data_3NZA # _model_server_result.job_id Bj9TqFqGUVti3SMJSE6C_Q _model_server_result.datetime_utc '2024-11-08 16:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":208}' # _entry.id 3NZA # _exptl.entry_id 3NZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.57 _cell.angle_gamma 90 _cell.entry_id 3NZA _cell.length_a 36.959 _cell.length_b 42.679 _cell.length_c 60.609 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 297 n n PA O2A NDP sing 298 n n PA O5B NDP sing 299 n n PA O3 NDP sing 300 n n O2A HOA2 NDP sing 301 n n O5B C5B NDP sing 302 n n C5B C4B NDP sing 303 n n C5B H51A NDP sing 304 n n C5B H52A NDP sing 305 n n C4B O4B NDP sing 306 n n C4B C3B NDP sing 307 n n C4B H4B NDP sing 308 n n O4B C1B NDP sing 309 n n C3B O3B NDP sing 310 n n C3B C2B NDP sing 311 n n C3B H3B NDP sing 312 n n O3B HO3A NDP sing 313 n n C2B O2B NDP sing 314 n n C2B C1B NDP sing 315 n n C2B H2B NDP sing 316 n n O2B P2B NDP sing 317 n n C1B N9A NDP sing 318 n n C1B H1B NDP sing 319 n n N9A C8A NDP sing 320 n y N9A C4A NDP sing 321 n y C8A N7A NDP doub 322 n y C8A H8A NDP sing 323 n n N7A C5A NDP sing 324 n y C5A C6A NDP sing 325 n y C5A C4A NDP doub 326 n y C6A N6A NDP sing 327 n n C6A N1A NDP doub 328 n y N6A H61A NDP sing 329 n n N6A H62A NDP sing 330 n n N1A C2A NDP sing 331 n y C2A N3A NDP doub 332 n y C2A H2A NDP sing 333 n n N3A C4A NDP sing 334 n y O3 PN NDP sing 335 n n PN O1N NDP doub 336 n n PN O2N NDP sing 337 n n PN O5D NDP sing 338 n n O2N H21N NDP sing 339 n n O5D C5D NDP sing 340 n n C5D C4D NDP sing 341 n n C5D H51N NDP sing 342 n n C5D H52N NDP sing 343 n n C4D O4D NDP sing 344 n n C4D C3D NDP sing 345 n n C4D H4D NDP sing 346 n n O4D C1D NDP sing 347 n n C3D O3D NDP sing 348 n n C3D C2D NDP sing 349 n n C3D H3D NDP sing 350 n n O3D HO3N NDP sing 351 n n C2D O2D NDP sing 352 n n C2D C1D NDP sing 353 n n C2D H2D NDP sing 354 n n O2D HO2N NDP sing 355 n n C1D N1N NDP sing 356 n n C1D H1D NDP sing 357 n n N1N C2N NDP sing 358 n n N1N C6N NDP sing 359 n n C2N C3N NDP doub 360 n n C2N H2N NDP sing 361 n n C3N C7N NDP sing 362 n n C3N C4N NDP sing 363 n n C7N O7N NDP doub 364 n n C7N N7N NDP sing 365 n n N7N H71N NDP sing 366 n n N7N H72N NDP sing 367 n n C4N C5N NDP sing 368 n n C4N H41N NDP sing 369 n n C4N H42N NDP sing 370 n n C5N C6N NDP doub 371 n n C5N H5N NDP sing 372 n n C6N H6N NDP sing 373 n n P2B O1X NDP doub 374 n n P2B O2X NDP sing 375 n n P2B O3X NDP sing 376 n n O2X HOP2 NDP sing 377 n n O3X HOP3 NDP sing 378 n n # _atom_sites.entry_id 3NZA _atom_sites.fract_transf_matrix[1][1] 0.027057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002164 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 208 208 NDP NDP . C 3 D2K X 1 207 1 D2K D2K . D 4 CL X 1 209 1 CL CL . E 5 HOH X 1 210 1 HOH HOH . E 5 HOH X 2 211 2 HOH HOH . E 5 HOH X 3 212 3 HOH HOH . E 5 HOH X 4 213 4 HOH HOH . E 5 HOH X 5 214 5 HOH HOH . E 5 HOH X 6 215 6 HOH HOH . E 5 HOH X 7 216 7 HOH HOH . E 5 HOH X 8 217 11 HOH HOH . E 5 HOH X 9 218 12 HOH HOH . E 5 HOH X 10 219 13 HOH HOH . E 5 HOH X 11 220 14 HOH HOH . E 5 HOH X 12 221 15 HOH HOH . E 5 HOH X 13 222 16 HOH HOH . E 5 HOH X 14 223 17 HOH HOH . E 5 HOH X 15 224 18 HOH HOH . E 5 HOH X 16 225 19 HOH HOH . E 5 HOH X 17 226 20 HOH HOH . E 5 HOH X 18 227 21 HOH HOH . E 5 HOH X 19 228 22 HOH HOH . E 5 HOH X 20 229 23 HOH HOH . E 5 HOH X 21 230 24 HOH HOH . E 5 HOH X 22 231 25 HOH HOH . E 5 HOH X 23 232 26 HOH HOH . E 5 HOH X 24 233 28 HOH HOH . E 5 HOH X 25 234 29 HOH HOH . E 5 HOH X 26 235 30 HOH HOH . E 5 HOH X 27 236 31 HOH HOH . E 5 HOH X 28 237 32 HOH HOH . E 5 HOH X 29 238 34 HOH HOH . E 5 HOH X 30 239 35 HOH HOH . E 5 HOH X 31 240 38 HOH HOH . E 5 HOH X 32 241 39 HOH HOH . E 5 HOH X 33 242 40 HOH HOH . E 5 HOH X 34 243 41 HOH HOH . E 5 HOH X 35 244 42 HOH HOH . E 5 HOH X 36 245 43 HOH HOH . E 5 HOH X 37 246 44 HOH HOH . E 5 HOH X 38 247 45 HOH HOH . E 5 HOH X 39 248 46 HOH HOH . E 5 HOH X 40 249 47 HOH HOH . E 5 HOH X 41 250 48 HOH HOH . E 5 HOH X 42 251 49 HOH HOH . E 5 HOH X 43 252 50 HOH HOH . E 5 HOH X 44 253 52 HOH HOH . E 5 HOH X 45 254 53 HOH HOH . E 5 HOH X 46 255 54 HOH HOH . E 5 HOH X 47 256 3 HOH HOH . E 5 HOH X 48 257 6 HOH HOH . E 5 HOH X 49 258 7 HOH HOH . E 5 HOH X 50 259 8 HOH HOH . E 5 HOH X 51 260 9 HOH HOH . E 5 HOH X 52 261 10 HOH HOH . E 5 HOH X 53 262 13 HOH HOH . E 5 HOH X 54 263 17 HOH HOH . E 5 HOH X 55 264 19 HOH HOH . E 5 HOH X 56 265 20 HOH HOH . E 5 HOH X 57 266 21 HOH HOH . E 5 HOH X 58 267 22 HOH HOH . E 5 HOH X 59 268 23 HOH HOH . E 5 HOH X 60 269 24 HOH HOH . E 5 HOH X 61 270 25 HOH HOH . E 5 HOH X 62 271 26 HOH HOH . E 5 HOH X 63 272 29 HOH HOH . E 5 HOH X 64 273 36 HOH HOH . E 5 HOH X 65 274 40 HOH HOH . E 5 HOH X 66 275 42 HOH HOH . E 5 HOH X 67 276 43 HOH HOH . E 5 HOH X 68 277 44 HOH HOH . E 5 HOH X 69 278 49 HOH HOH . E 5 HOH X 70 279 50 HOH HOH . E 5 HOH X 71 280 52 HOH HOH . E 5 HOH X 72 281 55 HOH HOH . E 5 HOH X 73 282 58 HOH HOH . E 5 HOH X 74 283 64 HOH HOH . E 5 HOH X 75 284 70 HOH HOH . E 5 HOH X 76 285 79 HOH HOH . E 5 HOH X 77 286 80 HOH HOH . E 5 HOH X 78 287 106 HOH HOH . E 5 HOH X 79 288 117 HOH HOH . E 5 HOH X 80 289 140 HOH HOH . E 5 HOH X 81 290 148 HOH HOH . E 5 HOH X 82 291 161 HOH HOH . E 5 HOH X 83 292 162 HOH HOH . E 5 HOH X 84 293 163 HOH HOH . E 5 HOH X 85 294 165 HOH HOH . E 5 HOH X 86 295 166 HOH HOH . E 5 HOH X 87 296 167 HOH HOH . E 5 HOH X 88 297 169 HOH HOH . E 5 HOH X 89 298 172 HOH HOH . E 5 HOH X 90 299 2 HOH HOH . E 5 HOH X 91 300 5 HOH HOH . E 5 HOH X 92 301 8 HOH HOH . E 5 HOH X 93 302 9 HOH HOH . E 5 HOH X 94 303 12 HOH HOH . E 5 HOH X 95 304 14 HOH HOH . E 5 HOH X 96 305 24 HOH HOH . E 5 HOH X 97 306 48 HOH HOH . E 5 HOH X 98 307 63 HOH HOH . E 5 HOH X 99 308 74 HOH HOH . E 5 HOH X 100 309 133 HOH HOH . E 5 HOH X 101 310 12 HOH HOH . E 5 HOH X 102 311 13 HOH HOH . E 5 HOH X 103 312 49 HOH HOH . E 5 HOH X 104 313 93 HOH HOH . E 5 HOH X 105 314 142 HOH HOH . E 5 HOH X 106 315 143 HOH HOH . E 5 HOH X 107 316 145 HOH HOH . E 5 HOH X 108 317 1 HOH HOH . E 5 HOH X 109 318 4 HOH HOH . E 5 HOH X 110 319 18 HOH HOH . E 5 HOH X 111 320 73 HOH HOH . E 5 HOH X 112 321 84 HOH HOH . E 5 HOH X 113 322 148 HOH HOH . E 5 HOH X 114 323 98 HOH HOH . E 5 HOH X 115 324 139 HOH HOH . E 5 HOH X 116 325 47 HOH HOH . E 5 HOH X 117 326 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 15.717 4.229 23.068 1 37.95 ? PA NDP 208 X 1 HETATM 2 O O1A NDP . . . B 2 15.656 4.581 21.628 1 26.65 ? O1A NDP 208 X 1 HETATM 3 O O2A NDP . . . B 2 14.474 3.79 23.782 1 29.21 ? O2A NDP 208 X 1 HETATM 4 O O5B NDP . . . B 2 16.395 5.274 24.144 1 39.08 ? O5B NDP 208 X 1 HETATM 5 C C5B NDP . . . B 2 16.808 6.49 23.771 1 42.81 ? C5B NDP 208 X 1 HETATM 6 C C4B NDP . . . B 2 16.484 7.533 24.848 1 44.74 ? C4B NDP 208 X 1 HETATM 7 O O4B NDP . . . B 2 15.112 8.022 24.569 1 43.76 ? O4B NDP 208 X 1 HETATM 8 C C3B NDP . . . B 2 16.507 7.382 26.393 1 47.09 ? C3B NDP 208 X 1 HETATM 9 O O3B NDP . . . B 2 17.816 7.341 26.963 1 47.12 ? O3B NDP 208 X 1 HETATM 10 C C2B NDP . . . B 2 16.059 8.833 26.361 1 45.8 ? C2B NDP 208 X 1 HETATM 11 O O2B NDP . . . B 2 16.135 9.562 27.529 1 47.57 ? O2B NDP 208 X 1 HETATM 12 C C1B NDP . . . B 2 14.663 8.682 25.753 1 46.15 ? C1B NDP 208 X 1 HETATM 13 N N9A NDP . . . B 2 13.537 7.905 26.419 1 47.11 ? N9A NDP 208 X 1 HETATM 14 C C8A NDP . . . B 2 13.13 6.647 26.137 1 46.11 ? C8A NDP 208 X 1 HETATM 15 N N7A NDP . . . B 2 12.082 6.321 26.914 1 45.29 ? N7A NDP 208 X 1 HETATM 16 C C5A NDP . . . B 2 11.81 7.382 27.692 1 48.65 ? C5A NDP 208 X 1 HETATM 17 C C6A NDP . . . B 2 10.843 7.652 28.681 1 50.37 ? C6A NDP 208 X 1 HETATM 18 N N6A NDP . . . B 2 9.928 6.72 29.037 1 51.01 ? N6A NDP 208 X 1 HETATM 19 N N1A NDP . . . B 2 10.845 8.876 29.268 1 48.65 ? N1A NDP 208 X 1 HETATM 20 C C2A NDP . . . B 2 11.733 9.805 28.921 1 48.81 ? C2A NDP 208 X 1 HETATM 21 N N3A NDP . . . B 2 12.663 9.598 27.993 1 48.73 ? N3A NDP 208 X 1 HETATM 22 C C4A NDP . . . B 2 12.724 8.394 27.364 1 49.06 ? C4A NDP 208 X 1 HETATM 23 O O3 NDP . . . B 2 17.035 3.291 23.17 1 36.71 ? O3 NDP 208 X 1 HETATM 24 P PN NDP . . . B 2 17.283 1.801 23.733 1 42.44 ? PN NDP 208 X 1 HETATM 25 O O1N NDP . . . B 2 16.272 1.398 24.735 1 40.79 ? O1N NDP 208 X 1 HETATM 26 O O2N NDP . . . B 2 18.711 1.808 24.179 1 43.33 ? O2N NDP 208 X 1 HETATM 27 O O5D NDP . . . B 2 17.193 0.991 22.338 1 40.24 ? O5D NDP 208 X 1 HETATM 28 C C5D NDP . . . B 2 17.858 1.499 21.165 1 39.51 ? C5D NDP 208 X 1 HETATM 29 C C4D NDP . . . B 2 18.366 0.289 20.366 1 36.2 ? C4D NDP 208 X 1 HETATM 30 O O4D NDP . . . B 2 17.071 -0.239 19.873 1 39.23 ? O4D NDP 208 X 1 HETATM 31 C C3D NDP . . . B 2 19.26 0.607 19.143 1 34.1 ? C3D NDP 208 X 1 HETATM 32 O O3D NDP . . . B 2 20.127 -0.529 18.901 1 33.6 ? O3D NDP 208 X 1 HETATM 33 C C2D NDP . . . B 2 18.285 0.686 17.979 1 36.13 ? C2D NDP 208 X 1 HETATM 34 O O2D NDP . . . B 2 18.985 0.338 16.723 1 33.45 ? O2D NDP 208 X 1 HETATM 35 C C1D NDP . . . B 2 17.255 -0.41 18.412 1 37.35 ? C1D NDP 208 X 1 HETATM 36 N N1N NDP . . . B 2 15.929 -0.426 17.721 1 36.29 ? N1N NDP 208 X 1 HETATM 37 C C2N NDP . . . B 2 15.482 -1.643 17.155 1 32.46 ? C2N NDP 208 X 1 HETATM 38 C C3N NDP . . . B 2 14.235 -1.634 16.525 1 27.68 ? C3N NDP 208 X 1 HETATM 39 C C7N NDP . . . B 2 13.699 -2.906 15.857 1 23.48 ? C7N NDP 208 X 1 HETATM 40 O O7N NDP . . . B 2 12.598 -2.829 15.296 1 23.52 ? O7N NDP 208 X 1 HETATM 41 N N7N NDP . . . B 2 14.566 -3.92 15.771 1 19.45 ? N7N NDP 208 X 1 HETATM 42 C C4N NDP . . . B 2 13.47 -0.474 16.425 1 28.24 ? C4N NDP 208 X 1 HETATM 43 C C5N NDP . . . B 2 13.896 0.724 16.973 1 32.7 ? C5N NDP 208 X 1 HETATM 44 C C6N NDP . . . B 2 15.12 0.749 17.63 1 34.64 ? C6N NDP 208 X 1 HETATM 45 P P2B NDP . . . B 2 17.525 10.547 27.719 1 46.58 ? P2B NDP 208 X 1 HETATM 46 O O1X NDP . . . B 2 17.078 11.093 29.208 1 47.49 ? O1X NDP 208 X 1 HETATM 47 O O2X NDP . . . B 2 17.603 11.668 26.506 1 40.41 ? O2X NDP 208 X 1 HETATM 48 O O3X NDP . . . B 2 18.738 9.696 27.738 1 46.51 ? O3X NDP 208 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #