data_3NZ6 # _model_server_result.job_id JwrOHmVFb3gfsbqGCihObA _model_server_result.datetime_utc '2024-10-18 12:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 3NZ6 # _exptl.entry_id 3NZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}hexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.39 _cell.angle_gamma 90 _cell.entry_id 3NZ6 _cell.length_a 37.113 _cell.length_b 42.768 _cell.length_c 60.756 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 N5 O4' _chem_comp.formula_weight 425.481 _chem_comp.id D2J _chem_comp.mon_nstd_flag . _chem_comp.name '6-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}hexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D2J doub 83 n y N1 C6 D2J sing 84 n y C2 N3 D2J sing 85 n y C2 NAC D2J sing 86 n n N3 C4 D2J doub 87 n y C4 C5 D2J sing 88 n y C4 NAQ D2J sing 89 n y C5 C6 D2J doub 90 n y C5 CAY D2J sing 91 n y C6 NAD D2J sing 92 n n CAA OAT D2J sing 93 n n CAA HAA D2J sing 94 n n CAA HAAA D2J sing 95 n n CAA HAAB D2J sing 96 n n CAB CAY D2J sing 97 n n CAB HAB D2J sing 98 n n CAB HABA D2J sing 99 n n CAB HABB D2J sing 100 n n NAC HNAC D2J sing 101 n n NAC HNAA D2J sing 102 n n NAD HNAD D2J sing 103 n n NAD HNAB D2J sing 104 n n OAE CAV D2J doub 105 n n OAF CAV D2J sing 106 n n CAG CAH D2J doub 107 n y CAG CAZ D2J sing 108 n y CAG HAG D2J sing 109 n n CAH CBC D2J sing 110 n y CAH HAH D2J sing 111 n n CAI NAQ D2J doub 112 n y CAI CBA D2J sing 113 n y CAI HAI D2J sing 114 n n CAJ CAZ D2J doub 115 n y CAJ CBB D2J sing 116 n y CAJ HAJ D2J sing 117 n n CAK CAL D2J sing 118 n n CAK CAM D2J sing 119 n n CAK HAK D2J sing 120 n n CAK HAKA D2J sing 121 n n CAL CAN D2J sing 122 n n CAL HAL D2J sing 123 n n CAL HALA D2J sing 124 n n CAM CAO D2J sing 125 n n CAM HAM D2J sing 126 n n CAM HAMA D2J sing 127 n n CAN OAU D2J sing 128 n n CAN HAN D2J sing 129 n n CAN HANA D2J sing 130 n n CAO CAV D2J sing 131 n n CAO HAO D2J sing 132 n n CAO HAOA D2J sing 133 n n CAP CBA D2J sing 134 n n CAP CBB D2J sing 135 n n CAP HAP D2J sing 136 n n CAP HAPA D2J sing 137 n n OAT CBC D2J sing 138 n n OAU CAZ D2J sing 139 n n CAY CBA D2J doub 140 n y CBB CBC D2J doub 141 n y OAF H27 D2J sing 142 n n # _atom_sites.entry_id 3NZ6 _atom_sites.fract_transf_matrix[1][1] 0.026945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002069 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2J X 1 207 207 D2J D2J . C 3 NDP X 1 208 208 NDP NDP . D 4 HOH X 1 209 1 HOH HOH . D 4 HOH X 2 210 2 HOH HOH . D 4 HOH X 3 211 3 HOH HOH . D 4 HOH X 4 212 4 HOH HOH . D 4 HOH X 5 213 5 HOH HOH . D 4 HOH X 6 214 6 HOH HOH . D 4 HOH X 7 215 7 HOH HOH . D 4 HOH X 8 216 8 HOH HOH . D 4 HOH X 9 217 9 HOH HOH . D 4 HOH X 10 218 10 HOH HOH . D 4 HOH X 11 219 11 HOH HOH . D 4 HOH X 12 220 12 HOH HOH . D 4 HOH X 13 221 13 HOH HOH . D 4 HOH X 14 222 14 HOH HOH . D 4 HOH X 15 223 15 HOH HOH . D 4 HOH X 16 224 16 HOH HOH . D 4 HOH X 17 225 17 HOH HOH . D 4 HOH X 18 226 18 HOH HOH . D 4 HOH X 19 227 19 HOH HOH . D 4 HOH X 20 228 20 HOH HOH . D 4 HOH X 21 229 21 HOH HOH . D 4 HOH X 22 230 22 HOH HOH . D 4 HOH X 23 231 23 HOH HOH . D 4 HOH X 24 232 24 HOH HOH . D 4 HOH X 25 233 25 HOH HOH . D 4 HOH X 26 234 26 HOH HOH . D 4 HOH X 27 235 27 HOH HOH . D 4 HOH X 28 236 28 HOH HOH . D 4 HOH X 29 237 29 HOH HOH . D 4 HOH X 30 238 30 HOH HOH . D 4 HOH X 31 239 31 HOH HOH . D 4 HOH X 32 240 32 HOH HOH . D 4 HOH X 33 241 33 HOH HOH . D 4 HOH X 34 242 34 HOH HOH . D 4 HOH X 35 243 35 HOH HOH . D 4 HOH X 36 244 36 HOH HOH . D 4 HOH X 37 245 37 HOH HOH . D 4 HOH X 38 246 38 HOH HOH . D 4 HOH X 39 247 39 HOH HOH . D 4 HOH X 40 248 40 HOH HOH . D 4 HOH X 41 249 41 HOH HOH . D 4 HOH X 42 250 42 HOH HOH . D 4 HOH X 43 251 43 HOH HOH . D 4 HOH X 44 252 44 HOH HOH . D 4 HOH X 45 253 45 HOH HOH . D 4 HOH X 46 254 46 HOH HOH . D 4 HOH X 47 255 47 HOH HOH . D 4 HOH X 48 256 48 HOH HOH . D 4 HOH X 49 257 49 HOH HOH . D 4 HOH X 50 258 50 HOH HOH . D 4 HOH X 51 259 51 HOH HOH . D 4 HOH X 52 260 52 HOH HOH . D 4 HOH X 53 261 53 HOH HOH . D 4 HOH X 54 262 54 HOH HOH . D 4 HOH X 55 263 55 HOH HOH . D 4 HOH X 56 264 56 HOH HOH . D 4 HOH X 57 265 57 HOH HOH . D 4 HOH X 58 266 58 HOH HOH . D 4 HOH X 59 267 59 HOH HOH . D 4 HOH X 60 268 60 HOH HOH . D 4 HOH X 61 269 61 HOH HOH . D 4 HOH X 62 270 62 HOH HOH . D 4 HOH X 63 271 63 HOH HOH . D 4 HOH X 64 272 64 HOH HOH . D 4 HOH X 65 273 65 HOH HOH . D 4 HOH X 66 274 66 HOH HOH . D 4 HOH X 67 275 67 HOH HOH . D 4 HOH X 68 276 68 HOH HOH . D 4 HOH X 69 277 69 HOH HOH . D 4 HOH X 70 278 70 HOH HOH . D 4 HOH X 71 279 71 HOH HOH . D 4 HOH X 72 280 72 HOH HOH . D 4 HOH X 73 281 73 HOH HOH . D 4 HOH X 74 282 74 HOH HOH . D 4 HOH X 75 283 75 HOH HOH . D 4 HOH X 76 284 76 HOH HOH . D 4 HOH X 77 285 77 HOH HOH . D 4 HOH X 78 286 78 HOH HOH . D 4 HOH X 79 287 79 HOH HOH . D 4 HOH X 80 288 80 HOH HOH . D 4 HOH X 81 289 81 HOH HOH . D 4 HOH X 82 290 82 HOH HOH . D 4 HOH X 83 291 83 HOH HOH . D 4 HOH X 84 292 84 HOH HOH . D 4 HOH X 85 293 85 HOH HOH . D 4 HOH X 86 294 86 HOH HOH . D 4 HOH X 87 295 87 HOH HOH . D 4 HOH X 88 296 88 HOH HOH . D 4 HOH X 89 297 89 HOH HOH . D 4 HOH X 90 298 90 HOH HOH . D 4 HOH X 91 299 91 HOH HOH . D 4 HOH X 92 300 92 HOH HOH . D 4 HOH X 93 301 93 HOH HOH . D 4 HOH X 94 302 94 HOH HOH . D 4 HOH X 95 303 96 HOH HOH . D 4 HOH X 96 304 97 HOH HOH . D 4 HOH X 97 305 98 HOH HOH . D 4 HOH X 98 306 99 HOH HOH . D 4 HOH X 99 307 100 HOH HOH . D 4 HOH X 100 308 101 HOH HOH . D 4 HOH X 101 309 102 HOH HOH . D 4 HOH X 102 310 103 HOH HOH . D 4 HOH X 103 311 104 HOH HOH . D 4 HOH X 104 312 105 HOH HOH . D 4 HOH X 105 313 106 HOH HOH . D 4 HOH X 106 314 107 HOH HOH . D 4 HOH X 107 315 108 HOH HOH . D 4 HOH X 108 316 109 HOH HOH . D 4 HOH X 109 317 110 HOH HOH . D 4 HOH X 110 318 111 HOH HOH . D 4 HOH X 111 319 112 HOH HOH . D 4 HOH X 112 320 113 HOH HOH . D 4 HOH X 113 321 114 HOH HOH . D 4 HOH X 114 322 115 HOH HOH . D 4 HOH X 115 323 116 HOH HOH . D 4 HOH X 116 324 117 HOH HOH . D 4 HOH X 117 325 118 HOH HOH . D 4 HOH X 118 326 119 HOH HOH . D 4 HOH X 119 327 120 HOH HOH . D 4 HOH X 120 328 121 HOH HOH . D 4 HOH X 121 329 122 HOH HOH . D 4 HOH X 122 330 123 HOH HOH . D 4 HOH X 123 331 124 HOH HOH . D 4 HOH X 124 332 125 HOH HOH . D 4 HOH X 125 333 126 HOH HOH . D 4 HOH X 126 334 127 HOH HOH . D 4 HOH X 127 335 128 HOH HOH . D 4 HOH X 128 336 129 HOH HOH . D 4 HOH X 129 337 130 HOH HOH . D 4 HOH X 130 338 131 HOH HOH . D 4 HOH X 131 339 132 HOH HOH . D 4 HOH X 132 340 133 HOH HOH . D 4 HOH X 133 341 134 HOH HOH . D 4 HOH X 134 342 135 HOH HOH . D 4 HOH X 135 343 136 HOH HOH . D 4 HOH X 136 344 137 HOH HOH . D 4 HOH X 137 345 138 HOH HOH . D 4 HOH X 138 346 139 HOH HOH . D 4 HOH X 139 347 140 HOH HOH . D 4 HOH X 140 348 141 HOH HOH . D 4 HOH X 141 349 142 HOH HOH . D 4 HOH X 142 350 143 HOH HOH . D 4 HOH X 143 351 144 HOH HOH . D 4 HOH X 144 352 145 HOH HOH . D 4 HOH X 145 353 146 HOH HOH . D 4 HOH X 146 354 147 HOH HOH . D 4 HOH X 147 355 148 HOH HOH . D 4 HOH X 148 356 149 HOH HOH . D 4 HOH X 149 357 150 HOH HOH . D 4 HOH X 150 358 151 HOH HOH . D 4 HOH X 151 359 152 HOH HOH . D 4 HOH X 152 360 153 HOH HOH . D 4 HOH X 153 361 154 HOH HOH . D 4 HOH X 154 362 155 HOH HOH . D 4 HOH X 155 363 156 HOH HOH . D 4 HOH X 156 364 157 HOH HOH . D 4 HOH X 157 365 158 HOH HOH . D 4 HOH X 158 366 159 HOH HOH . D 4 HOH X 159 367 160 HOH HOH . D 4 HOH X 160 368 161 HOH HOH . D 4 HOH X 161 369 162 HOH HOH . D 4 HOH X 162 370 163 HOH HOH . D 4 HOH X 163 371 164 HOH HOH . D 4 HOH X 164 372 165 HOH HOH . D 4 HOH X 165 373 166 HOH HOH . D 4 HOH X 166 374 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2J . . . B 2 10.33 -1.772 13.268 1 22.58 ? N1 D2J 207 X 1 HETATM 2 C C2 D2J . . . B 2 10.676 -2.607 12.259 1 21.57 ? C2 D2J 207 X 1 HETATM 3 N N3 D2J . . . B 2 11.693 -2.311 11.451 1 22.68 ? N3 D2J 207 X 1 HETATM 4 C C4 D2J . . . B 2 12.363 -1.178 11.595 1 25.78 ? C4 D2J 207 X 1 HETATM 5 C C5 D2J . . . B 2 11.991 -0.264 12.609 1 26.82 ? C5 D2J 207 X 1 HETATM 6 C C6 D2J . . . B 2 10.923 -0.616 13.479 1 23.09 ? C6 D2J 207 X 1 HETATM 7 C CAA D2J . . . B 2 17.617 1.488 14.494 1 36.34 ? CAA D2J 207 X 1 HETATM 8 C CAB D2J . . . B 2 12.457 2.024 13.741 1 25.87 ? CAB D2J 207 X 1 HETATM 9 N NAC D2J . . . B 2 10.027 -3.764 12.079 1 22.56 ? NAC D2J 207 X 1 HETATM 10 N NAD D2J . . . B 2 10.486 0.135 14.491 1 17.49 ? NAD D2J 207 X 1 HETATM 11 O OAE D2J . . . B 2 11.072 4.696 6.963 1 29.04 ? OAE D2J 207 X 1 HETATM 12 O OAF D2J . . . B 2 11.788 6.239 5.552 1 41.41 ? OAF D2J 207 X 1 HETATM 13 C CAG D2J . . . B 2 18.476 2.133 10.481 1 36.61 ? CAG D2J 207 X 1 HETATM 14 C CAH D2J . . . B 2 18.217 1.989 11.834 1 35.16 ? CAH D2J 207 X 1 HETATM 15 C CAI D2J . . . B 2 14.049 0.21 10.842 1 30.02 ? CAI D2J 207 X 1 HETATM 16 C CAJ D2J . . . B 2 16.139 2.552 10.03 1 36.12 ? CAJ D2J 207 X 1 HETATM 17 C CAK D2J . . . B 2 14.976 4.596 6.798 1 45.13 ? CAK D2J 207 X 1 HETATM 18 C CAL D2J . . . B 2 15.813 3.321 6.909 1 45.41 ? CAL D2J 207 X 1 HETATM 19 C CAM D2J . . . B 2 14.288 4.604 5.452 1 43.45 ? CAM D2J 207 X 1 HETATM 20 C CAN D2J . . . B 2 17.106 3.668 7.635 1 43.75 ? CAN D2J 207 X 1 HETATM 21 C CAO D2J . . . B 2 12.875 4.047 5.624 1 42.3 ? CAO D2J 207 X 1 HETATM 22 C CAP D2J . . . B 2 14.512 2.536 11.917 1 31.89 ? CAP D2J 207 X 1 HETATM 23 N NAQ D2J . . . B 2 13.383 -0.939 10.757 1 27.91 ? NAQ D2J 207 X 1 HETATM 24 O OAT D2J . . . B 2 16.544 1.994 13.623 1 39.23 ? OAT D2J 207 X 1 HETATM 25 O OAU D2J . . . B 2 17.791 2.538 8.264 1 42.24 ? OAU D2J 207 X 1 HETATM 26 C CAV D2J . . . B 2 11.837 5.106 6.109 1 38.82 ? CAV D2J 207 X 1 HETATM 27 C CAY D2J . . . B 2 12.714 0.941 12.705 1 27.27 ? CAY D2J 207 X 1 HETATM 28 C CAZ D2J . . . B 2 17.463 2.418 9.584 1 37.7 ? CAZ D2J 207 X 1 HETATM 29 C CBA D2J . . . B 2 13.746 1.19 11.817 1 30.23 ? CBA D2J 207 X 1 HETATM 30 C CBB D2J . . . B 2 15.9 2.408 11.394 1 34 ? CBB D2J 207 X 1 HETATM 31 C CBC D2J . . . B 2 16.91 2.13 12.283 1 35.73 ? CBC D2J 207 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #