 -41.021 1 71.17 ? C23 CLR 1201 A 1 HETATM 24 C C24 CLR . . . B 2 10.57 11.274 -42.39 1 70.37 ? C24 CLR 1201 A 1 HETATM 25 C C25 CLR . . . B 2 9.596 11.337 -43.563 1 70 ? C25 CLR 1201 A 1 HETATM 26 C C26 CLR . . . B 2 10.257 10.898 -44.863 1 70.21 ? C26 CLR 1201 A 1 HETATM 27 C C27 CLR . . . B 2 9.046 12.741 -43.745 1 69.83 ? C27 CLR 1201 A 1 HETATM 28 O O1 CLR . . . B 2 10.225 9.901 -27.561 1 76.54 ? O1 CLR 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #