data_3NYX
#
_model_server_result.job_id            V_Jp4n5_bNM5SjkL7h7ZJg 
_model_server_result.datetime_utc      '2024-10-13 14:26:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1184}' 
#
_entry.id    3NYX 
#
_exptl.entry_id    3NYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3NYX 
_cell.length_a            55.318 
_cell.length_b            70.436 
_cell.length_c            86.488 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 83 n n 
S1 HS1 DTT sing 84 n n 
C1 C2 DTT sing 85 n n 
C1 H11 DTT sing 86 n n 
C1 H12 DTT sing 87 n n 
C2 O2 DTT sing 88 n n 
C2 C3 DTT sing 89 n n 
C2 H2 DTT sing 90 n n 
O2 HO2 DTT sing 91 n n 
C3 O3 DTT sing 92 n n 
C3 C4 DTT sing 93 n n 
C3 H3 DTT sing 94 n n 
O3 HO3 DTT sing 95 n n 
C4 S4 DTT sing 96 n n 
C4 H41 DTT sing 97 n n 
C4 H42 DTT sing 98 n n 
S4 HS2 DTT sing 99 n n 
#
_atom_sites.entry_id                     3NYX 
_atom_sites.fract_transf_matrix[1][1]    0.018077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011562 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TZ1 A 1 1 1 TZ1 TZ1 . 
C 3 DTT A 1 1184 1 DTT DTT . 
D 3 DTT A 1 2 2 DTT DTT . 
E 4 HOH A 1 3 3 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 5 5 HOH HOH . 
E 4 HOH A 4 6 6 HOH HOH . 
E 4 HOH A 5 7 7 HOH HOH . 
E 4 HOH A 6 8 8 HOH HOH . 
E 4 HOH A 7 9 9 HOH HOH . 
E 4 HOH A 8 10 10 HOH HOH . 
E 4 HOH A 9 11 11 HOH HOH . 
E 4 HOH A 10 12 12 HOH HOH . 
E 4 HOH A 11 14 14 HOH HOH . 
E 4 HOH A 12 15 15 HOH HOH . 
E 4 HOH A 13 16 16 HOH HOH . 
E 4 HOH A 14 17 17 HOH HOH . 
E 4 HOH A 15 18 18 HOH HOH . 
E 4 HOH A 16 19 19 HOH HOH . 
E 4 HOH A 17 20 20 HOH HOH . 
E 4 HOH A 18 21 21 HOH HOH . 
E 4 HOH A 19 22 22 HOH HOH . 
E 4 HOH A 20 23 23 HOH HOH . 
E 4 HOH A 21 24 24 HOH HOH . 
E 4 HOH A 22 25 25 HOH HOH . 
E 4 HOH A 23 26 26 HOH HOH . 
E 4 HOH A 24 27 27 HOH HOH . 
E 4 HOH A 25 28 28 HOH HOH . 
E 4 HOH A 26 29 29 HOH HOH . 
E 4 HOH A 27 31 31 HOH HOH . 
E 4 HOH A 28 32 32 HOH HOH . 
E 4 HOH A 29 33 33 HOH HOH . 
E 4 HOH A 30 34 34 HOH HOH . 
E 4 HOH A 31 35 35 HOH HOH . 
E 4 HOH A 32 36 36 HOH HOH . 
E 4 HOH A 33 37 37 HOH HOH . 
E 4 HOH A 34 38 38 HOH HOH . 
E 4 HOH A 35 39 39 HOH HOH . 
E 4 HOH A 36 40 40 HOH HOH . 
E 4 HOH A 37 41 41 HOH HOH . 
E 4 HOH A 38 42 42 HOH HOH . 
E 4 HOH A 39 43 43 HOH HOH . 
E 4 HOH A 40 44 44 HOH HOH . 
E 4 HOH A 41 45 45 HOH HOH . 
E 4 HOH A 42 46 46 HOH HOH . 
E 4 HOH A 43 47 47 HOH HOH . 
E 4 HOH A 44 48 48 HOH HOH . 
E 4 HOH A 45 49 49 HOH HOH . 
E 4 HOH A 46 50 50 HOH HOH . 
E 4 HOH A 47 51 51 HOH HOH . 
E 4 HOH A 48 52 52 HOH HOH . 
E 4 HOH A 49 53 53 HOH HOH . 
E 4 HOH A 50 54 54 HOH HOH . 
E 4 HOH A 51 55 55 HOH HOH . 
E 4 HOH A 52 56 56 HOH HOH . 
E 4 HOH A 53 57 57 HOH HOH . 
E 4 HOH A 54 58 58 HOH HOH . 
E 4 HOH A 55 59 59 HOH HOH . 
E 4 HOH A 56 1185 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . C 3 -21.814 17.222 -0.934 1 30.4 ? S1 DTT 1184 A 1 
HETATM 2 C C1 DTT . . . C 3 -21.166 15.624 -1.443 1 33.42 ? C1 DTT 1184 A 1 
HETATM 3 C C2 DTT . . . C 3 -19.709 15.833 -1.767 1 32.56 ? C2 DTT 1184 A 1 
HETATM 4 O O2 DTT . . . C 3 -19.553 17.151 -2.254 1 30.63 ? O2 DTT 1184 A 1 
HETATM 5 C C3 DTT . . . C 3 -19.191 14.824 -2.784 1 34.8 ? C3 DTT 1184 A 1 
HETATM 6 O O3 DTT . . . C 3 -19.032 13.538 -2.197 1 33.13 ? O3 DTT 1184 A 1 
HETATM 7 C C4 DTT . . . C 3 -17.867 15.359 -3.316 1 35.62 ? C4 DTT 1184 A 1 
HETATM 8 S S4 DTT . . . C 3 -16.773 14.034 -3.861 1 41.92 ? S4 DTT 1184 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#