data_3NYO # _model_server_result.job_id R7X1ibShR3hZ0IyAOe_fwg _model_server_result.datetime_utc '2024-11-24 19:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":582}' # _entry.id 3NYO # _exptl.entry_id 3NYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3NYO _cell.length_a 154.574 _cell.length_b 154.574 _cell.length_c 208.117 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,T 1 1 B,M,N,O,P,Q,R,S,U 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 S N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 350 n n S O2 SO4 doub 351 n n S O3 SO4 sing 352 n n S O4 SO4 sing 353 n n # _atom_sites.entry_id 3NYO _atom_sites.fract_transf_matrix[1][1] 0.006469 _atom_sites.fract_transf_matrix[1][2] 0.003735 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 577 577 AMP AMP . D 3 SO4 A 1 578 578 SO4 SO4 . E 3 SO4 A 1 579 579 SO4 SO4 . F 3 SO4 A 1 580 580 SO4 SO4 . G 3 SO4 A 1 581 581 SO4 SO4 . H 3 SO4 A 1 582 582 SO4 SO4 . I 4 BU3 A 1 583 583 BU3 BU3 . J 3 SO4 A 1 584 584 SO4 SO4 . K 3 SO4 A 1 585 585 SO4 SO4 . L 3 SO4 A 1 586 582 SO4 SO4 . M 2 AMP B 1 577 577 AMP AMP . N 3 SO4 B 1 578 578 SO4 SO4 . O 3 SO4 B 1 579 579 SO4 SO4 . P 3 SO4 B 1 580 580 SO4 SO4 . Q 3 SO4 B 1 581 581 SO4 SO4 . R 4 BU3 B 1 583 583 BU3 BU3 . S 3 SO4 B 1 584 584 SO4 SO4 . T 5 HOH A 1 587 1 HOH HOH . T 5 HOH A 2 588 2 HOH HOH . T 5 HOH A 3 589 3 HOH HOH . T 5 HOH A 4 590 4 HOH HOH . T 5 HOH A 5 591 6 HOH HOH . T 5 HOH A 6 592 7 HOH HOH . U 5 HOH B 1 582 3 HOH HOH . U 5 HOH B 2 585 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 3 -69.804 39.594 16.711 1 88.04 ? S SO4 582 A 1 HETATM 2 O O1 SO4 . . . H 3 -70.285 40.963 16.512 1 87.75 ? O1 SO4 582 A 1 HETATM 3 O O2 SO4 . . . H 3 -68.648 39.388 15.836 1 87.16 ? O2 SO4 582 A 1 HETATM 4 O O3 SO4 . . . H 3 -69.458 39.374 18.115 1 85.79 ? O3 SO4 582 A 1 HETATM 5 O O4 SO4 . . . H 3 -70.847 38.647 16.338 1 87.39 ? O4 SO4 582 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #