data_3NYB
#
_model_server_result.job_id            -lZEpoUpnD-xCq9fiwheqQ 
_model_server_result.datetime_utc      '2024-11-05 00:21:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2148}' 
#
_entry.id    3NYB 
#
_exptl.entry_id    3NYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NYB 
_cell.length_a            92.72 
_cell.length_b            92.72 
_cell.length_c            103.63 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 8 B CYS 123 1_555 C ZN ZN . B ZN 2147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc2 B NE2 HIS 16 B HIS 131 1_555 C ZN ZN . B ZN 2147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc3 B SG CYS 21 B CYS 136 1_555 C ZN ZN . B ZN 2147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc4 B SG CYS 49 B CYS 164 1_555 D ZN ZN . B ZN 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc5 B SG CYS 52 B CYS 167 1_555 D ZN ZN . B ZN 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc6 B NE2 HIS 57 B HIS 172 1_555 D ZN ZN . B ZN 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc7 B SG CYS 62 B CYS 177 1_555 D ZN ZN . B ZN 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NYB 
_atom_sites.fract_transf_matrix[1][1]    0.010785 
_atom_sites.fract_transf_matrix[1][2]    0.006227 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN B 1 2147 2147 ZN ZN . 
D 3 ZN B 1 2148 2148 ZN ZN . 
E 4 HOH A 1 1 1 HOH HOH . 
E 4 HOH A 2 2 2 HOH HOH . 
E 4 HOH A 3 4 4 HOH HOH . 
E 4 HOH A 4 5 5 HOH HOH . 
E 4 HOH A 5 6 6 HOH HOH . 
E 4 HOH A 6 7 7 HOH HOH . 
E 4 HOH A 7 8 8 HOH HOH . 
E 4 HOH A 8 9 9 HOH HOH . 
E 4 HOH A 9 10 10 HOH HOH . 
E 4 HOH A 10 11 11 HOH HOH . 
E 4 HOH A 11 12 12 HOH HOH . 
E 4 HOH A 12 13 13 HOH HOH . 
E 4 HOH A 13 14 14 HOH HOH . 
E 4 HOH A 14 15 15 HOH HOH . 
E 4 HOH A 15 16 16 HOH HOH . 
E 4 HOH A 16 18 18 HOH HOH . 
E 4 HOH A 17 19 19 HOH HOH . 
E 4 HOH A 18 20 20 HOH HOH . 
E 4 HOH A 19 21 21 HOH HOH . 
E 4 HOH A 20 22 22 HOH HOH . 
E 4 HOH A 21 23 23 HOH HOH . 
E 4 HOH A 22 24 24 HOH HOH . 
E 4 HOH A 23 26 26 HOH HOH . 
E 4 HOH A 24 27 27 HOH HOH . 
E 4 HOH A 25 28 28 HOH HOH . 
E 4 HOH A 26 29 29 HOH HOH . 
E 4 HOH A 27 30 30 HOH HOH . 
E 4 HOH A 28 31 31 HOH HOH . 
E 4 HOH A 29 32 32 HOH HOH . 
E 4 HOH A 30 33 33 HOH HOH . 
E 4 HOH A 31 34 34 HOH HOH . 
E 4 HOH A 32 35 35 HOH HOH . 
E 4 HOH A 33 36 36 HOH HOH . 
E 4 HOH A 34 37 37 HOH HOH . 
E 4 HOH A 35 38 38 HOH HOH . 
E 4 HOH A 36 39 39 HOH HOH . 
E 4 HOH A 37 40 40 HOH HOH . 
E 4 HOH A 38 41 41 HOH HOH . 
E 4 HOH A 39 42 42 HOH HOH . 
E 4 HOH A 40 43 43 HOH HOH . 
E 4 HOH A 41 44 44 HOH HOH . 
E 4 HOH A 42 45 45 HOH HOH . 
E 4 HOH A 43 46 46 HOH HOH . 
E 4 HOH A 44 49 49 HOH HOH . 
E 4 HOH A 45 50 50 HOH HOH . 
E 4 HOH A 46 51 51 HOH HOH . 
E 4 HOH A 47 53 53 HOH HOH . 
E 4 HOH A 48 54 54 HOH HOH . 
E 4 HOH A 49 55 55 HOH HOH . 
E 4 HOH A 50 56 56 HOH HOH . 
E 4 HOH A 51 58 58 HOH HOH . 
E 4 HOH A 52 59 59 HOH HOH . 
E 4 HOH A 53 60 60 HOH HOH . 
E 4 HOH A 54 61 61 HOH HOH . 
E 4 HOH A 55 62 62 HOH HOH . 
E 4 HOH A 56 64 64 HOH HOH . 
F 4 HOH B 1 17 17 HOH HOH . 
F 4 HOH B 2 25 25 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               70.837 
_atom_site.Cartn_y               -10.132 
_atom_site.Cartn_z               -38.163 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        82.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           2148 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#