data_3NZB # _model_server_result.job_id X6plPTcwI3mK8pCjNhoOrw _model_server_result.datetime_utc '2024-11-24 03:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 3NZB # _exptl.entry_id 3NZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 6-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}hexanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.62 _cell.angle_gamma 90 _cell.entry_id 3NZB _cell.length_a 36.86 _cell.length_b 42.709 _cell.length_c 60.585 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C24 H31 N5 O4' _chem_comp.formula_weight 453.534 _chem_comp.id D2N _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 6-{3-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenoxy}hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 D2N doub 83 n y N1 C6 D2N sing 84 n y N3 C2 D2N sing 85 n y NAD C2 D2N sing 86 n n N3 C4 D2N doub 87 n y NAR C4 D2N sing 88 n y C4 C5 D2N sing 89 n y C5 CBB D2N sing 90 n y C5 C6 D2N doub 91 n y C6 NAE D2N sing 92 n n CAA CAK D2N sing 93 n n CAA HAA D2N sing 94 n n CAA HAAA D2N sing 95 n n CAA HAAB D2N sing 96 n n OAU CAB D2N sing 97 n n CAB HAB D2N sing 98 n n CAB HABA D2N sing 99 n n CAB HABB D2N sing 100 n n CBB CAC D2N sing 101 n n CAC HAC D2N sing 102 n n CAC HACA D2N sing 103 n n CAC HACB D2N sing 104 n n NAD HNAD D2N sing 105 n n NAD HNAA D2N sing 106 n n NAE HNAE D2N sing 107 n n NAE HNAB D2N sing 108 n n OAF CAX D2N doub 109 n n CAH CAG D2N doub 110 n y CAG CAZ D2N sing 111 n y CAG HAG D2N sing 112 n n CAH CBE D2N sing 113 n y CAH HAH D2N sing 114 n n NAR CAI D2N doub 115 n y CAI CBC D2N sing 116 n y CAI HAI D2N sing 117 n n CAZ CAJ D2N doub 118 n y CBD CAJ D2N sing 119 n y CAJ HAJ D2N sing 120 n n OAV CAK D2N sing 121 n n CAK HAK D2N sing 122 n n CAK HAKA D2N sing 123 n n CAM CAL D2N sing 124 n n CAN CAL D2N sing 125 n n CAL HAL D2N sing 126 n n CAL HALA D2N sing 127 n n CAM CAO D2N sing 128 n n CAM HAM D2N sing 129 n n CAM HAMA D2N sing 130 n n CAP CAN D2N sing 131 n n CAN HAN D2N sing 132 n n CAN HANA D2N sing 133 n n CAO OAW D2N sing 134 n n CAO HAO D2N sing 135 n n CAO HAOA D2N sing 136 n n CAP CAX D2N sing 137 n n CAP HAP D2N sing 138 n n CAP HAPA D2N sing 139 n n CBD CAQ D2N sing 140 n n CBC CAQ D2N sing 141 n n CAQ HAQ D2N sing 142 n n CAQ HAQA D2N sing 143 n n OAU CBE D2N sing 144 n n CAX OAV D2N sing 145 n n CAZ OAW D2N sing 146 n n CBC CBB D2N doub 147 n y CBE CBD D2N doub 148 n y # _atom_sites.entry_id 3NZB _atom_sites.fract_transf_matrix[1][1] 0.027129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2N X 1 207 1 D2N D2N . C 3 NDP X 1 208 1 NDP NAP . D 2 D2N X 1 209 1 D2N D2N . E 4 HOH X 1 210 1 HOH HOH . E 4 HOH X 2 211 2 HOH HOH . E 4 HOH X 3 212 3 HOH HOH . E 4 HOH X 4 213 4 HOH HOH . E 4 HOH X 5 214 5 HOH HOH . E 4 HOH X 6 215 6 HOH HOH . E 4 HOH X 7 216 7 HOH HOH . E 4 HOH X 8 217 8 HOH HOH . E 4 HOH X 9 218 9 HOH HOH . E 4 HOH X 10 219 10 HOH HOH . E 4 HOH X 11 220 11 HOH HOH . E 4 HOH X 12 221 12 HOH HOH . E 4 HOH X 13 222 13 HOH HOH . E 4 HOH X 14 223 14 HOH HOH . E 4 HOH X 15 224 15 HOH HOH . E 4 HOH X 16 225 17 HOH HOH . E 4 HOH X 17 226 18 HOH HOH . E 4 HOH X 18 227 19 HOH HOH . E 4 HOH X 19 228 20 HOH HOH . E 4 HOH X 20 229 21 HOH HOH . E 4 HOH X 21 230 22 HOH HOH . E 4 HOH X 22 231 23 HOH HOH . E 4 HOH X 23 232 25 HOH HOH . E 4 HOH X 24 233 26 HOH HOH . E 4 HOH X 25 234 28 HOH HOH . E 4 HOH X 26 235 29 HOH HOH . E 4 HOH X 27 236 30 HOH HOH . E 4 HOH X 28 237 31 HOH HOH . E 4 HOH X 29 238 32 HOH HOH . E 4 HOH X 30 239 33 HOH HOH . E 4 HOH X 31 240 34 HOH HOH . E 4 HOH X 32 241 35 HOH HOH . E 4 HOH X 33 242 36 HOH HOH . E 4 HOH X 34 243 37 HOH HOH . E 4 HOH X 35 244 38 HOH HOH . E 4 HOH X 36 245 39 HOH HOH . E 4 HOH X 37 246 40 HOH HOH . E 4 HOH X 38 247 41 HOH HOH . E 4 HOH X 39 248 42 HOH HOH . E 4 HOH X 40 249 43 HOH HOH . E 4 HOH X 41 250 44 HOH HOH . E 4 HOH X 42 251 45 HOH HOH . E 4 HOH X 43 252 46 HOH HOH . E 4 HOH X 44 253 47 HOH HOH . E 4 HOH X 45 254 48 HOH HOH . E 4 HOH X 46 255 49 HOH HOH . E 4 HOH X 47 256 51 HOH HOH . E 4 HOH X 48 257 52 HOH HOH . E 4 HOH X 49 258 53 HOH HOH . E 4 HOH X 50 259 54 HOH HOH . E 4 HOH X 51 260 55 HOH HOH . E 4 HOH X 52 261 56 HOH HOH . E 4 HOH X 53 262 57 HOH HOH . E 4 HOH X 54 263 58 HOH HOH . E 4 HOH X 55 264 59 HOH HOH . E 4 HOH X 56 265 60 HOH HOH . E 4 HOH X 57 266 61 HOH HOH . E 4 HOH X 58 267 62 HOH HOH . E 4 HOH X 59 268 63 HOH HOH . E 4 HOH X 60 269 64 HOH HOH . E 4 HOH X 61 270 65 HOH HOH . E 4 HOH X 62 271 66 HOH HOH . E 4 HOH X 63 272 67 HOH HOH . E 4 HOH X 64 273 68 HOH HOH . E 4 HOH X 65 274 69 HOH HOH . E 4 HOH X 66 275 70 HOH HOH . E 4 HOH X 67 276 71 HOH HOH . E 4 HOH X 68 277 72 HOH HOH . E 4 HOH X 69 278 73 HOH HOH . E 4 HOH X 70 279 74 HOH HOH . E 4 HOH X 71 280 75 HOH HOH . E 4 HOH X 72 281 76 HOH HOH . E 4 HOH X 73 282 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D2N . A . B 2 10.224 -1.751 13.123 0.5 16.41 ? N1 D2N 207 X 1 HETATM 2 C C2 D2N . A . B 2 10.547 -2.587 12.124 0.5 16.87 ? C2 D2N 207 X 1 HETATM 3 N N3 D2N . A . B 2 11.622 -2.354 11.357 0.5 19.91 ? N3 D2N 207 X 1 HETATM 4 C C4 D2N . A . B 2 12.413 -1.295 11.601 0.5 20.6 ? C4 D2N 207 X 1 HETATM 5 C C5 D2N . A . B 2 12.121 -0.381 12.606 0.5 20.15 ? C5 D2N 207 X 1 HETATM 6 C C6 D2N . A . B 2 10.986 -0.682 13.404 0.5 18.98 ? C6 D2N 207 X 1 HETATM 7 C CAA D2N . A . B 2 27.157 -0.312 11.601 0.5 29.5 ? CAA D2N 207 X 1 HETATM 8 C CAB D2N . A . B 2 14.102 3.338 10.744 0.5 30.66 ? CAB D2N 207 X 1 HETATM 9 C CAC D2N . A . B 2 12.83 1.799 13.86 0.5 21.96 ? CAC D2N 207 X 1 HETATM 10 N NAD D2N . A . B 2 9.779 -3.651 11.817 0.5 17.24 ? NAD D2N 207 X 1 HETATM 11 N NAE D2N . A . B 2 10.552 0.05 14.445 0.5 18.36 ? NAE D2N 207 X 1 HETATM 12 O OAF D2N . A . B 2 25.916 -0.948 9.742 0.5 35.16 ? OAF D2N 207 X 1 HETATM 13 C CAG D2N . A . B 2 18.139 2.214 8.928 0.5 26.99 ? CAG D2N 207 X 1 HETATM 14 C CAH D2N . A . B 2 16.895 2.783 8.704 0.5 29.66 ? CAH D2N 207 X 1 HETATM 15 C CAI D2N . A . B 2 14.291 -0.118 10.922 0.5 21.82 ? CAI D2N 207 X 1 HETATM 16 C CAJ D2N . A . B 2 17.438 1.525 11.143 0.5 30 ? CAJ D2N 207 X 1 HETATM 17 C CAK D2N . A . B 2 25.708 -0.187 12.101 0.5 29.12 ? CAK D2N 207 X 1 HETATM 18 C CAL D2N . A . B 2 21.366 -0.955 10.046 0.5 29.62 ? CAL D2N 207 X 1 HETATM 19 C CAM D2N . A . B 2 20.659 -0.462 8.782 0.5 28.35 ? CAM D2N 207 X 1 HETATM 20 C CAN D2N . A . B 2 22.701 -1.587 9.636 0.5 29.37 ? CAN D2N 207 X 1 HETATM 21 C CAO D2N . A . B 2 20.197 0.975 8.936 0.5 29.02 ? CAO D2N 207 X 1 HETATM 22 C CAP D2N . A . B 2 23.655 -0.537 9.075 0.5 31.62 ? CAP D2N 207 X 1 HETATM 23 C CAQ D2N . A . B 2 15.096 2.025 12.041 0.5 26.92 ? CAQ D2N 207 X 1 HETATM 24 N NAR D2N . A . B 2 13.481 -1.17 10.785 0.5 23.13 ? NAR D2N 207 X 1 HETATM 25 O OAU D2N . A . B 2 14.728 3.286 9.458 0.5 30.66 ? OAU D2N 207 X 1 HETATM 26 O OAV D2N . A . B 2 24.807 0.4 11.127 0.5 32.25 ? OAV D2N 207 X 1 HETATM 27 O OAW D2N . A . B 2 19.669 1.065 10.27 0.5 27.47 ? OAW D2N 207 X 1 HETATM 28 C CAX D2N . A . B 2 24.868 -0.36 9.994 0.5 32.23 ? CAX D2N 207 X 1 HETATM 29 C CAZ D2N . A . B 2 18.415 1.59 10.13 0.5 29.29 ? CAZ D2N 207 X 1 HETATM 30 C CBB D2N . A . B 2 12.992 0.71 12.775 0.5 21.75 ? CBB D2N 207 X 1 HETATM 31 C CBC D2N . A . B 2 14.09 0.836 11.917 0.5 23.4 ? CBC D2N 207 X 1 HETATM 32 C CBD D2N . A . B 2 16.176 2.093 10.924 0.5 27.24 ? CBD D2N 207 X 1 HETATM 33 C CBE D2N . A . B 2 15.932 2.723 9.7 0.5 27.48 ? CBE D2N 207 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #