data_3NZ9 # _model_server_result.job_id Y8uuySESLdzOtKdhBvV4PQ _model_server_result.datetime_utc '2024-11-28 12:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":207}' # _entry.id 3NZ9 # _exptl.entry_id 3NZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.481 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 4-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}butanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 3NZ9 _cell.length_a 36.952 _cell.length_b 42.673 _cell.length_c 60.099 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 N5 O4' _chem_comp.formula_weight 425.481 _chem_comp.id D2K _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 4-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}butanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 D2K doub 83 n y N1 C6 D2K sing 84 n y C2 N3 D2K sing 85 n y C2 NAD D2K sing 86 n n N3 C4 D2K doub 87 n y C4 C5 D2K sing 88 n y C4 NAP D2K sing 89 n y C5 C6 D2K doub 90 n y C5 CAZ D2K sing 91 n y C6 NAE D2K sing 92 n n CAA CAK D2K sing 93 n n CAB OAS D2K sing 94 n n CAC CAZ D2K sing 95 n n OAF CAV D2K doub 96 n n CAG CAH D2K doub 97 n y CAG CAX D2K sing 98 n y CAH CBC D2K sing 99 n y CAI NAP D2K doub 100 n y CAI CBA D2K sing 101 n y CAJ CAX D2K doub 102 n y CAJ CBB D2K sing 103 n y CAK OAT D2K sing 104 n n CAL CAM D2K sing 105 n n CAL CAN D2K sing 106 n n CAM OAU D2K sing 107 n n CAN CAV D2K sing 108 n n CAO CBA D2K sing 109 n n CAO CBB D2K sing 110 n n OAS CBC D2K sing 111 n n OAT CAV D2K sing 112 n n OAU CAX D2K sing 113 n n CAZ CBA D2K doub 114 n y CBB CBC D2K doub 115 n y CAA HAA D2K sing 116 n n CAA HAAA D2K sing 117 n n CAA HAAB D2K sing 118 n n CAB HAB D2K sing 119 n n CAB HABA D2K sing 120 n n CAB HABB D2K sing 121 n n CAC HAC D2K sing 122 n n CAC HACA D2K sing 123 n n CAC HACB D2K sing 124 n n NAD HNAD D2K sing 125 n n NAD HNAA D2K sing 126 n n NAE HNAE D2K sing 127 n n NAE HNAB D2K sing 128 n n CAG HAG D2K sing 129 n n CAH HAH D2K sing 130 n n CAI HAI D2K sing 131 n n CAJ HAJ D2K sing 132 n n CAK HAK D2K sing 133 n n CAK HAKA D2K sing 134 n n CAL HAL D2K sing 135 n n CAL HALA D2K sing 136 n n CAM HAM D2K sing 137 n n CAM HAMA D2K sing 138 n n CAN HAN D2K sing 139 n n CAN HANA D2K sing 140 n n CAO HAO D2K sing 141 n n CAO HAOA D2K sing 142 n n # _atom_sites.entry_id 3NZ9 _atom_sites.fract_transf_matrix[1][1] 0.027062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002273 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 208 208 NDP NDP . C 3 D2K X 1 207 1 D2K D2K . D 4 HOH X 1 209 2 HOH HOH . D 4 HOH X 2 210 3 HOH HOH . D 4 HOH X 3 211 4 HOH HOH . D 4 HOH X 4 212 5 HOH HOH . D 4 HOH X 5 213 6 HOH HOH . D 4 HOH X 6 214 7 HOH HOH . D 4 HOH X 7 215 9 HOH HOH . D 4 HOH X 8 216 10 HOH HOH . D 4 HOH X 9 217 11 HOH HOH . D 4 HOH X 10 218 12 HOH HOH . D 4 HOH X 11 219 13 HOH HOH . D 4 HOH X 12 220 14 HOH HOH . D 4 HOH X 13 221 15 HOH HOH . D 4 HOH X 14 222 16 HOH HOH . D 4 HOH X 15 223 17 HOH HOH . D 4 HOH X 16 224 18 HOH HOH . D 4 HOH X 17 225 19 HOH HOH . D 4 HOH X 18 226 20 HOH HOH . D 4 HOH X 19 227 21 HOH HOH . D 4 HOH X 20 228 22 HOH HOH . D 4 HOH X 21 229 23 HOH HOH . D 4 HOH X 22 230 25 HOH HOH . D 4 HOH X 23 231 26 HOH HOH . D 4 HOH X 24 232 27 HOH HOH . D 4 HOH X 25 233 28 HOH HOH . D 4 HOH X 26 234 29 HOH HOH . D 4 HOH X 27 235 31 HOH HOH . D 4 HOH X 28 236 32 HOH HOH . D 4 HOH X 29 237 33 HOH HOH . D 4 HOH X 30 238 34 HOH HOH . D 4 HOH X 31 239 36 HOH HOH . D 4 HOH X 32 240 37 HOH HOH . D 4 HOH X 33 241 38 HOH HOH . D 4 HOH X 34 242 39 HOH HOH . D 4 HOH X 35 243 40 HOH HOH . D 4 HOH X 36 244 41 HOH HOH . D 4 HOH X 37 245 42 HOH HOH . D 4 HOH X 38 246 43 HOH HOH . D 4 HOH X 39 247 44 HOH HOH . D 4 HOH X 40 248 46 HOH HOH . D 4 HOH X 41 249 47 HOH HOH . D 4 HOH X 42 250 48 HOH HOH . D 4 HOH X 43 251 49 HOH HOH . D 4 HOH X 44 252 51 HOH HOH . D 4 HOH X 45 253 52 HOH HOH . D 4 HOH X 46 254 53 HOH HOH . D 4 HOH X 47 255 54 HOH HOH . D 4 HOH X 48 256 55 HOH HOH . D 4 HOH X 49 257 56 HOH HOH . D 4 HOH X 50 258 57 HOH HOH . D 4 HOH X 51 259 58 HOH HOH . D 4 HOH X 52 260 60 HOH HOH . D 4 HOH X 53 261 61 HOH HOH . D 4 HOH X 54 262 62 HOH HOH . D 4 HOH X 55 263 63 HOH HOH . D 4 HOH X 56 264 64 HOH HOH . D 4 HOH X 57 265 65 HOH HOH . D 4 HOH X 58 266 67 HOH HOH . D 4 HOH X 59 267 68 HOH HOH . D 4 HOH X 60 268 69 HOH HOH . D 4 HOH X 61 269 75 HOH HOH . D 4 HOH X 62 270 76 HOH HOH . D 4 HOH X 63 271 77 HOH HOH . D 4 HOH X 64 272 79 HOH HOH . D 4 HOH X 65 273 83 HOH HOH . D 4 HOH X 66 274 84 HOH HOH . D 4 HOH X 67 275 85 HOH HOH . D 4 HOH X 68 276 86 HOH HOH . D 4 HOH X 69 277 87 HOH HOH . D 4 HOH X 70 278 1 HOH HOH . D 4 HOH X 71 279 3 HOH HOH . D 4 HOH X 72 280 10 HOH HOH . D 4 HOH X 73 281 11 HOH HOH . D 4 HOH X 74 282 13 HOH HOH . D 4 HOH X 75 283 20 HOH HOH . D 4 HOH X 76 284 26 HOH HOH . D 4 HOH X 77 285 29 HOH HOH . D 4 HOH X 78 286 30 HOH HOH . D 4 HOH X 79 287 31 HOH HOH . D 4 HOH X 80 288 32 HOH HOH . D 4 HOH X 81 289 34 HOH HOH . D 4 HOH X 82 290 36 HOH HOH . D 4 HOH X 83 291 40 HOH HOH . D 4 HOH X 84 292 41 HOH HOH . D 4 HOH X 85 293 51 HOH HOH . D 4 HOH X 86 294 52 HOH HOH . D 4 HOH X 87 295 55 HOH HOH . D 4 HOH X 88 296 58 HOH HOH . D 4 HOH X 89 297 59 HOH HOH . D 4 HOH X 90 298 61 HOH HOH . D 4 HOH X 91 299 62 HOH HOH . D 4 HOH X 92 300 68 HOH HOH . D 4 HOH X 93 301 77 HOH HOH . D 4 HOH X 94 302 81 HOH HOH . D 4 HOH X 95 303 83 HOH HOH . D 4 HOH X 96 304 98 HOH HOH . D 4 HOH X 97 305 99 HOH HOH . D 4 HOH X 98 306 100 HOH HOH . D 4 HOH X 99 307 103 HOH HOH . D 4 HOH X 100 308 128 HOH HOH . D 4 HOH X 101 309 129 HOH HOH . D 4 HOH X 102 310 170 HOH HOH . D 4 HOH X 103 311 178 HOH HOH . D 4 HOH X 104 312 183 HOH HOH . D 4 HOH X 105 313 185 HOH HOH . D 4 HOH X 106 314 9 HOH HOH . D 4 HOH X 107 315 11 HOH HOH . D 4 HOH X 108 316 14 HOH HOH . D 4 HOH X 109 317 15 HOH HOH . D 4 HOH X 110 318 36 HOH HOH . D 4 HOH X 111 319 99 HOH HOH . D 4 HOH X 112 320 145 HOH HOH . D 4 HOH X 113 321 14 HOH HOH . D 4 HOH X 114 322 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2K . . . C 3 10.277 -1.802 13.016 1 18.02 ? N1 D2K 207 X 1 HETATM 2 C C2 D2K . . . C 3 10.541 -2.643 12.012 1 21.04 ? C2 D2K 207 X 1 HETATM 3 N N3 D2K . . . C 3 11.61 -2.421 11.243 1 21.76 ? N3 D2K 207 X 1 HETATM 4 C C4 D2K . . . C 3 12.387 -1.336 11.452 1 22.94 ? C4 D2K 207 X 1 HETATM 5 C C5 D2K . . . C 3 12.087 -0.398 12.469 1 22.63 ? C5 D2K 207 X 1 HETATM 6 C C6 D2K . . . C 3 10.967 -0.691 13.309 1 20.7 ? C6 D2K 207 X 1 HETATM 7 C CAA D2K . . . C 3 15.012 4.754 2.125 1 54.65 ? CAA D2K 207 X 1 HETATM 8 C CAB D2K . . . C 3 16.329 2.269 14.335 1 48.27 ? CAB D2K 207 X 1 HETATM 9 C CAC D2K . . . C 3 12.784 1.848 13.605 1 26.95 ? CAC D2K 207 X 1 HETATM 10 N NAD D2K . . . C 3 9.758 -3.754 11.79 1 17.29 ? NAD D2K 207 X 1 HETATM 11 N NAE D2K . . . C 3 10.567 0.042 14.362 1 19.95 ? NAE D2K 207 X 1 HETATM 12 O OAF D2K . . . C 3 14.118 5.38 6.061 1 60.75 ? OAF D2K 207 X 1 HETATM 13 C CAG D2K . . . C 3 18.791 1.729 10.319 1 45.89 ? CAG D2K 207 X 1 HETATM 14 C CAH D2K . . . C 3 18.579 1.48 11.68 1 47.42 ? CAH D2K 207 X 1 HETATM 15 C CAI D2K . . . C 3 14.227 -0.108 10.727 1 26.01 ? CAI D2K 207 X 1 HETATM 16 C CAJ D2K . . . C 3 16.445 2.186 10.02 1 42.59 ? CAJ D2K 207 X 1 HETATM 17 C CAK D2K . . . C 3 15.123 3.709 3.256 1 55.22 ? CAK D2K 207 X 1 HETATM 18 C CAL D2K . . . C 3 16.65 3.677 6.576 1 56.03 ? CAL D2K 207 X 1 HETATM 19 C CAM D2K . . . C 3 17.169 3.544 7.989 1 53.58 ? CAM D2K 207 X 1 HETATM 20 C CAN D2K . . . C 3 15.179 3.313 6.517 1 57.88 ? CAN D2K 207 X 1 HETATM 21 C CAO D2K . . . C 3 14.851 2.101 11.853 1 36.75 ? CAO D2K 207 X 1 HETATM 22 N NAP D2K . . . C 3 13.44 -1.192 10.622 1 24.59 ? NAP D2K 207 X 1 HETATM 23 O OAS D2K . . . C 3 17.103 1.352 13.589 1 49.91 ? OAS D2K 207 X 1 HETATM 24 O OAT D2K . . . C 3 14.087 3.944 4.289 1 57.34 ? OAT D2K 207 X 1 HETATM 25 O OAU D2K . . . C 3 17.946 2.319 8.176 1 49.48 ? OAU D2K 207 X 1 HETATM 26 C CAV D2K . . . C 3 14.454 4.292 5.586 1 58.43 ? CAV D2K 207 X 1 HETATM 27 C CAX D2K . . . C 3 17.738 2.075 9.498 1 45.91 ? CAX D2K 207 X 1 HETATM 28 C CAZ D2K . . . C 3 12.907 0.732 12.571 1 25.88 ? CAZ D2K 207 X 1 HETATM 29 C CBA D2K . . . C 3 13.979 0.854 11.7 1 29.33 ? CBA D2K 207 X 1 HETATM 30 C CBB D2K . . . C 3 16.246 1.933 11.368 1 42.28 ? CBB D2K 207 X 1 HETATM 31 C CBC D2K . . . C 3 17.298 1.607 12.228 1 46.26 ? CBC D2K 207 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #