data_3NZB # _model_server_result.job_id LbzT3MhQIVU5vQIuu4D8dA _model_server_result.datetime_utc '2024-11-08 19:07:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3nzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":208}' # _entry.id 3NZB # _exptl.entry_id 3NZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.62 _cell.angle_gamma 90 _cell.entry_id 3NZB _cell.length_a 36.86 _cell.length_b 42.709 _cell.length_c 60.585 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3NZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 303 n n PA O2A NDP sing 304 n n PA O5B NDP sing 305 n n PA O3 NDP sing 306 n n O2A HOA2 NDP sing 307 n n O5B C5B NDP sing 308 n n C5B C4B NDP sing 309 n n C5B H51A NDP sing 310 n n C5B H52A NDP sing 311 n n C4B O4B NDP sing 312 n n C4B C3B NDP sing 313 n n C4B H4B NDP sing 314 n n O4B C1B NDP sing 315 n n C3B O3B NDP sing 316 n n C3B C2B NDP sing 317 n n C3B H3B NDP sing 318 n n O3B HO3A NDP sing 319 n n C2B O2B NDP sing 320 n n C2B C1B NDP sing 321 n n C2B H2B NDP sing 322 n n O2B P2B NDP sing 323 n n C1B N9A NDP sing 324 n n C1B H1B NDP sing 325 n n N9A C8A NDP sing 326 n y N9A C4A NDP sing 327 n y C8A N7A NDP doub 328 n y C8A H8A NDP sing 329 n n N7A C5A NDP sing 330 n y C5A C6A NDP sing 331 n y C5A C4A NDP doub 332 n y C6A N6A NDP sing 333 n n C6A N1A NDP doub 334 n y N6A H61A NDP sing 335 n n N6A H62A NDP sing 336 n n N1A C2A NDP sing 337 n y C2A N3A NDP doub 338 n y C2A H2A NDP sing 339 n n N3A C4A NDP sing 340 n y O3 PN NDP sing 341 n n PN O1N NDP doub 342 n n PN O2N NDP sing 343 n n PN O5D NDP sing 344 n n O2N H21N NDP sing 345 n n O5D C5D NDP sing 346 n n C5D C4D NDP sing 347 n n C5D H51N NDP sing 348 n n C5D H52N NDP sing 349 n n C4D O4D NDP sing 350 n n C4D C3D NDP sing 351 n n C4D H4D NDP sing 352 n n O4D C1D NDP sing 353 n n C3D O3D NDP sing 354 n n C3D C2D NDP sing 355 n n C3D H3D NDP sing 356 n n O3D HO3N NDP sing 357 n n C2D O2D NDP sing 358 n n C2D C1D NDP sing 359 n n C2D H2D NDP sing 360 n n O2D HO2N NDP sing 361 n n C1D N1N NDP sing 362 n n C1D H1D NDP sing 363 n n N1N C2N NDP sing 364 n n N1N C6N NDP sing 365 n n C2N C3N NDP doub 366 n n C2N H2N NDP sing 367 n n C3N C7N NDP sing 368 n n C3N C4N NDP sing 369 n n C7N O7N NDP doub 370 n n C7N N7N NDP sing 371 n n N7N H71N NDP sing 372 n n N7N H72N NDP sing 373 n n C4N C5N NDP sing 374 n n C4N H41N NDP sing 375 n n C4N H42N NDP sing 376 n n C5N C6N NDP doub 377 n n C5N H5N NDP sing 378 n n C6N H6N NDP sing 379 n n P2B O1X NDP doub 380 n n P2B O2X NDP sing 381 n n P2B O3X NDP sing 382 n n O2X HOP2 NDP sing 383 n n O3X HOP3 NDP sing 384 n n # _atom_sites.entry_id 3NZB _atom_sites.fract_transf_matrix[1][1] 0.027129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D2N X 1 207 1 D2N D2N . C 3 NDP X 1 208 1 NDP NAP . D 2 D2N X 1 209 1 D2N D2N . E 4 HOH X 1 210 1 HOH HOH . E 4 HOH X 2 211 2 HOH HOH . E 4 HOH X 3 212 3 HOH HOH . E 4 HOH X 4 213 4 HOH HOH . E 4 HOH X 5 214 5 HOH HOH . E 4 HOH X 6 215 6 HOH HOH . E 4 HOH X 7 216 7 HOH HOH . E 4 HOH X 8 217 8 HOH HOH . E 4 HOH X 9 218 9 HOH HOH . E 4 HOH X 10 219 10 HOH HOH . E 4 HOH X 11 220 11 HOH HOH . E 4 HOH X 12 221 12 HOH HOH . E 4 HOH X 13 222 13 HOH HOH . E 4 HOH X 14 223 14 HOH HOH . E 4 HOH X 15 224 15 HOH HOH . E 4 HOH X 16 225 17 HOH HOH . E 4 HOH X 17 226 18 HOH HOH . E 4 HOH X 18 227 19 HOH HOH . E 4 HOH X 19 228 20 HOH HOH . E 4 HOH X 20 229 21 HOH HOH . E 4 HOH X 21 230 22 HOH HOH . E 4 HOH X 22 231 23 HOH HOH . E 4 HOH X 23 232 25 HOH HOH . E 4 HOH X 24 233 26 HOH HOH . E 4 HOH X 25 234 28 HOH HOH . E 4 HOH X 26 235 29 HOH HOH . E 4 HOH X 27 236 30 HOH HOH . E 4 HOH X 28 237 31 HOH HOH . E 4 HOH X 29 238 32 HOH HOH . E 4 HOH X 30 239 33 HOH HOH . E 4 HOH X 31 240 34 HOH HOH . E 4 HOH X 32 241 35 HOH HOH . E 4 HOH X 33 242 36 HOH HOH . E 4 HOH X 34 243 37 HOH HOH . E 4 HOH X 35 244 38 HOH HOH . E 4 HOH X 36 245 39 HOH HOH . E 4 HOH X 37 246 40 HOH HOH . E 4 HOH X 38 247 41 HOH HOH . E 4 HOH X 39 248 42 HOH HOH . E 4 HOH X 40 249 43 HOH HOH . E 4 HOH X 41 250 44 HOH HOH . E 4 HOH X 42 251 45 HOH HOH . E 4 HOH X 43 252 46 HOH HOH . E 4 HOH X 44 253 47 HOH HOH . E 4 HOH X 45 254 48 HOH HOH . E 4 HOH X 46 255 49 HOH HOH . E 4 HOH X 47 256 51 HOH HOH . E 4 HOH X 48 257 52 HOH HOH . E 4 HOH X 49 258 53 HOH HOH . E 4 HOH X 50 259 54 HOH HOH . E 4 HOH X 51 260 55 HOH HOH . E 4 HOH X 52 261 56 HOH HOH . E 4 HOH X 53 262 57 HOH HOH . E 4 HOH X 54 263 58 HOH HOH . E 4 HOH X 55 264 59 HOH HOH . E 4 HOH X 56 265 60 HOH HOH . E 4 HOH X 57 266 61 HOH HOH . E 4 HOH X 58 267 62 HOH HOH . E 4 HOH X 59 268 63 HOH HOH . E 4 HOH X 60 269 64 HOH HOH . E 4 HOH X 61 270 65 HOH HOH . E 4 HOH X 62 271 66 HOH HOH . E 4 HOH X 63 272 67 HOH HOH . E 4 HOH X 64 273 68 HOH HOH . E 4 HOH X 65 274 69 HOH HOH . E 4 HOH X 66 275 70 HOH HOH . E 4 HOH X 67 276 71 HOH HOH . E 4 HOH X 68 277 72 HOH HOH . E 4 HOH X 69 278 73 HOH HOH . E 4 HOH X 70 279 74 HOH HOH . E 4 HOH X 71 280 75 HOH HOH . E 4 HOH X 72 281 76 HOH HOH . E 4 HOH X 73 282 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 15.799 4.175 23.163 1 25.76 ? PA NDP 208 X 1 HETATM 2 O O1A NDP . . . C 3 15.688 4.566 21.832 1 20.83 ? O1A NDP 208 X 1 HETATM 3 O O2A NDP . . . C 3 14.54 3.748 23.889 1 25.08 ? O2A NDP 208 X 1 HETATM 4 O O5B NDP . . . C 3 16.312 5.608 23.818 1 30.02 ? O5B NDP 208 X 1 HETATM 5 C C5B NDP . . . C 3 16.549 5.672 25.173 1 30.46 ? C5B NDP 208 X 1 HETATM 6 C C4B NDP . . . C 3 16.625 7.109 25.458 1 31.76 ? C4B NDP 208 X 1 HETATM 7 O O4B NDP . . . C 3 15.394 7.765 24.998 1 30.19 ? O4B NDP 208 X 1 HETATM 8 C C3B NDP . . . C 3 16.632 7.148 26.991 1 28.64 ? C3B NDP 208 X 1 HETATM 9 O O3B NDP . . . C 3 17.974 7.156 27.537 1 37.85 ? O3B NDP 208 X 1 HETATM 10 C C2B NDP . . . C 3 15.891 8.457 27.225 1 31.43 ? C2B NDP 208 X 1 HETATM 11 O O2B NDP . . . C 3 16.624 9.542 26.778 1 30.17 ? O2B NDP 208 X 1 HETATM 12 C C1B NDP . . . C 3 14.793 8.411 26.165 1 32.46 ? C1B NDP 208 X 1 HETATM 13 N N9A NDP . . . C 3 13.581 7.734 26.706 1 31.3 ? N9A NDP 208 X 1 HETATM 14 C C8A NDP . . . C 3 13.143 6.492 26.37 1 30.2 ? C8A NDP 208 X 1 HETATM 15 N N7A NDP . . . C 3 12.027 6.212 27.032 1 27.44 ? N7A NDP 208 X 1 HETATM 16 C C5A NDP . . . C 3 11.722 7.301 27.775 1 28.64 ? C5A NDP 208 X 1 HETATM 17 C C6A NDP . . . C 3 10.683 7.621 28.63 1 27.67 ? C6A NDP 208 X 1 HETATM 18 N N6A NDP . . . C 3 9.724 6.714 28.882 1 33 ? N6A NDP 208 X 1 HETATM 19 N N1A NDP . . . C 3 10.664 8.822 29.218 1 27.63 ? N1A NDP 208 X 1 HETATM 20 C C2A NDP . . . C 3 11.614 9.708 28.969 1 28.68 ? C2A NDP 208 X 1 HETATM 21 N N3A NDP . . . C 3 12.624 9.47 28.165 1 28.61 ? N3A NDP 208 X 1 HETATM 22 C C4A NDP . . . C 3 12.696 8.263 27.567 1 28.21 ? C4A NDP 208 X 1 HETATM 23 O O3 NDP . . . C 3 17.1 3.231 23.248 1 28.05 ? O3 NDP 208 X 1 HETATM 24 P PN NDP . . . C 3 17.333 1.786 23.743 1 30.32 ? PN NDP 208 X 1 HETATM 25 O O1N NDP . . . C 3 16.337 1.484 24.744 1 31.06 ? O1N NDP 208 X 1 HETATM 26 O O2N NDP . . . C 3 18.803 1.664 24.176 1 32.96 ? O2N NDP 208 X 1 HETATM 27 O O5D NDP . . . C 3 17.207 0.972 22.376 1 28.78 ? O5D NDP 208 X 1 HETATM 28 C C5D NDP . . . C 3 17.9 1.438 21.183 1 31.4 ? C5D NDP 208 X 1 HETATM 29 C C4D NDP . . . C 3 18.453 0.251 20.406 1 29.73 ? C4D NDP 208 X 1 HETATM 30 O O4D NDP . . . C 3 17.195 -0.29 19.882 1 31.07 ? O4D NDP 208 X 1 HETATM 31 C C3D NDP . . . C 3 19.338 0.432 19.157 1 29.36 ? C3D NDP 208 X 1 HETATM 32 O O3D NDP . . . C 3 20.104 -0.782 19.087 1 27.42 ? O3D NDP 208 X 1 HETATM 33 C C2D NDP . . . C 3 18.375 0.526 18.006 1 29.21 ? C2D NDP 208 X 1 HETATM 34 O O2D NDP . . . C 3 19.028 0.11 16.753 1 27.13 ? O2D NDP 208 X 1 HETATM 35 C C1D NDP . . . C 3 17.416 -0.571 18.508 1 27.28 ? C1D NDP 208 X 1 HETATM 36 N N1N NDP . . . C 3 16.118 -0.491 17.796 1 24.65 ? N1N NDP 208 X 1 HETATM 37 C C2N NDP . . . C 3 15.61 -1.707 17.203 1 27.26 ? C2N NDP 208 X 1 HETATM 38 C C3N NDP . . . C 3 14.359 -1.62 16.587 1 23 ? C3N NDP 208 X 1 HETATM 39 C C7N NDP . . . C 3 13.809 -2.894 15.896 1 20.65 ? C7N NDP 208 X 1 HETATM 40 O O7N NDP . . . C 3 12.669 -2.809 15.394 1 20.98 ? O7N NDP 208 X 1 HETATM 41 N N7N NDP . . . C 3 14.596 -3.981 15.923 1 17.49 ? N7N NDP 208 X 1 HETATM 42 C C4N NDP . . . C 3 13.558 -0.325 16.477 1 22.09 ? C4N NDP 208 X 1 HETATM 43 C C5N NDP . . . C 3 14.129 0.789 17.142 1 22.1 ? C5N NDP 208 X 1 HETATM 44 C C6N NDP . . . C 3 15.361 0.71 17.767 1 22.98 ? C6N NDP 208 X 1 HETATM 45 P P2B NDP . . . C 3 17.649 10.452 27.76 1 32.33 ? P2B NDP 208 X 1 HETATM 46 O O1X NDP . . . C 3 17.654 11.493 26.615 1 22.41 ? O1X NDP 208 X 1 HETATM 47 O O2X NDP . . . C 3 18.904 9.459 28.169 1 29.1 ? O2X NDP 208 X 1 HETATM 48 O O3X NDP . . . C 3 16.905 10.847 28.988 1 31.27 ? O3X NDP 208 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #