data_3NYG
#
_model_server_result.job_id            NDEP4hNtourLNsV3agwyUg 
_model_server_result.datetime_utc      '2024-11-05 00:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3NYG 
#
_exptl.entry_id    3NYG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NYG 
_cell.length_a            51.303 
_cell.length_b            57.682 
_cell.length_c            61.745 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 35 A GLU 35 1_555 A N NLE 36 A NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C NLE 36 A NLE 36 1_555 A N ASN 37 A ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C GLY 40 A GLY 40 1_555 A N YCM 41 A YCM 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C YCM 41 A YCM 41 1_555 A N TRP 42 A TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C LYS 45 A LYS 45 1_555 A N NLE 46 A NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale6 A C NLE 46 A NLE 46 1_555 A N ILE 47 A ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 A C ILE 50 A ILE 50 1_555 A O2 GOA 51 A GOA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale8 A C GOA 51 A GOA 51 1_555 A N GLY 52 A GLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale11 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale12 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale13 B C GLU 35 B GLU 35 1_555 B N NLE 36 B NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 B C NLE 36 B NLE 36 1_555 B N ASN 37 B ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 B C GLY 40 B GLY 40 1_555 B N YCM 41 B YCM 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale16 B C YCM 41 B YCM 41 1_555 B N TRP 42 B TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale17 B C LYS 45 B LYS 45 1_555 B N NLE 46 B NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C NLE 46 B NLE 46 1_555 B N ILE 47 B ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 B C ILE 50 B ILE 50 1_555 B O2 GOA 51 B GOA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale20 B C GOA 51 B GOA 51 1_555 B N GLY 52 B GLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale21 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale22 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale23 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 410 n n 
S O2 SO4 doub 411 n n 
S O3 SO4 sing 412 n n 
S O4 SO4 sing 413 n n 
#
_atom_sites.entry_id                     3NYG 
_atom_sites.fract_transf_matrix[1][1]    0.019492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017336 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2NC A 1 100 1 2NC 2NC . 
D 3 SO4 A 1 501 501 SO4 SO4 . 
E 3 SO4 B 1 502 502 SO4 SO4 . 
F 3 SO4 B 1 503 503 SO4 SO4 . 
G 4 HOH A 1 101 101 HOH HOH . 
G 4 HOH A 2 103 103 HOH HOH . 
G 4 HOH A 3 105 105 HOH HOH . 
G 4 HOH A 4 106 106 HOH HOH . 
G 4 HOH A 5 108 108 HOH HOH . 
G 4 HOH A 6 109 109 HOH HOH . 
G 4 HOH A 7 113 113 HOH HOH . 
G 4 HOH A 8 116 116 HOH HOH . 
G 4 HOH A 9 117 117 HOH HOH . 
G 4 HOH A 10 119 119 HOH HOH . 
G 4 HOH A 11 120 120 HOH HOH . 
G 4 HOH A 12 122 122 HOH HOH . 
G 4 HOH A 13 123 123 HOH HOH . 
G 4 HOH A 14 124 124 HOH HOH . 
G 4 HOH A 15 125 125 HOH HOH . 
G 4 HOH A 16 126 126 HOH HOH . 
G 4 HOH A 17 128 128 HOH HOH . 
G 4 HOH A 18 129 129 HOH HOH . 
G 4 HOH A 19 132 132 HOH HOH . 
G 4 HOH A 20 135 135 HOH HOH . 
G 4 HOH A 21 142 142 HOH HOH . 
G 4 HOH A 22 143 143 HOH HOH . 
G 4 HOH A 23 146 146 HOH HOH . 
G 4 HOH A 24 147 147 HOH HOH . 
G 4 HOH A 25 148 148 HOH HOH . 
G 4 HOH A 26 151 151 HOH HOH . 
G 4 HOH A 27 153 153 HOH HOH . 
G 4 HOH A 28 301 301 HOH HOH . 
G 4 HOH A 29 302 4 HOH HOH . 
G 4 HOH A 30 303 5 HOH HOH . 
G 4 HOH A 31 304 7 HOH HOH . 
G 4 HOH A 32 305 10 HOH HOH . 
G 4 HOH A 33 306 12 HOH HOH . 
G 4 HOH A 34 307 14 HOH HOH . 
G 4 HOH A 35 308 15 HOH HOH . 
G 4 HOH A 36 309 16 HOH HOH . 
G 4 HOH A 37 310 17 HOH HOH . 
G 4 HOH A 38 311 18 HOH HOH . 
G 4 HOH A 39 312 21 HOH HOH . 
G 4 HOH A 40 313 23 HOH HOH . 
G 4 HOH A 41 314 24 HOH HOH . 
G 4 HOH A 42 315 26 HOH HOH . 
G 4 HOH A 43 316 27 HOH HOH . 
G 4 HOH A 44 317 28 HOH HOH . 
G 4 HOH A 45 318 32 HOH HOH . 
G 4 HOH A 46 319 33 HOH HOH . 
G 4 HOH A 47 320 34 HOH HOH . 
G 4 HOH A 48 321 36 HOH HOH . 
G 4 HOH A 49 322 39 HOH HOH . 
G 4 HOH A 50 323 42 HOH HOH . 
G 4 HOH A 51 324 44 HOH HOH . 
G 4 HOH A 52 325 45 HOH HOH . 
G 4 HOH A 53 326 46 HOH HOH . 
G 4 HOH A 54 327 48 HOH HOH . 
G 4 HOH A 55 328 50 HOH HOH . 
G 4 HOH A 56 329 53 HOH HOH . 
G 4 HOH A 57 330 54 HOH HOH . 
G 4 HOH A 58 331 55 HOH HOH . 
G 4 HOH A 59 332 57 HOH HOH . 
G 4 HOH A 60 333 58 HOH HOH . 
G 4 HOH A 61 334 59 HOH HOH . 
G 4 HOH A 62 335 62 HOH HOH . 
G 4 HOH A 63 336 64 HOH HOH . 
G 4 HOH A 64 337 66 HOH HOH . 
G 4 HOH A 65 338 67 HOH HOH . 
G 4 HOH A 66 339 68 HOH HOH . 
G 4 HOH A 67 340 69 HOH HOH . 
G 4 HOH A 68 341 73 HOH HOH . 
G 4 HOH A 69 342 76 HOH HOH . 
G 4 HOH A 70 343 77 HOH HOH . 
G 4 HOH A 71 344 79 HOH HOH . 
G 4 HOH A 72 345 80 HOH HOH . 
G 4 HOH A 73 346 83 HOH HOH . 
G 4 HOH A 74 347 85 HOH HOH . 
G 4 HOH A 75 349 97 HOH HOH . 
G 4 HOH A 76 350 99 HOH HOH . 
H 4 HOH B 1 100 100 HOH HOH . 
H 4 HOH B 2 101 1 HOH HOH . 
H 4 HOH B 3 102 102 HOH HOH . 
H 4 HOH B 4 103 2 HOH HOH . 
H 4 HOH B 5 104 104 HOH HOH . 
H 4 HOH B 6 105 3 HOH HOH . 
H 4 HOH B 7 106 6 HOH HOH . 
H 4 HOH B 8 107 107 HOH HOH . 
H 4 HOH B 9 108 8 HOH HOH . 
H 4 HOH B 10 109 9 HOH HOH . 
H 4 HOH B 11 110 110 HOH HOH . 
H 4 HOH B 12 111 111 HOH HOH . 
H 4 HOH B 13 112 112 HOH HOH . 
H 4 HOH B 14 113 11 HOH HOH . 
H 4 HOH B 15 114 114 HOH HOH . 
H 4 HOH B 16 115 115 HOH HOH . 
H 4 HOH B 17 116 13 HOH HOH . 
H 4 HOH B 18 117 19 HOH HOH . 
H 4 HOH B 19 118 118 HOH HOH . 
H 4 HOH B 20 119 20 HOH HOH . 
H 4 HOH B 21 120 22 HOH HOH . 
H 4 HOH B 22 121 121 HOH HOH . 
H 4 HOH B 23 122 25 HOH HOH . 
H 4 HOH B 24 123 29 HOH HOH . 
H 4 HOH B 25 124 30 HOH HOH . 
H 4 HOH B 26 125 31 HOH HOH . 
H 4 HOH B 27 126 35 HOH HOH . 
H 4 HOH B 28 127 127 HOH HOH . 
H 4 HOH B 29 128 37 HOH HOH . 
H 4 HOH B 30 129 38 HOH HOH . 
H 4 HOH B 31 130 130 HOH HOH . 
H 4 HOH B 32 131 131 HOH HOH . 
H 4 HOH B 33 132 40 HOH HOH . 
H 4 HOH B 34 133 133 HOH HOH . 
H 4 HOH B 35 134 134 HOH HOH . 
H 4 HOH B 36 135 41 HOH HOH . 
H 4 HOH B 37 136 136 HOH HOH . 
H 4 HOH B 38 137 137 HOH HOH . 
H 4 HOH B 39 138 138 HOH HOH . 
H 4 HOH B 40 139 139 HOH HOH . 
H 4 HOH B 41 140 140 HOH HOH . 
H 4 HOH B 42 141 141 HOH HOH . 
H 4 HOH B 43 142 43 HOH HOH . 
H 4 HOH B 44 143 47 HOH HOH . 
H 4 HOH B 45 144 144 HOH HOH . 
H 4 HOH B 46 145 145 HOH HOH . 
H 4 HOH B 47 146 49 HOH HOH . 
H 4 HOH B 48 147 51 HOH HOH . 
H 4 HOH B 49 148 52 HOH HOH . 
H 4 HOH B 50 149 149 HOH HOH . 
H 4 HOH B 51 150 150 HOH HOH . 
H 4 HOH B 52 151 56 HOH HOH . 
H 4 HOH B 53 152 152 HOH HOH . 
H 4 HOH B 54 153 60 HOH HOH . 
H 4 HOH B 55 154 61 HOH HOH . 
H 4 HOH B 56 155 63 HOH HOH . 
H 4 HOH B 57 156 65 HOH HOH . 
H 4 HOH B 58 157 70 HOH HOH . 
H 4 HOH B 59 158 71 HOH HOH . 
H 4 HOH B 60 159 72 HOH HOH . 
H 4 HOH B 61 160 74 HOH HOH . 
H 4 HOH B 62 161 75 HOH HOH . 
H 4 HOH B 63 162 78 HOH HOH . 
H 4 HOH B 64 163 81 HOH HOH . 
H 4 HOH B 65 164 82 HOH HOH . 
H 4 HOH B 66 165 84 HOH HOH . 
H 4 HOH B 67 166 86 HOH HOH . 
H 4 HOH B 68 167 87 HOH HOH . 
H 4 HOH B 69 168 88 HOH HOH . 
H 4 HOH B 70 169 89 HOH HOH . 
H 4 HOH B 71 170 90 HOH HOH . 
H 4 HOH B 72 171 91 HOH HOH . 
H 4 HOH B 73 172 92 HOH HOH . 
H 4 HOH B 74 173 93 HOH HOH . 
H 4 HOH B 75 174 94 HOH HOH . 
H 4 HOH B 76 175 95 HOH HOH . 
H 4 HOH B 77 176 98 HOH HOH . 
H 4 HOH B 78 348 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . D 3 10.621 -14.364 17.73 0.5 20.87 ? S SO4 501 A 1 
HETATM 2 O O1 SO4 . . . D 3 10.42 -13.043 17.124 0.5 16.78 ? O1 SO4 501 A 1 
HETATM 3 O O2 SO4 . . . D 3 12.045 -14.614 17.789 0.5 23.04 ? O2 SO4 501 A 1 
HETATM 4 O O3 SO4 . . . D 3 9.981 -15.26 16.746 0.5 24.15 ? O3 SO4 501 A 1 
HETATM 5 O O4 SO4 . . . D 3 9.957 -14.478 19.028 0.5 27.76 ? O4 SO4 501 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#