data_3NYK
#
_model_server_result.job_id            9rq030-iPNioU-cg-tm6lw 
_model_server_result.datetime_utc      '2024-10-11 10:16:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":124}' 
#
_entry.id    3NYK 
#
_exptl.entry_id    3NYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3NYK 
_cell.length_a            50.033 
_cell.length_b            50.033 
_cell.length_c            98.803 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 B CO CO . A CO 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 A ND1 HIS 81 A HIS 81 1_555 B CO CO . A CO 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3NYK 
_atom_sites.fract_transf_matrix[1][1]    0.019987 
_atom_sites.fract_transf_matrix[1][2]    0.011539 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 124 1 CO CO . 
C 3 HOH A 1 125 1 HOH HOH . 
C 3 HOH A 2 126 2 HOH HOH . 
C 3 HOH A 3 127 3 HOH HOH . 
C 3 HOH A 4 128 4 HOH HOH . 
C 3 HOH A 5 129 5 HOH HOH . 
C 3 HOH A 6 130 6 HOH HOH . 
C 3 HOH A 7 131 7 HOH HOH . 
C 3 HOH A 8 132 8 HOH HOH . 
C 3 HOH A 9 133 9 HOH HOH . 
C 3 HOH A 10 134 10 HOH HOH . 
C 3 HOH A 11 135 11 HOH HOH . 
C 3 HOH A 12 136 12 HOH HOH . 
C 3 HOH A 13 137 13 HOH HOH . 
C 3 HOH A 14 138 14 HOH HOH . 
C 3 HOH A 15 139 15 HOH HOH . 
C 3 HOH A 16 140 16 HOH HOH . 
C 3 HOH A 17 141 17 HOH HOH . 
C 3 HOH A 18 142 18 HOH HOH . 
C 3 HOH A 19 143 19 HOH HOH . 
C 3 HOH A 20 144 20 HOH HOH . 
C 3 HOH A 21 145 21 HOH HOH . 
C 3 HOH A 22 146 22 HOH HOH . 
C 3 HOH A 23 147 23 HOH HOH . 
C 3 HOH A 24 148 24 HOH HOH . 
C 3 HOH A 25 149 25 HOH HOH . 
C 3 HOH A 26 150 26 HOH HOH . 
C 3 HOH A 27 151 27 HOH HOH . 
C 3 HOH A 28 152 28 HOH HOH . 
C 3 HOH A 29 153 29 HOH HOH . 
C 3 HOH A 30 154 30 HOH HOH . 
C 3 HOH A 31 155 31 HOH HOH . 
C 3 HOH A 32 156 32 HOH HOH . 
C 3 HOH A 33 157 33 HOH HOH . 
C 3 HOH A 34 158 34 HOH HOH . 
C 3 HOH A 35 159 35 HOH HOH . 
C 3 HOH A 36 160 36 HOH HOH . 
C 3 HOH A 37 161 37 HOH HOH . 
C 3 HOH A 38 162 38 HOH HOH . 
C 3 HOH A 39 163 39 HOH HOH . 
C 3 HOH A 40 164 40 HOH HOH . 
C 3 HOH A 41 165 41 HOH HOH . 
C 3 HOH A 42 166 42 HOH HOH . 
C 3 HOH A 43 167 43 HOH HOH . 
C 3 HOH A 44 168 44 HOH HOH . 
C 3 HOH A 45 169 45 HOH HOH . 
C 3 HOH A 46 170 46 HOH HOH . 
C 3 HOH A 47 171 47 HOH HOH . 
C 3 HOH A 48 172 48 HOH HOH . 
C 3 HOH A 49 173 49 HOH HOH . 
C 3 HOH A 50 174 50 HOH HOH . 
C 3 HOH A 51 175 51 HOH HOH . 
C 3 HOH A 52 176 52 HOH HOH . 
C 3 HOH A 53 177 53 HOH HOH . 
C 3 HOH A 54 178 54 HOH HOH . 
C 3 HOH A 55 179 55 HOH HOH . 
C 3 HOH A 56 180 56 HOH HOH . 
C 3 HOH A 57 181 57 HOH HOH . 
C 3 HOH A 58 182 58 HOH HOH . 
C 3 HOH A 59 183 59 HOH HOH . 
C 3 HOH A 60 184 60 HOH HOH . 
C 3 HOH A 61 185 61 HOH HOH . 
C 3 HOH A 62 186 62 HOH HOH . 
C 3 HOH A 63 187 63 HOH HOH . 
C 3 HOH A 64 188 64 HOH HOH . 
C 3 HOH A 65 189 65 HOH HOH . 
C 3 HOH A 66 190 66 HOH HOH . 
C 3 HOH A 67 191 67 HOH HOH . 
C 3 HOH A 68 192 68 HOH HOH . 
C 3 HOH A 69 193 69 HOH HOH . 
C 3 HOH A 70 194 70 HOH HOH . 
C 3 HOH A 71 195 71 HOH HOH . 
C 3 HOH A 72 196 72 HOH HOH . 
C 3 HOH A 73 197 73 HOH HOH . 
C 3 HOH A 74 198 74 HOH HOH . 
C 3 HOH A 75 199 75 HOH HOH . 
C 3 HOH A 76 200 76 HOH HOH . 
C 3 HOH A 77 201 77 HOH HOH . 
C 3 HOH A 78 202 78 HOH HOH . 
C 3 HOH A 79 203 79 HOH HOH . 
C 3 HOH A 80 204 80 HOH HOH . 
C 3 HOH A 81 205 81 HOH HOH . 
C 3 HOH A 82 206 82 HOH HOH . 
C 3 HOH A 83 207 83 HOH HOH . 
C 3 HOH A 84 208 84 HOH HOH . 
C 3 HOH A 85 209 85 HOH HOH . 
C 3 HOH A 86 210 86 HOH HOH . 
C 3 HOH A 87 211 87 HOH HOH . 
C 3 HOH A 88 212 88 HOH HOH . 
C 3 HOH A 89 213 89 HOH HOH . 
C 3 HOH A 90 214 90 HOH HOH . 
C 3 HOH A 91 215 91 HOH HOH . 
C 3 HOH A 92 216 92 HOH HOH . 
C 3 HOH A 93 217 93 HOH HOH . 
C 3 HOH A 94 218 94 HOH HOH . 
C 3 HOH A 95 219 95 HOH HOH . 
C 3 HOH A 96 220 96 HOH HOH . 
C 3 HOH A 97 221 97 HOH HOH . 
C 3 HOH A 98 222 98 HOH HOH . 
C 3 HOH A 99 223 99 HOH HOH . 
C 3 HOH A 100 224 100 HOH HOH . 
C 3 HOH A 101 225 101 HOH HOH . 
C 3 HOH A 102 226 102 HOH HOH . 
C 3 HOH A 103 227 103 HOH HOH . 
C 3 HOH A 104 228 104 HOH HOH . 
C 3 HOH A 105 229 105 HOH HOH . 
C 3 HOH A 106 230 106 HOH HOH . 
C 3 HOH A 107 231 107 HOH HOH . 
C 3 HOH A 108 232 108 HOH HOH . 
C 3 HOH A 109 233 109 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               3.575 
_atom_site.Cartn_y               29.633 
_atom_site.Cartn_z               16.344 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.09 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           124 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#