data_3NZC
#
_model_server_result.job_id            eCLpOx7FCA4AapuW2I2UPA 
_model_server_result.datetime_utc      '2024-11-14 04:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nzc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":207}' 
#
_entry.id    3NZC 
#
_exptl.entry_id    3NZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              415.488 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[2-methoxy-5-(2-phenylethoxy)benzyl]-5-methylpyrido[2,3-d]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.77 
_cell.angle_gamma         90 
_cell.entry_id            3NZC 
_cell.length_a            36.859 
_cell.length_b            42.667 
_cell.length_c            59.936 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3NZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H25 N5 O2' 
_chem_comp.formula_weight    415.488 
_chem_comp.id                D2O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[2-methoxy-5-(2-phenylethoxy)benzyl]-5-methylpyrido[2,3-d]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 D2O doub 83 n y 
N1 C6 D2O sing 84 n y 
C2 N3 D2O sing 85 n y 
C2 NAC D2O sing 86 n n 
N3 C4 D2O doub 87 n y 
C4 C5 D2O sing 88 n y 
C4 NAQ D2O sing 89 n y 
C5 C6 D2O doub 90 n y 
C5 CBB D2O sing 91 n y 
C6 NAD D2O sing 92 n n 
CAA OAT D2O sing 93 n n 
CAB CBB D2O sing 94 n n 
CAE CAF D2O doub 95 n y 
CAE CAG D2O sing 96 n y 
CAF CAH D2O sing 97 n y 
CAG CAI D2O doub 98 n y 
CAH CAV D2O doub 99 n y 
CAI CAV D2O sing 100 n y 
CAJ CAK D2O doub 101 n y 
CAJ CAW D2O sing 102 n y 
CAK CBC D2O sing 103 n y 
CAL NAQ D2O doub 104 n y 
CAL CAY D2O sing 105 n y 
CAM CAW D2O doub 106 n y 
CAM CAZ D2O sing 107 n y 
CAN CAO D2O sing 108 n n 
CAN OAU D2O sing 109 n n 
CAO CAV D2O sing 110 n n 
CAP CAY D2O sing 111 n n 
CAP CAZ D2O sing 112 n n 
OAT CBC D2O sing 113 n n 
OAU CAW D2O sing 114 n n 
CAY CBB D2O doub 115 n y 
CAZ CBC D2O doub 116 n y 
CAA HAA D2O sing 117 n n 
CAA HAAA D2O sing 118 n n 
CAA HAAB D2O sing 119 n n 
CAB HAB D2O sing 120 n n 
CAB HABA D2O sing 121 n n 
CAB HABB D2O sing 122 n n 
NAC HNAC D2O sing 123 n n 
NAC HNAA D2O sing 124 n n 
NAD HNAD D2O sing 125 n n 
NAD HNAB D2O sing 126 n n 
CAE HAE D2O sing 127 n n 
CAF HAF D2O sing 128 n n 
CAG HAG D2O sing 129 n n 
CAH HAH D2O sing 130 n n 
CAI HAI D2O sing 131 n n 
CAJ HAJ D2O sing 132 n n 
CAK HAK D2O sing 133 n n 
CAL HAL D2O sing 134 n n 
CAM HAM D2O sing 135 n n 
CAN HAN D2O sing 136 n n 
CAN HANA D2O sing 137 n n 
CAO HAO D2O sing 138 n n 
CAO HAOA D2O sing 139 n n 
CAP HAP D2O sing 140 n n 
CAP HAPA D2O sing 141 n n 
#
_atom_sites.entry_id                     3NZC 
_atom_sites.fract_transf_matrix[1][1]    0.02713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002264 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 D2O X 1 207 1 D2O D2O . 
C 3 PO4 X 1 208 1 PO4 PO4 . 
D 4 GOL X 1 209 1 GOL GOL . 
E 4 GOL X 1 210 1 GOL GOL . 
F 5 HOH X 1 211 3 HOH HOH . 
F 5 HOH X 2 212 4 HOH HOH . 
F 5 HOH X 3 213 5 HOH HOH . 
F 5 HOH X 4 214 6 HOH HOH . 
F 5 HOH X 5 215 7 HOH HOH . 
F 5 HOH X 6 216 8 HOH HOH . 
F 5 HOH X 7 217 10 HOH HOH . 
F 5 HOH X 8 218 11 HOH HOH . 
F 5 HOH X 9 219 12 HOH HOH . 
F 5 HOH X 10 220 13 HOH HOH . 
F 5 HOH X 11 221 14 HOH HOH . 
F 5 HOH X 12 222 15 HOH HOH . 
F 5 HOH X 13 223 16 HOH HOH . 
F 5 HOH X 14 224 17 HOH HOH . 
F 5 HOH X 15 225 19 HOH HOH . 
F 5 HOH X 16 226 20 HOH HOH . 
F 5 HOH X 17 227 21 HOH HOH . 
F 5 HOH X 18 228 22 HOH HOH . 
F 5 HOH X 19 229 23 HOH HOH . 
F 5 HOH X 20 230 24 HOH HOH . 
F 5 HOH X 21 231 27 HOH HOH . 
F 5 HOH X 22 232 28 HOH HOH . 
F 5 HOH X 23 233 29 HOH HOH . 
F 5 HOH X 24 234 30 HOH HOH . 
F 5 HOH X 25 235 34 HOH HOH . 
F 5 HOH X 26 236 35 HOH HOH . 
F 5 HOH X 27 237 36 HOH HOH . 
F 5 HOH X 28 238 37 HOH HOH . 
F 5 HOH X 29 239 38 HOH HOH . 
F 5 HOH X 30 240 40 HOH HOH . 
F 5 HOH X 31 241 41 HOH HOH . 
F 5 HOH X 32 242 42 HOH HOH . 
F 5 HOH X 33 243 43 HOH HOH . 
F 5 HOH X 34 244 44 HOH HOH . 
F 5 HOH X 35 245 45 HOH HOH . 
F 5 HOH X 36 246 46 HOH HOH . 
F 5 HOH X 37 247 47 HOH HOH . 
F 5 HOH X 38 248 50 HOH HOH . 
F 5 HOH X 39 249 52 HOH HOH . 
F 5 HOH X 40 250 53 HOH HOH . 
F 5 HOH X 41 251 54 HOH HOH . 
F 5 HOH X 42 252 58 HOH HOH . 
F 5 HOH X 43 253 59 HOH HOH . 
F 5 HOH X 44 254 1 HOH HOH . 
F 5 HOH X 45 255 7 HOH HOH . 
F 5 HOH X 46 256 21 HOH HOH . 
F 5 HOH X 47 257 23 HOH HOH . 
F 5 HOH X 48 258 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 D2O . . . B 2 10.339 -1.85 13.066 0.5 20.79 ? N1 D2O 207 X 1 
HETATM 2 C C2 D2O . . . B 2 10.604 -2.674 12.059 0.5 17.78 ? C2 D2O 207 X 1 
HETATM 3 N N3 D2O . . . B 2 11.541 -2.362 11.199 0.5 23.43 ? N3 D2O 207 X 1 
HETATM 4 C C4 D2O . . . B 2 12.238 -1.248 11.316 0.5 24.76 ? C4 D2O 207 X 1 
HETATM 5 C C5 D2O . . . B 2 11.987 -0.366 12.35 0.5 21.56 ? C5 D2O 207 X 1 
HETATM 6 C C6 D2O . . . B 2 10.984 -0.714 13.248 0.5 19.19 ? C6 D2O 207 X 1 
HETATM 7 C CAA D2O . . . B 2 18.483 1.446 12.037 0.5 43.36 ? CAA D2O 207 X 1 
HETATM 8 C CAB D2O . . . B 2 12.648 1.896 13.409 0.5 14.42 ? CAB D2O 207 X 1 
HETATM 9 N NAC D2O . . . B 2 9.935 -3.8 11.891 0.5 17.45 ? NAC D2O 207 X 1 
HETATM 10 N NAD D2O . . . B 2 10.644 0.019 14.269 0.5 14.1 ? NAD D2O 207 X 1 
HETATM 11 C CAE D2O . . . B 2 15.938 1.757 2.184 0.5 45.18 ? CAE D2O 207 X 1 
HETATM 12 C CAF D2O . . . B 2 16.832 1.796 3.241 0.5 43.88 ? CAF D2O 207 X 1 
HETATM 13 C CAG D2O . . . B 2 14.867 2.641 2.107 0.5 45.33 ? CAG D2O 207 X 1 
HETATM 14 C CAH D2O . . . B 2 16.622 2.748 4.23 0.5 43.72 ? CAH D2O 207 X 1 
HETATM 15 C CAI D2O . . . B 2 14.672 3.579 3.097 0.5 44.91 ? CAI D2O 207 X 1 
HETATM 16 C CAJ D2O . . . B 2 17.643 2.643 8.576 0.5 42.41 ? CAJ D2O 207 X 1 
HETATM 17 C CAK D2O . . . B 2 17.914 2.195 9.85 0.5 42.1 ? CAK D2O 207 X 1 
HETATM 18 C CAL D2O . . . B 2 13.896 0.11 10.436 0.5 30.23 ? CAL D2O 207 X 1 
HETATM 19 C CAM D2O . . . B 2 15.334 2.919 9.134 0.5 41.54 ? CAM D2O 207 X 1 
HETATM 20 C CAN D2O . . . B 2 14.962 4.047 6.639 0.5 45.39 ? CAN D2O 207 X 1 
HETATM 21 C CAO D2O . . . B 2 15.325 4.679 5.29 0.5 44.24 ? CAO D2O 207 X 1 
HETATM 22 C CAP D2O . . . B 2 14.529 2.337 11.49 0.5 34.71 ? CAP D2O 207 X 1 
HETATM 23 N NAQ D2O . . . B 2 13.173 -0.994 10.408 0.5 29.24 ? NAQ D2O 207 X 1 
HETATM 24 O OAT D2O . . . B 2 17.107 1.674 12.015 0.5 44.67 ? OAT D2O 207 X 1 
HETATM 25 O OAU D2O . . . B 2 16.173 3.444 6.972 0.5 46.43 ? OAU D2O 207 X 1 
HETATM 26 C CAV D2O . . . B 2 15.548 3.636 4.167 0.5 44.33 ? CAV D2O 207 X 1 
HETATM 27 C CAW D2O . . . B 2 16.365 3.017 8.22 0.5 43.51 ? CAW D2O 207 X 1 
HETATM 28 C CAY D2O . . . B 2 13.712 1.057 11.431 0.5 27.25 ? CAY D2O 207 X 1 
HETATM 29 C CAZ D2O . . . B 2 15.611 2.443 10.423 0.5 39.93 ? CAZ D2O 207 X 1 
HETATM 30 C CBB D2O . . . B 2 12.756 0.81 12.384 0.5 22.59 ? CBB D2O 207 X 1 
HETATM 31 C CBC D2O . . . B 2 16.891 2.098 10.761 0.5 41.62 ? CBC D2O 207 X 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#