data_3NZ9
#
_model_server_result.job_id            KyIDA8MZBbbDpWqjNC_CGA 
_model_server_result.datetime_utc      '2024-11-24 18:55:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":208}' 
#
_entry.id    3NZ9 
#
_exptl.entry_id    3NZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.8 
_cell.angle_gamma         90 
_cell.entry_id            3NZ9 
_cell.length_a            36.952 
_cell.length_b            42.673 
_cell.length_c            60.099 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 297 n n 
PA O2A NDP sing 298 n n 
PA O5B NDP sing 299 n n 
PA O3 NDP sing 300 n n 
O2A HOA2 NDP sing 301 n n 
O5B C5B NDP sing 302 n n 
C5B C4B NDP sing 303 n n 
C5B H51A NDP sing 304 n n 
C5B H52A NDP sing 305 n n 
C4B O4B NDP sing 306 n n 
C4B C3B NDP sing 307 n n 
C4B H4B NDP sing 308 n n 
O4B C1B NDP sing 309 n n 
C3B O3B NDP sing 310 n n 
C3B C2B NDP sing 311 n n 
C3B H3B NDP sing 312 n n 
O3B HO3A NDP sing 313 n n 
C2B O2B NDP sing 314 n n 
C2B C1B NDP sing 315 n n 
C2B H2B NDP sing 316 n n 
O2B P2B NDP sing 317 n n 
C1B N9A NDP sing 318 n n 
C1B H1B NDP sing 319 n n 
N9A C8A NDP sing 320 n y 
N9A C4A NDP sing 321 n y 
C8A N7A NDP doub 322 n y 
C8A H8A NDP sing 323 n n 
N7A C5A NDP sing 324 n y 
C5A C6A NDP sing 325 n y 
C5A C4A NDP doub 326 n y 
C6A N6A NDP sing 327 n n 
C6A N1A NDP doub 328 n y 
N6A H61A NDP sing 329 n n 
N6A H62A NDP sing 330 n n 
N1A C2A NDP sing 331 n y 
C2A N3A NDP doub 332 n y 
C2A H2A NDP sing 333 n n 
N3A C4A NDP sing 334 n y 
O3 PN NDP sing 335 n n 
PN O1N NDP doub 336 n n 
PN O2N NDP sing 337 n n 
PN O5D NDP sing 338 n n 
O2N H21N NDP sing 339 n n 
O5D C5D NDP sing 340 n n 
C5D C4D NDP sing 341 n n 
C5D H51N NDP sing 342 n n 
C5D H52N NDP sing 343 n n 
C4D O4D NDP sing 344 n n 
C4D C3D NDP sing 345 n n 
C4D H4D NDP sing 346 n n 
O4D C1D NDP sing 347 n n 
C3D O3D NDP sing 348 n n 
C3D C2D NDP sing 349 n n 
C3D H3D NDP sing 350 n n 
O3D HO3N NDP sing 351 n n 
C2D O2D NDP sing 352 n n 
C2D C1D NDP sing 353 n n 
C2D H2D NDP sing 354 n n 
O2D HO2N NDP sing 355 n n 
C1D N1N NDP sing 356 n n 
C1D H1D NDP sing 357 n n 
N1N C2N NDP sing 358 n n 
N1N C6N NDP sing 359 n n 
C2N C3N NDP doub 360 n n 
C2N H2N NDP sing 361 n n 
C3N C7N NDP sing 362 n n 
C3N C4N NDP sing 363 n n 
C7N O7N NDP doub 364 n n 
C7N N7N NDP sing 365 n n 
N7N H71N NDP sing 366 n n 
N7N H72N NDP sing 367 n n 
C4N C5N NDP sing 368 n n 
C4N H41N NDP sing 369 n n 
C4N H42N NDP sing 370 n n 
C5N C6N NDP doub 371 n n 
C5N H5N NDP sing 372 n n 
C6N H6N NDP sing 373 n n 
P2B O1X NDP doub 374 n n 
P2B O2X NDP sing 375 n n 
P2B O3X NDP sing 376 n n 
O2X HOP2 NDP sing 377 n n 
O3X HOP3 NDP sing 378 n n 
#
_atom_sites.entry_id                     3NZ9 
_atom_sites.fract_transf_matrix[1][1]    0.027062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002273 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 208 208 NDP NDP . 
C 3 D2K X 1 207 1 D2K D2K . 
D 4 HOH X 1 209 2 HOH HOH . 
D 4 HOH X 2 210 3 HOH HOH . 
D 4 HOH X 3 211 4 HOH HOH . 
D 4 HOH X 4 212 5 HOH HOH . 
D 4 HOH X 5 213 6 HOH HOH . 
D 4 HOH X 6 214 7 HOH HOH . 
D 4 HOH X 7 215 9 HOH HOH . 
D 4 HOH X 8 216 10 HOH HOH . 
D 4 HOH X 9 217 11 HOH HOH . 
D 4 HOH X 10 218 12 HOH HOH . 
D 4 HOH X 11 219 13 HOH HOH . 
D 4 HOH X 12 220 14 HOH HOH . 
D 4 HOH X 13 221 15 HOH HOH . 
D 4 HOH X 14 222 16 HOH HOH . 
D 4 HOH X 15 223 17 HOH HOH . 
D 4 HOH X 16 224 18 HOH HOH . 
D 4 HOH X 17 225 19 HOH HOH . 
D 4 HOH X 18 226 20 HOH HOH . 
D 4 HOH X 19 227 21 HOH HOH . 
D 4 HOH X 20 228 22 HOH HOH . 
D 4 HOH X 21 229 23 HOH HOH . 
D 4 HOH X 22 230 25 HOH HOH . 
D 4 HOH X 23 231 26 HOH HOH . 
D 4 HOH X 24 232 27 HOH HOH . 
D 4 HOH X 25 233 28 HOH HOH . 
D 4 HOH X 26 234 29 HOH HOH . 
D 4 HOH X 27 235 31 HOH HOH . 
D 4 HOH X 28 236 32 HOH HOH . 
D 4 HOH X 29 237 33 HOH HOH . 
D 4 HOH X 30 238 34 HOH HOH . 
D 4 HOH X 31 239 36 HOH HOH . 
D 4 HOH X 32 240 37 HOH HOH . 
D 4 HOH X 33 241 38 HOH HOH . 
D 4 HOH X 34 242 39 HOH HOH . 
D 4 HOH X 35 243 40 HOH HOH . 
D 4 HOH X 36 244 41 HOH HOH . 
D 4 HOH X 37 245 42 HOH HOH . 
D 4 HOH X 38 246 43 HOH HOH . 
D 4 HOH X 39 247 44 HOH HOH . 
D 4 HOH X 40 248 46 HOH HOH . 
D 4 HOH X 41 249 47 HOH HOH . 
D 4 HOH X 42 250 48 HOH HOH . 
D 4 HOH X 43 251 49 HOH HOH . 
D 4 HOH X 44 252 51 HOH HOH . 
D 4 HOH X 45 253 52 HOH HOH . 
D 4 HOH X 46 254 53 HOH HOH . 
D 4 HOH X 47 255 54 HOH HOH . 
D 4 HOH X 48 256 55 HOH HOH . 
D 4 HOH X 49 257 56 HOH HOH . 
D 4 HOH X 50 258 57 HOH HOH . 
D 4 HOH X 51 259 58 HOH HOH . 
D 4 HOH X 52 260 60 HOH HOH . 
D 4 HOH X 53 261 61 HOH HOH . 
D 4 HOH X 54 262 62 HOH HOH . 
D 4 HOH X 55 263 63 HOH HOH . 
D 4 HOH X 56 264 64 HOH HOH . 
D 4 HOH X 57 265 65 HOH HOH . 
D 4 HOH X 58 266 67 HOH HOH . 
D 4 HOH X 59 267 68 HOH HOH . 
D 4 HOH X 60 268 69 HOH HOH . 
D 4 HOH X 61 269 75 HOH HOH . 
D 4 HOH X 62 270 76 HOH HOH . 
D 4 HOH X 63 271 77 HOH HOH . 
D 4 HOH X 64 272 79 HOH HOH . 
D 4 HOH X 65 273 83 HOH HOH . 
D 4 HOH X 66 274 84 HOH HOH . 
D 4 HOH X 67 275 85 HOH HOH . 
D 4 HOH X 68 276 86 HOH HOH . 
D 4 HOH X 69 277 87 HOH HOH . 
D 4 HOH X 70 278 1 HOH HOH . 
D 4 HOH X 71 279 3 HOH HOH . 
D 4 HOH X 72 280 10 HOH HOH . 
D 4 HOH X 73 281 11 HOH HOH . 
D 4 HOH X 74 282 13 HOH HOH . 
D 4 HOH X 75 283 20 HOH HOH . 
D 4 HOH X 76 284 26 HOH HOH . 
D 4 HOH X 77 285 29 HOH HOH . 
D 4 HOH X 78 286 30 HOH HOH . 
D 4 HOH X 79 287 31 HOH HOH . 
D 4 HOH X 80 288 32 HOH HOH . 
D 4 HOH X 81 289 34 HOH HOH . 
D 4 HOH X 82 290 36 HOH HOH . 
D 4 HOH X 83 291 40 HOH HOH . 
D 4 HOH X 84 292 41 HOH HOH . 
D 4 HOH X 85 293 51 HOH HOH . 
D 4 HOH X 86 294 52 HOH HOH . 
D 4 HOH X 87 295 55 HOH HOH . 
D 4 HOH X 88 296 58 HOH HOH . 
D 4 HOH X 89 297 59 HOH HOH . 
D 4 HOH X 90 298 61 HOH HOH . 
D 4 HOH X 91 299 62 HOH HOH . 
D 4 HOH X 92 300 68 HOH HOH . 
D 4 HOH X 93 301 77 HOH HOH . 
D 4 HOH X 94 302 81 HOH HOH . 
D 4 HOH X 95 303 83 HOH HOH . 
D 4 HOH X 96 304 98 HOH HOH . 
D 4 HOH X 97 305 99 HOH HOH . 
D 4 HOH X 98 306 100 HOH HOH . 
D 4 HOH X 99 307 103 HOH HOH . 
D 4 HOH X 100 308 128 HOH HOH . 
D 4 HOH X 101 309 129 HOH HOH . 
D 4 HOH X 102 310 170 HOH HOH . 
D 4 HOH X 103 311 178 HOH HOH . 
D 4 HOH X 104 312 183 HOH HOH . 
D 4 HOH X 105 313 185 HOH HOH . 
D 4 HOH X 106 314 9 HOH HOH . 
D 4 HOH X 107 315 11 HOH HOH . 
D 4 HOH X 108 316 14 HOH HOH . 
D 4 HOH X 109 317 15 HOH HOH . 
D 4 HOH X 110 318 36 HOH HOH . 
D 4 HOH X 111 319 99 HOH HOH . 
D 4 HOH X 112 320 145 HOH HOH . 
D 4 HOH X 113 321 14 HOH HOH . 
D 4 HOH X 114 322 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 15.718 4.134 22.963 1 32.45 ? PA NDP 208 X 1 
HETATM 2 O O1A NDP . . . B 2 15.681 4.584 21.553 1 24.5 ? O1A NDP 208 X 1 
HETATM 3 O O2A NDP . . . B 2 14.442 3.764 23.699 1 28.88 ? O2A NDP 208 X 1 
HETATM 4 O O5B NDP . . . B 2 16.212 5.538 23.71 1 29.64 ? O5B NDP 208 X 1 
HETATM 5 C C5B NDP . . . B 2 16.456 5.389 25.078 1 33.92 ? C5B NDP 208 X 1 
HETATM 6 C C4B NDP . . . B 2 16.518 6.784 25.48 1 34.65 ? C4B NDP 208 X 1 
HETATM 7 O O4B NDP . . . B 2 15.345 7.513 24.795 1 34.34 ? O4B NDP 208 X 1 
HETATM 8 C C3B NDP . . . B 2 16.503 7.213 26.943 1 39.42 ? C3B NDP 208 X 1 
HETATM 9 O O3B NDP . . . B 2 17.814 7.087 27.498 1 42.83 ? O3B NDP 208 X 1 
HETATM 10 C C2B NDP . . . B 2 16.293 8.575 26.322 1 38.84 ? C2B NDP 208 X 1 
HETATM 11 O O2B NDP . . . B 2 16.263 9.641 27.059 1 40.87 ? O2B NDP 208 X 1 
HETATM 12 C C1B NDP . . . B 2 14.84 8.358 25.788 1 37.98 ? C1B NDP 208 X 1 
HETATM 13 N N9A NDP . . . B 2 13.556 7.633 26.462 1 42.08 ? N9A NDP 208 X 1 
HETATM 14 C C8A NDP . . . B 2 13.094 6.383 26.174 1 39.18 ? C8A NDP 208 X 1 
HETATM 15 N N7A NDP . . . B 2 11.98 6.073 26.865 1 36 ? N7A NDP 208 X 1 
HETATM 16 C C5A NDP . . . B 2 11.671 7.174 27.58 1 39.74 ? C5A NDP 208 X 1 
HETATM 17 C C6A NDP . . . B 2 10.637 7.503 28.48 1 41.3 ? C6A NDP 208 X 1 
HETATM 18 N N6A NDP . . . B 2 9.651 6.635 28.819 1 39.73 ? N6A NDP 208 X 1 
HETATM 19 N N1A NDP . . . B 2 10.641 8.743 29.038 1 39.3 ? N1A NDP 208 X 1 
HETATM 20 C C2A NDP . . . B 2 11.594 9.635 28.757 1 39.03 ? C2A NDP 208 X 1 
HETATM 21 N N3A NDP . . . B 2 12.589 9.367 27.917 1 41.33 ? N3A NDP 208 X 1 
HETATM 22 C C4A NDP . . . B 2 12.665 8.152 27.325 1 39.46 ? C4A NDP 208 X 1 
HETATM 23 O O3 NDP . . . B 2 17.027 3.24 23.278 1 35.28 ? O3 NDP 208 X 1 
HETATM 24 P PN NDP . . . B 2 17.247 1.682 23.678 1 37.96 ? PN NDP 208 X 1 
HETATM 25 O O1N NDP . . . B 2 16.359 1.165 24.744 1 42.82 ? O1N NDP 208 X 1 
HETATM 26 O O2N NDP . . . B 2 18.754 1.715 23.96 1 41.92 ? O2N NDP 208 X 1 
HETATM 27 O O5D NDP . . . B 2 17.025 0.903 22.29 1 34.63 ? O5D NDP 208 X 1 
HETATM 28 C C5D NDP . . . B 2 17.813 1.285 21.155 1 35 ? C5D NDP 208 X 1 
HETATM 29 C C4D NDP . . . B 2 18.371 0.049 20.433 1 34.67 ? C4D NDP 208 X 1 
HETATM 30 O O4D NDP . . . B 2 17.125 -0.397 19.806 1 37.23 ? O4D NDP 208 X 1 
HETATM 31 C C3D NDP . . . B 2 19.341 0.337 19.276 1 33.37 ? C3D NDP 208 X 1 
HETATM 32 O O3D NDP . . . B 2 20.148 -0.851 19.02 1 31.3 ? O3D NDP 208 X 1 
HETATM 33 C C2D NDP . . . B 2 18.402 0.489 18.098 1 35.72 ? C2D NDP 208 X 1 
HETATM 34 O O2D NDP . . . B 2 19.093 0.131 16.892 1 37.95 ? O2D NDP 208 X 1 
HETATM 35 C C1D NDP . . . B 2 17.396 -0.625 18.445 1 35.82 ? C1D NDP 208 X 1 
HETATM 36 N N1N NDP . . . B 2 16.098 -0.562 17.726 1 33.05 ? N1N NDP 208 X 1 
HETATM 37 C C2N NDP . . . B 2 15.592 -1.756 17.185 1 29.73 ? C2N NDP 208 X 1 
HETATM 38 C C3N NDP . . . B 2 14.376 -1.687 16.516 1 26.68 ? C3N NDP 208 X 1 
HETATM 39 C C7N NDP . . . B 2 13.79 -2.953 15.851 1 23.47 ? C7N NDP 208 X 1 
HETATM 40 O O7N NDP . . . B 2 12.668 -2.848 15.34 1 20.03 ? O7N NDP 208 X 1 
HETATM 41 N N7N NDP . . . B 2 14.669 -4.005 15.751 1 22.34 ? N7N NDP 208 X 1 
HETATM 42 C C4N NDP . . . B 2 13.649 -0.472 16.428 1 28.11 ? C4N NDP 208 X 1 
HETATM 43 C C5N NDP . . . B 2 14.145 0.72 16.965 1 29.92 ? C5N NDP 208 X 1 
HETATM 44 C C6N NDP . . . B 2 15.363 0.67 17.636 1 33.61 ? C6N NDP 208 X 1 
HETATM 45 P P2B NDP . . . B 2 17.487 10.448 27.753 1 42.33 ? P2B NDP 208 X 1 
HETATM 46 O O1X NDP . . . B 2 17.748 11.482 26.551 1 34.61 ? O1X NDP 208 X 1 
HETATM 47 O O2X NDP . . . B 2 18.753 9.43 27.898 1 41.14 ? O2X NDP 208 X 1 
HETATM 48 O O3X NDP . . . B 2 16.752 10.827 29.022 1 37.53 ? O3X NDP 208 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#