data_3NZA
#
_model_server_result.job_id            VFtQZ86B1YiDR276RZl44Q 
_model_server_result.datetime_utc      '2024-11-08 16:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":207}' 
#
_entry.id    3NZA 
#
_exptl.entry_id    3NZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.481 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ethyl 4-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}butanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.57 
_cell.angle_gamma         90 
_cell.entry_id            3NZA 
_cell.length_a            36.959 
_cell.length_b            42.679 
_cell.length_c            60.609 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H27 N5 O4' 
_chem_comp.formula_weight    425.481 
_chem_comp.id                D2K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ethyl 4-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}butanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D2K doub 83 n y 
N1 C6 D2K sing 84 n y 
C2 N3 D2K sing 85 n y 
C2 NAD D2K sing 86 n n 
N3 C4 D2K doub 87 n y 
C4 C5 D2K sing 88 n y 
C4 NAP D2K sing 89 n y 
C5 C6 D2K doub 90 n y 
C5 CAZ D2K sing 91 n y 
C6 NAE D2K sing 92 n n 
CAA CAK D2K sing 93 n n 
CAB OAS D2K sing 94 n n 
CAC CAZ D2K sing 95 n n 
OAF CAV D2K doub 96 n n 
CAG CAH D2K doub 97 n y 
CAG CAX D2K sing 98 n y 
CAH CBC D2K sing 99 n y 
CAI NAP D2K doub 100 n y 
CAI CBA D2K sing 101 n y 
CAJ CAX D2K doub 102 n y 
CAJ CBB D2K sing 103 n y 
CAK OAT D2K sing 104 n n 
CAL CAM D2K sing 105 n n 
CAL CAN D2K sing 106 n n 
CAM OAU D2K sing 107 n n 
CAN CAV D2K sing 108 n n 
CAO CBA D2K sing 109 n n 
CAO CBB D2K sing 110 n n 
OAS CBC D2K sing 111 n n 
OAT CAV D2K sing 112 n n 
OAU CAX D2K sing 113 n n 
CAZ CBA D2K doub 114 n y 
CBB CBC D2K doub 115 n y 
CAA HAA D2K sing 116 n n 
CAA HAAA D2K sing 117 n n 
CAA HAAB D2K sing 118 n n 
CAB HAB D2K sing 119 n n 
CAB HABA D2K sing 120 n n 
CAB HABB D2K sing 121 n n 
CAC HAC D2K sing 122 n n 
CAC HACA D2K sing 123 n n 
CAC HACB D2K sing 124 n n 
NAD HNAD D2K sing 125 n n 
NAD HNAA D2K sing 126 n n 
NAE HNAE D2K sing 127 n n 
NAE HNAB D2K sing 128 n n 
CAG HAG D2K sing 129 n n 
CAH HAH D2K sing 130 n n 
CAI HAI D2K sing 131 n n 
CAJ HAJ D2K sing 132 n n 
CAK HAK D2K sing 133 n n 
CAK HAKA D2K sing 134 n n 
CAL HAL D2K sing 135 n n 
CAL HALA D2K sing 136 n n 
CAM HAM D2K sing 137 n n 
CAM HAMA D2K sing 138 n n 
CAN HAN D2K sing 139 n n 
CAN HANA D2K sing 140 n n 
CAO HAO D2K sing 141 n n 
CAO HAOA D2K sing 142 n n 
#
_atom_sites.entry_id                     3NZA 
_atom_sites.fract_transf_matrix[1][1]    0.027057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002164 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016552 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 208 208 NDP NDP . 
C 3 D2K X 1 207 1 D2K D2K . 
D 4 CL X 1 209 1 CL CL . 
E 5 HOH X 1 210 1 HOH HOH . 
E 5 HOH X 2 211 2 HOH HOH . 
E 5 HOH X 3 212 3 HOH HOH . 
E 5 HOH X 4 213 4 HOH HOH . 
E 5 HOH X 5 214 5 HOH HOH . 
E 5 HOH X 6 215 6 HOH HOH . 
E 5 HOH X 7 216 7 HOH HOH . 
E 5 HOH X 8 217 11 HOH HOH . 
E 5 HOH X 9 218 12 HOH HOH . 
E 5 HOH X 10 219 13 HOH HOH . 
E 5 HOH X 11 220 14 HOH HOH . 
E 5 HOH X 12 221 15 HOH HOH . 
E 5 HOH X 13 222 16 HOH HOH . 
E 5 HOH X 14 223 17 HOH HOH . 
E 5 HOH X 15 224 18 HOH HOH . 
E 5 HOH X 16 225 19 HOH HOH . 
E 5 HOH X 17 226 20 HOH HOH . 
E 5 HOH X 18 227 21 HOH HOH . 
E 5 HOH X 19 228 22 HOH HOH . 
E 5 HOH X 20 229 23 HOH HOH . 
E 5 HOH X 21 230 24 HOH HOH . 
E 5 HOH X 22 231 25 HOH HOH . 
E 5 HOH X 23 232 26 HOH HOH . 
E 5 HOH X 24 233 28 HOH HOH . 
E 5 HOH X 25 234 29 HOH HOH . 
E 5 HOH X 26 235 30 HOH HOH . 
E 5 HOH X 27 236 31 HOH HOH . 
E 5 HOH X 28 237 32 HOH HOH . 
E 5 HOH X 29 238 34 HOH HOH . 
E 5 HOH X 30 239 35 HOH HOH . 
E 5 HOH X 31 240 38 HOH HOH . 
E 5 HOH X 32 241 39 HOH HOH . 
E 5 HOH X 33 242 40 HOH HOH . 
E 5 HOH X 34 243 41 HOH HOH . 
E 5 HOH X 35 244 42 HOH HOH . 
E 5 HOH X 36 245 43 HOH HOH . 
E 5 HOH X 37 246 44 HOH HOH . 
E 5 HOH X 38 247 45 HOH HOH . 
E 5 HOH X 39 248 46 HOH HOH . 
E 5 HOH X 40 249 47 HOH HOH . 
E 5 HOH X 41 250 48 HOH HOH . 
E 5 HOH X 42 251 49 HOH HOH . 
E 5 HOH X 43 252 50 HOH HOH . 
E 5 HOH X 44 253 52 HOH HOH . 
E 5 HOH X 45 254 53 HOH HOH . 
E 5 HOH X 46 255 54 HOH HOH . 
E 5 HOH X 47 256 3 HOH HOH . 
E 5 HOH X 48 257 6 HOH HOH . 
E 5 HOH X 49 258 7 HOH HOH . 
E 5 HOH X 50 259 8 HOH HOH . 
E 5 HOH X 51 260 9 HOH HOH . 
E 5 HOH X 52 261 10 HOH HOH . 
E 5 HOH X 53 262 13 HOH HOH . 
E 5 HOH X 54 263 17 HOH HOH . 
E 5 HOH X 55 264 19 HOH HOH . 
E 5 HOH X 56 265 20 HOH HOH . 
E 5 HOH X 57 266 21 HOH HOH . 
E 5 HOH X 58 267 22 HOH HOH . 
E 5 HOH X 59 268 23 HOH HOH . 
E 5 HOH X 60 269 24 HOH HOH . 
E 5 HOH X 61 270 25 HOH HOH . 
E 5 HOH X 62 271 26 HOH HOH . 
E 5 HOH X 63 272 29 HOH HOH . 
E 5 HOH X 64 273 36 HOH HOH . 
E 5 HOH X 65 274 40 HOH HOH . 
E 5 HOH X 66 275 42 HOH HOH . 
E 5 HOH X 67 276 43 HOH HOH . 
E 5 HOH X 68 277 44 HOH HOH . 
E 5 HOH X 69 278 49 HOH HOH . 
E 5 HOH X 70 279 50 HOH HOH . 
E 5 HOH X 71 280 52 HOH HOH . 
E 5 HOH X 72 281 55 HOH HOH . 
E 5 HOH X 73 282 58 HOH HOH . 
E 5 HOH X 74 283 64 HOH HOH . 
E 5 HOH X 75 284 70 HOH HOH . 
E 5 HOH X 76 285 79 HOH HOH . 
E 5 HOH X 77 286 80 HOH HOH . 
E 5 HOH X 78 287 106 HOH HOH . 
E 5 HOH X 79 288 117 HOH HOH . 
E 5 HOH X 80 289 140 HOH HOH . 
E 5 HOH X 81 290 148 HOH HOH . 
E 5 HOH X 82 291 161 HOH HOH . 
E 5 HOH X 83 292 162 HOH HOH . 
E 5 HOH X 84 293 163 HOH HOH . 
E 5 HOH X 85 294 165 HOH HOH . 
E 5 HOH X 86 295 166 HOH HOH . 
E 5 HOH X 87 296 167 HOH HOH . 
E 5 HOH X 88 297 169 HOH HOH . 
E 5 HOH X 89 298 172 HOH HOH . 
E 5 HOH X 90 299 2 HOH HOH . 
E 5 HOH X 91 300 5 HOH HOH . 
E 5 HOH X 92 301 8 HOH HOH . 
E 5 HOH X 93 302 9 HOH HOH . 
E 5 HOH X 94 303 12 HOH HOH . 
E 5 HOH X 95 304 14 HOH HOH . 
E 5 HOH X 96 305 24 HOH HOH . 
E 5 HOH X 97 306 48 HOH HOH . 
E 5 HOH X 98 307 63 HOH HOH . 
E 5 HOH X 99 308 74 HOH HOH . 
E 5 HOH X 100 309 133 HOH HOH . 
E 5 HOH X 101 310 12 HOH HOH . 
E 5 HOH X 102 311 13 HOH HOH . 
E 5 HOH X 103 312 49 HOH HOH . 
E 5 HOH X 104 313 93 HOH HOH . 
E 5 HOH X 105 314 142 HOH HOH . 
E 5 HOH X 106 315 143 HOH HOH . 
E 5 HOH X 107 316 145 HOH HOH . 
E 5 HOH X 108 317 1 HOH HOH . 
E 5 HOH X 109 318 4 HOH HOH . 
E 5 HOH X 110 319 18 HOH HOH . 
E 5 HOH X 111 320 73 HOH HOH . 
E 5 HOH X 112 321 84 HOH HOH . 
E 5 HOH X 113 322 148 HOH HOH . 
E 5 HOH X 114 323 98 HOH HOH . 
E 5 HOH X 115 324 139 HOH HOH . 
E 5 HOH X 116 325 47 HOH HOH . 
E 5 HOH X 117 326 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D2K . . . C 3 10.256 -1.791 13.15 1 20.01 ? N1 D2K 207 X 1 
HETATM 2 C C2 D2K . . . C 3 10.562 -2.584 12.137 1 21.92 ? C2 D2K 207 X 1 
HETATM 3 N N3 D2K . . . C 3 11.569 -2.319 11.349 1 22.8 ? N3 D2K 207 X 1 
HETATM 4 C C4 D2K . . . C 3 12.292 -1.245 11.523 1 24.68 ? C4 D2K 207 X 1 
HETATM 5 C C5 D2K . . . C 3 11.985 -0.349 12.538 1 24.81 ? C5 D2K 207 X 1 
HETATM 6 C C6 D2K . . . C 3 10.892 -0.671 13.372 1 20.67 ? C6 D2K 207 X 1 
HETATM 7 C CAA D2K . . . C 3 13.766 5.859 1.594 1 66.76 ? CAA D2K 207 X 1 
HETATM 8 C CAB D2K . . . C 3 16.6 1.817 13.714 1 44.63 ? CAB D2K 207 X 1 
HETATM 9 C CAC D2K . . . C 3 12.542 1.849 13.725 1 27.03 ? CAC D2K 207 X 1 
HETATM 10 N NAD D2K . . . C 3 9.88 -3.683 11.947 1 19.47 ? NAD D2K 207 X 1 
HETATM 11 N NAE D2K . . . C 3 10.518 0.061 14.378 1 18.62 ? NAE D2K 207 X 1 
HETATM 12 O OAF D2K . . . C 3 14.607 2.822 2.868 1 68.15 ? OAF D2K 207 X 1 
HETATM 13 C CAG D2K . . . C 3 18.135 2.322 9.317 1 45.98 ? CAG D2K 207 X 1 
HETATM 14 C CAH D2K . . . C 3 18.283 1.907 10.604 1 45.41 ? CAH D2K 207 X 1 
HETATM 15 C CAI D2K . . . C 3 14.008 0.068 10.8 1 33 ? CAI D2K 207 X 1 
HETATM 16 C CAJ D2K . . . C 3 15.821 2.663 9.721 1 44.26 ? CAJ D2K 207 X 1 
HETATM 17 C CAK D2K . . . C 3 14.568 4.579 1.382 1 66.4 ? CAK D2K 207 X 1 
HETATM 18 C CAL D2K . . . C 3 15.718 4.215 5.78 1 58.75 ? CAL D2K 207 X 1 
HETATM 19 C CAM D2K . . . C 3 15.515 3.451 7.105 1 57.41 ? CAM D2K 207 X 1 
HETATM 20 C CAN D2K . . . C 3 14.51 4.217 4.866 1 62.44 ? CAN D2K 207 X 1 
HETATM 21 C CAO D2K . . . C 3 14.696 2.269 11.877 1 37.84 ? CAO D2K 207 X 1 
HETATM 22 N NAP D2K . . . C 3 13.277 -1.018 10.701 1 29.08 ? NAP D2K 207 X 1 
HETATM 23 O OAS D2K . . . C 3 17.511 1.482 12.709 1 49.92 ? OAS D2K 207 X 1 
HETATM 24 O OAT D2K . . . C 3 15.283 4.81 2.544 1 67 ? OAT D2K 207 X 1 
HETATM 25 O OAU D2K . . . C 3 16.791 3.087 7.605 1 52.81 ? OAU D2K 207 X 1 
HETATM 26 C CAV D2K . . . C 3 14.825 3.904 3.393 1 66.27 ? CAV D2K 207 X 1 
HETATM 27 C CAX D2K . . . C 3 16.903 2.709 8.883 1 48.01 ? CAX D2K 207 X 1 
HETATM 28 C CAZ D2K . . . C 3 12.757 0.811 12.647 1 28.28 ? CAZ D2K 207 X 1 
HETATM 29 C CBA D2K . . . C 3 13.804 1.025 11.782 1 33.05 ? CBA D2K 207 X 1 
HETATM 30 C CBB D2K . . . C 3 15.958 2.251 11.029 1 43.73 ? CBB D2K 207 X 1 
HETATM 31 C CBC D2K . . . C 3 17.219 1.882 11.461 1 45 ? CBC D2K 207 X 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#