data_3NZ6 # _model_server_result.job_id IV6_2qLiaYcBAvsnntikJQ _model_server_result.datetime_utc '2024-10-18 12:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":208}' # _entry.id 3NZ6 # _exptl.entry_id 3NZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.39 _cell.angle_gamma 90 _cell.entry_id 3NZ6 _cell.length_a 37.113 _cell.length_b 42.768 _cell.length_c 60.756 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 297 n n PA O2A NDP sing 298 n n PA O5B NDP sing 299 n n PA O3 NDP sing 300 n n O2A HOA2 NDP sing 301 n n O5B C5B NDP sing 302 n n C5B C4B NDP sing 303 n n C5B H51A NDP sing 304 n n C5B H52A NDP sing 305 n n C4B O4B NDP sing 306 n n C4B C3B NDP sing 307 n n C4B H4B NDP sing 308 n n O4B C1B NDP sing 309 n n C3B O3B NDP sing 310 n n C3B C2B NDP sing 311 n n C3B H3B NDP sing 312 n n O3B HO3A NDP sing 313 n n C2B O2B NDP sing 314 n n C2B C1B NDP sing 315 n n C2B H2B NDP sing 316 n n O2B P2B NDP sing 317 n n C1B N9A NDP sing 318 n n C1B H1B NDP sing 319 n n N9A C8A NDP sing 320 n y N9A C4A NDP sing 321 n y C8A N7A NDP doub 322 n y C8A H8A NDP sing 323 n n N7A C5A NDP sing 324 n y C5A C6A NDP sing 325 n y C5A C4A NDP doub 326 n y C6A N6A NDP sing 327 n n C6A N1A NDP doub 328 n y N6A H61A NDP sing 329 n n N6A H62A NDP sing 330 n n N1A C2A NDP sing 331 n y C2A N3A NDP doub 332 n y C2A H2A NDP sing 333 n n N3A C4A NDP sing 334 n y O3 PN NDP sing 335 n n PN O1N NDP doub 336 n n PN O2N NDP sing 337 n n PN O5D NDP sing 338 n n O2N H21N NDP sing 339 n n O5D C5D NDP sing 340 n n C5D C4D NDP sing 341 n n C5D H51N NDP sing 342 n n C5D H52N NDP sing 343 n n C4D O4D NDP sing 344 n n C4D C3D NDP sing 345 n n C4D H4D NDP sing 346 n n O4D C1D NDP sing 347 n n C3D O3D NDP sing 348 n n C3D C2D NDP sing 349 n n C3D H3D NDP sing 350 n n O3D HO3N NDP sing 351 n n C2D O2D NDP sing 352 n n C2D C1D NDP sing 353 n n C2D H2D NDP sing 354 n n O2D HO2N NDP sing 355 n n C1D N1N NDP sing 356 n n C1D H1D NDP sing 357 n n N1N C2N NDP sing 358 n n N1N C6N NDP sing 359 n n C2N C3N NDP doub 360 n n C2N H2N NDP sing 361 n n C3N C7N NDP sing 362 n n C3N C4N NDP sing 363 n n C7N O7N NDP doub 364 n n C7N N7N NDP sing 365 n n N7N H71N NDP sing 366 n n N7N H72N NDP sing 367 n n C4N C5N NDP sing 368 n n C4N H41N NDP sing 369 n n C4N H42N NDP sing 370 n n C5N C6N NDP doub 371 n n C5N H5N NDP sing 372 n n C6N H6N NDP sing 373 n n P2B O1X NDP doub 374 n n P2B O2X NDP sing 375 n n P2B O3X NDP sing 376 n n O2X HOP2 NDP sing 377 n n O3X HOP3 NDP sing 378 n n # _atom_sites.entry_id 3NZ6 _atom_sites.fract_transf_matrix[1][1] 0.026945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002069 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2J X 1 207 207 D2J D2J . C 3 NDP X 1 208 208 NDP NDP . D 4 HOH X 1 209 1 HOH HOH . D 4 HOH X 2 210 2 HOH HOH . D 4 HOH X 3 211 3 HOH HOH . D 4 HOH X 4 212 4 HOH HOH . D 4 HOH X 5 213 5 HOH HOH . D 4 HOH X 6 214 6 HOH HOH . D 4 HOH X 7 215 7 HOH HOH . D 4 HOH X 8 216 8 HOH HOH . D 4 HOH X 9 217 9 HOH HOH . D 4 HOH X 10 218 10 HOH HOH . D 4 HOH X 11 219 11 HOH HOH . D 4 HOH X 12 220 12 HOH HOH . D 4 HOH X 13 221 13 HOH HOH . D 4 HOH X 14 222 14 HOH HOH . D 4 HOH X 15 223 15 HOH HOH . D 4 HOH X 16 224 16 HOH HOH . D 4 HOH X 17 225 17 HOH HOH . D 4 HOH X 18 226 18 HOH HOH . D 4 HOH X 19 227 19 HOH HOH . D 4 HOH X 20 228 20 HOH HOH . D 4 HOH X 21 229 21 HOH HOH . D 4 HOH X 22 230 22 HOH HOH . D 4 HOH X 23 231 23 HOH HOH . D 4 HOH X 24 232 24 HOH HOH . D 4 HOH X 25 233 25 HOH HOH . D 4 HOH X 26 234 26 HOH HOH . D 4 HOH X 27 235 27 HOH HOH . D 4 HOH X 28 236 28 HOH HOH . D 4 HOH X 29 237 29 HOH HOH . D 4 HOH X 30 238 30 HOH HOH . D 4 HOH X 31 239 31 HOH HOH . D 4 HOH X 32 240 32 HOH HOH . D 4 HOH X 33 241 33 HOH HOH . D 4 HOH X 34 242 34 HOH HOH . D 4 HOH X 35 243 35 HOH HOH . D 4 HOH X 36 244 36 HOH HOH . D 4 HOH X 37 245 37 HOH HOH . D 4 HOH X 38 246 38 HOH HOH . D 4 HOH X 39 247 39 HOH HOH . D 4 HOH X 40 248 40 HOH HOH . D 4 HOH X 41 249 41 HOH HOH . D 4 HOH X 42 250 42 HOH HOH . D 4 HOH X 43 251 43 HOH HOH . D 4 HOH X 44 252 44 HOH HOH . D 4 HOH X 45 253 45 HOH HOH . D 4 HOH X 46 254 46 HOH HOH . D 4 HOH X 47 255 47 HOH HOH . D 4 HOH X 48 256 48 HOH HOH . D 4 HOH X 49 257 49 HOH HOH . D 4 HOH X 50 258 50 HOH HOH . D 4 HOH X 51 259 51 HOH HOH . D 4 HOH X 52 260 52 HOH HOH . D 4 HOH X 53 261 53 HOH HOH . D 4 HOH X 54 262 54 HOH HOH . D 4 HOH X 55 263 55 HOH HOH . D 4 HOH X 56 264 56 HOH HOH . D 4 HOH X 57 265 57 HOH HOH . D 4 HOH X 58 266 58 HOH HOH . D 4 HOH X 59 267 59 HOH HOH . D 4 HOH X 60 268 60 HOH HOH . D 4 HOH X 61 269 61 HOH HOH . D 4 HOH X 62 270 62 HOH HOH . D 4 HOH X 63 271 63 HOH HOH . D 4 HOH X 64 272 64 HOH HOH . D 4 HOH X 65 273 65 HOH HOH . D 4 HOH X 66 274 66 HOH HOH . D 4 HOH X 67 275 67 HOH HOH . D 4 HOH X 68 276 68 HOH HOH . D 4 HOH X 69 277 69 HOH HOH . D 4 HOH X 70 278 70 HOH HOH . D 4 HOH X 71 279 71 HOH HOH . D 4 HOH X 72 280 72 HOH HOH . D 4 HOH X 73 281 73 HOH HOH . D 4 HOH X 74 282 74 HOH HOH . D 4 HOH X 75 283 75 HOH HOH . D 4 HOH X 76 284 76 HOH HOH . D 4 HOH X 77 285 77 HOH HOH . D 4 HOH X 78 286 78 HOH HOH . D 4 HOH X 79 287 79 HOH HOH . D 4 HOH X 80 288 80 HOH HOH . D 4 HOH X 81 289 81 HOH HOH . D 4 HOH X 82 290 82 HOH HOH . D 4 HOH X 83 291 83 HOH HOH . D 4 HOH X 84 292 84 HOH HOH . D 4 HOH X 85 293 85 HOH HOH . D 4 HOH X 86 294 86 HOH HOH . D 4 HOH X 87 295 87 HOH HOH . D 4 HOH X 88 296 88 HOH HOH . D 4 HOH X 89 297 89 HOH HOH . D 4 HOH X 90 298 90 HOH HOH . D 4 HOH X 91 299 91 HOH HOH . D 4 HOH X 92 300 92 HOH HOH . D 4 HOH X 93 301 93 HOH HOH . D 4 HOH X 94 302 94 HOH HOH . D 4 HOH X 95 303 96 HOH HOH . D 4 HOH X 96 304 97 HOH HOH . D 4 HOH X 97 305 98 HOH HOH . D 4 HOH X 98 306 99 HOH HOH . D 4 HOH X 99 307 100 HOH HOH . D 4 HOH X 100 308 101 HOH HOH . D 4 HOH X 101 309 102 HOH HOH . D 4 HOH X 102 310 103 HOH HOH . D 4 HOH X 103 311 104 HOH HOH . D 4 HOH X 104 312 105 HOH HOH . D 4 HOH X 105 313 106 HOH HOH . D 4 HOH X 106 314 107 HOH HOH . D 4 HOH X 107 315 108 HOH HOH . D 4 HOH X 108 316 109 HOH HOH . D 4 HOH X 109 317 110 HOH HOH . D 4 HOH X 110 318 111 HOH HOH . D 4 HOH X 111 319 112 HOH HOH . D 4 HOH X 112 320 113 HOH HOH . D 4 HOH X 113 321 114 HOH HOH . D 4 HOH X 114 322 115 HOH HOH . D 4 HOH X 115 323 116 HOH HOH . D 4 HOH X 116 324 117 HOH HOH . D 4 HOH X 117 325 118 HOH HOH . D 4 HOH X 118 326 119 HOH HOH . D 4 HOH X 119 327 120 HOH HOH . D 4 HOH X 120 328 121 HOH HOH . D 4 HOH X 121 329 122 HOH HOH . D 4 HOH X 122 330 123 HOH HOH . D 4 HOH X 123 331 124 HOH HOH . D 4 HOH X 124 332 125 HOH HOH . D 4 HOH X 125 333 126 HOH HOH . D 4 HOH X 126 334 127 HOH HOH . D 4 HOH X 127 335 128 HOH HOH . D 4 HOH X 128 336 129 HOH HOH . D 4 HOH X 129 337 130 HOH HOH . D 4 HOH X 130 338 131 HOH HOH . D 4 HOH X 131 339 132 HOH HOH . D 4 HOH X 132 340 133 HOH HOH . D 4 HOH X 133 341 134 HOH HOH . D 4 HOH X 134 342 135 HOH HOH . D 4 HOH X 135 343 136 HOH HOH . D 4 HOH X 136 344 137 HOH HOH . D 4 HOH X 137 345 138 HOH HOH . D 4 HOH X 138 346 139 HOH HOH . D 4 HOH X 139 347 140 HOH HOH . D 4 HOH X 140 348 141 HOH HOH . D 4 HOH X 141 349 142 HOH HOH . D 4 HOH X 142 350 143 HOH HOH . D 4 HOH X 143 351 144 HOH HOH . D 4 HOH X 144 352 145 HOH HOH . D 4 HOH X 145 353 146 HOH HOH . D 4 HOH X 146 354 147 HOH HOH . D 4 HOH X 147 355 148 HOH HOH . D 4 HOH X 148 356 149 HOH HOH . D 4 HOH X 149 357 150 HOH HOH . D 4 HOH X 150 358 151 HOH HOH . D 4 HOH X 151 359 152 HOH HOH . D 4 HOH X 152 360 153 HOH HOH . D 4 HOH X 153 361 154 HOH HOH . D 4 HOH X 154 362 155 HOH HOH . D 4 HOH X 155 363 156 HOH HOH . D 4 HOH X 156 364 157 HOH HOH . D 4 HOH X 157 365 158 HOH HOH . D 4 HOH X 158 366 159 HOH HOH . D 4 HOH X 159 367 160 HOH HOH . D 4 HOH X 160 368 161 HOH HOH . D 4 HOH X 161 369 162 HOH HOH . D 4 HOH X 162 370 163 HOH HOH . D 4 HOH X 163 371 164 HOH HOH . D 4 HOH X 164 372 165 HOH HOH . D 4 HOH X 165 373 166 HOH HOH . D 4 HOH X 166 374 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 15.743 4.437 22.976 1 31.5 ? PA NDP 208 X 1 HETATM 2 O O1A NDP . . . C 3 15.69 4.547 21.483 1 30.57 ? O1A NDP 208 X 1 HETATM 3 O O2A NDP . . . C 3 14.493 4.112 23.77 1 28.62 ? O2A NDP 208 X 1 HETATM 4 O O5B NDP . . . C 3 16.278 5.853 23.479 1 34.48 ? O5B NDP 208 X 1 HETATM 5 C C5B NDP . . . C 3 16.6 5.905 24.907 1 33.46 ? C5B NDP 208 X 1 HETATM 6 C C4B NDP . . . C 3 16.453 7.316 25.29 1 35.24 ? C4B NDP 208 X 1 HETATM 7 O O4B NDP . . . C 3 15.163 7.82 24.735 1 33.54 ? O4B NDP 208 X 1 HETATM 8 C C3B NDP . . . C 3 16.429 7.697 26.791 1 36.55 ? C3B NDP 208 X 1 HETATM 9 O O3B NDP . . . C 3 17.767 7.632 27.3 1 36.13 ? O3B NDP 208 X 1 HETATM 10 C C2B NDP . . . C 3 16.064 9.069 26.284 1 38.19 ? C2B NDP 208 X 1 HETATM 11 O O2B NDP . . . C 3 16.076 10.142 27.153 1 42.12 ? O2B NDP 208 X 1 HETATM 12 C C1B NDP . . . C 3 14.671 8.744 25.699 1 35.56 ? C1B NDP 208 X 1 HETATM 13 N N9A NDP . . . C 3 13.528 7.987 26.397 1 33.74 ? N9A NDP 208 X 1 HETATM 14 C C8A NDP . . . C 3 13.126 6.732 26.076 1 32.03 ? C8A NDP 208 X 1 HETATM 15 N N7A NDP . . . C 3 12.072 6.39 26.82 1 28.97 ? N7A NDP 208 X 1 HETATM 16 C C5A NDP . . . C 3 11.757 7.412 27.6 1 31.8 ? C5A NDP 208 X 1 HETATM 17 C C6A NDP . . . C 3 10.761 7.624 28.567 1 32.13 ? C6A NDP 208 X 1 HETATM 18 N N6A NDP . . . C 3 9.835 6.681 28.906 1 32.44 ? N6A NDP 208 X 1 HETATM 19 N N1A NDP . . . C 3 10.733 8.818 29.175 1 33.51 ? N1A NDP 208 X 1 HETATM 20 C C2A NDP . . . C 3 11.615 9.776 28.9 1 33.73 ? C2A NDP 208 X 1 HETATM 21 N N3A NDP . . . C 3 12.563 9.611 27.985 1 34.77 ? N3A NDP 208 X 1 HETATM 22 C C4A NDP . . . C 3 12.682 8.429 27.332 1 32.71 ? C4A NDP 208 X 1 HETATM 23 O O3 NDP . . . C 3 17.036 3.629 23.466 1 32.56 ? O3 NDP 208 X 1 HETATM 24 P PN NDP . . . C 3 17.355 2.098 23.796 1 36.56 ? PN NDP 208 X 1 HETATM 25 O O1N NDP . . . C 3 16.549 1.711 24.992 1 35.56 ? O1N NDP 208 X 1 HETATM 26 O O2N NDP . . . C 3 18.835 2.152 23.932 1 37.57 ? O2N NDP 208 X 1 HETATM 27 O O5D NDP . . . C 3 17.043 1.303 22.475 1 33.84 ? O5D NDP 208 X 1 HETATM 28 C C5D NDP . . . C 3 17.805 1.699 21.309 1 33.25 ? C5D NDP 208 X 1 HETATM 29 C C4D NDP . . . C 3 18.22 0.415 20.56 1 31.32 ? C4D NDP 208 X 1 HETATM 30 O O4D NDP . . . C 3 16.955 -0.238 20.037 1 30.01 ? O4D NDP 208 X 1 HETATM 31 C C3D NDP . . . C 3 19.162 0.712 19.345 1 31.62 ? C3D NDP 208 X 1 HETATM 32 O O3D NDP . . . C 3 20.068 -0.388 19.132 1 30.11 ? O3D NDP 208 X 1 HETATM 33 C C2D NDP . . . C 3 18.21 0.709 18.168 1 30.33 ? C2D NDP 208 X 1 HETATM 34 O O2D NDP . . . C 3 18.93 0.35 16.952 1 33.86 ? O2D NDP 208 X 1 HETATM 35 C C1D NDP . . . C 3 17.177 -0.379 18.612 1 30.29 ? C1D NDP 208 X 1 HETATM 36 N N1N NDP . . . C 3 15.912 -0.29 17.823 1 27.45 ? N1N NDP 208 X 1 HETATM 37 C C2N NDP . . . C 3 15.434 -1.508 17.293 1 26.23 ? C2N NDP 208 X 1 HETATM 38 C C3N NDP . . . C 3 14.294 -1.533 16.511 1 24.07 ? C3N NDP 208 X 1 HETATM 39 C C7N NDP . . . C 3 13.789 -2.838 15.92 1 23.16 ? C7N NDP 208 X 1 HETATM 40 O O7N NDP . . . C 3 12.625 -2.898 15.524 1 22.88 ? O7N NDP 208 X 1 HETATM 41 N N7N NDP . . . C 3 14.704 -3.836 15.845 1 19.34 ? N7N NDP 208 X 1 HETATM 42 C C4N NDP . . . C 3 13.619 -0.341 16.302 1 24.21 ? C4N NDP 208 X 1 HETATM 43 C C5N NDP . . . C 3 14.095 0.841 16.849 1 21.79 ? C5N NDP 208 X 1 HETATM 44 C C6N NDP . . . C 3 15.238 0.897 17.64 1 24.32 ? C6N NDP 208 X 1 HETATM 45 P P2B NDP . . . C 3 17.396 11.099 27.28 1 41.49 ? P2B NDP 208 X 1 HETATM 46 O O1X NDP . . . C 3 17.38 12.3 26.272 1 38.86 ? O1X NDP 208 X 1 HETATM 47 O O2X NDP . . . C 3 18.635 10.181 26.808 1 46.76 ? O2X NDP 208 X 1 HETATM 48 O O3X NDP . . . C 3 17.432 11.451 28.729 1 48.61 ? O3X NDP 208 X 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #