data_3NZC
#
_model_server_result.job_id            whmSgccg658e69Te3AJC2Q 
_model_server_result.datetime_utc      '2024-11-14 04:10:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3nzc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":209}' 
#
_entry.id    3NZC 
#
_exptl.entry_id    3NZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.77 
_cell.angle_gamma         90 
_cell.entry_id            3NZC 
_cell.length_a            36.859 
_cell.length_b            42.667 
_cell.length_c            59.936 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3NZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 188 n n 
C1 C2 GOL sing 189 n n 
C1 H11 GOL sing 190 n n 
C1 H12 GOL sing 191 n n 
O1 HO1 GOL sing 192 n n 
C2 O2 GOL sing 193 n n 
C2 C3 GOL sing 194 n n 
C2 H2 GOL sing 195 n n 
O2 HO2 GOL sing 196 n n 
C3 O3 GOL sing 197 n n 
C3 H31 GOL sing 198 n n 
C3 H32 GOL sing 199 n n 
O3 HO3 GOL sing 200 n n 
#
_atom_sites.entry_id                     3NZC 
_atom_sites.fract_transf_matrix[1][1]    0.02713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002264 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 D2O X 1 207 1 D2O D2O . 
C 3 PO4 X 1 208 1 PO4 PO4 . 
D 4 GOL X 1 209 1 GOL GOL . 
E 4 GOL X 1 210 1 GOL GOL . 
F 5 HOH X 1 211 3 HOH HOH . 
F 5 HOH X 2 212 4 HOH HOH . 
F 5 HOH X 3 213 5 HOH HOH . 
F 5 HOH X 4 214 6 HOH HOH . 
F 5 HOH X 5 215 7 HOH HOH . 
F 5 HOH X 6 216 8 HOH HOH . 
F 5 HOH X 7 217 10 HOH HOH . 
F 5 HOH X 8 218 11 HOH HOH . 
F 5 HOH X 9 219 12 HOH HOH . 
F 5 HOH X 10 220 13 HOH HOH . 
F 5 HOH X 11 221 14 HOH HOH . 
F 5 HOH X 12 222 15 HOH HOH . 
F 5 HOH X 13 223 16 HOH HOH . 
F 5 HOH X 14 224 17 HOH HOH . 
F 5 HOH X 15 225 19 HOH HOH . 
F 5 HOH X 16 226 20 HOH HOH . 
F 5 HOH X 17 227 21 HOH HOH . 
F 5 HOH X 18 228 22 HOH HOH . 
F 5 HOH X 19 229 23 HOH HOH . 
F 5 HOH X 20 230 24 HOH HOH . 
F 5 HOH X 21 231 27 HOH HOH . 
F 5 HOH X 22 232 28 HOH HOH . 
F 5 HOH X 23 233 29 HOH HOH . 
F 5 HOH X 24 234 30 HOH HOH . 
F 5 HOH X 25 235 34 HOH HOH . 
F 5 HOH X 26 236 35 HOH HOH . 
F 5 HOH X 27 237 36 HOH HOH . 
F 5 HOH X 28 238 37 HOH HOH . 
F 5 HOH X 29 239 38 HOH HOH . 
F 5 HOH X 30 240 40 HOH HOH . 
F 5 HOH X 31 241 41 HOH HOH . 
F 5 HOH X 32 242 42 HOH HOH . 
F 5 HOH X 33 243 43 HOH HOH . 
F 5 HOH X 34 244 44 HOH HOH . 
F 5 HOH X 35 245 45 HOH HOH . 
F 5 HOH X 36 246 46 HOH HOH . 
F 5 HOH X 37 247 47 HOH HOH . 
F 5 HOH X 38 248 50 HOH HOH . 
F 5 HOH X 39 249 52 HOH HOH . 
F 5 HOH X 40 250 53 HOH HOH . 
F 5 HOH X 41 251 54 HOH HOH . 
F 5 HOH X 42 252 58 HOH HOH . 
F 5 HOH X 43 253 59 HOH HOH . 
F 5 HOH X 44 254 1 HOH HOH . 
F 5 HOH X 45 255 7 HOH HOH . 
F 5 HOH X 46 256 21 HOH HOH . 
F 5 HOH X 47 257 23 HOH HOH . 
F 5 HOH X 48 258 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -2.995 -15.58 20.091 1 20 ? C1 GOL 209 X 1 
HETATM 2 O O1 GOL . . . D 4 -2.118 -16.138 19.203 1 20 ? O1 GOL 209 X 1 
HETATM 3 C C2 GOL . . . D 4 -2.756 -16.013 21.544 1 20 ? C2 GOL 209 X 1 
HETATM 4 O O2 GOL . . . D 4 -1.558 -15.622 22.002 1 20 ? O2 GOL 209 X 1 
HETATM 5 C C3 GOL . . . D 4 -2.975 -17.503 21.697 1 20 ? C3 GOL 209 X 1 
HETATM 6 O O3 GOL . . . D 4 -3.917 -17.751 22.671 1 20 ? O3 GOL 209 X 1 
HETATM 7 H H11 GOL . . . D 4 -2.924 -14.497 20.021 1 20 ? H11 GOL 209 X 1 
HETATM 8 H H12 GOL . . . D 4 -4.004 -15.86 19.791 1 20 ? H12 GOL 209 X 1 
HETATM 9 H HO1 GOL . . . D 4 -1.219 -16.093 19.57 1 20 ? HO1 GOL 209 X 1 
HETATM 10 H H2 GOL . . . D 4 -3.517 -15.519 22.145 1 20 ? H2 GOL 209 X 1 
HETATM 11 H HO2 GOL . . . D 4 -1.395 -16.001 22.883 1 20 ? HO2 GOL 209 X 1 
HETATM 12 H H31 GOL . . . D 4 -3.333 -17.9 20.746 1 20 ? H31 GOL 209 X 1 
HETATM 13 H H32 GOL . . . D 4 -2.037 -17.995 21.938 1 20 ? H32 GOL 209 X 1 
HETATM 14 H HO3 GOL . . . D 4 -4.056 -18.713 22.771 1 20 ? HO3 GOL 209 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           14 
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