data_3O00 # _model_server_result.job_id JeQvVhAX67duLSuyLs8dSA _model_server_result.datetime_utc '2024-11-27 00:53:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3O00 # _exptl.entry_id 3O00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.45 _cell.angle_gamma 90 _cell.entry_id 3O00 _cell.length_a 203.348 _cell.length_b 52.146 _cell.length_c 57.555 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NI NI . A NI 1 1_555 A N GLY 1 A GLY 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc2 C NI NI . A NI 1 1_555 A ND1 HIS 2 A HIS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 C NI NI . A NI 1 1_555 A N HIS 2 A HIS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 C NI NI . A NI 1 1_555 D O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 C NI NI . A NI 1 1_555 D O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O00 _atom_sites.fract_transf_matrix[1][1] 0.004918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000039 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 1 1 NI NI . D 3 HOH A 1 3 3 HOH HOH . D 3 HOH A 2 4 4 HOH HOH . D 3 HOH A 3 5 5 HOH HOH . D 3 HOH A 4 9 9 HOH HOH . D 3 HOH A 5 15 15 HOH HOH . D 3 HOH A 6 16 16 HOH HOH . D 3 HOH A 7 19 19 HOH HOH . D 3 HOH A 8 21 21 HOH HOH . D 3 HOH A 9 23 23 HOH HOH . D 3 HOH A 10 24 24 HOH HOH . D 3 HOH A 11 25 25 HOH HOH . D 3 HOH A 12 26 26 HOH HOH . D 3 HOH A 13 29 29 HOH HOH . D 3 HOH A 14 35 35 HOH HOH . D 3 HOH A 15 344 1 HOH HOH . D 3 HOH A 16 345 37 HOH HOH . D 3 HOH A 17 346 39 HOH HOH . D 3 HOH A 18 347 40 HOH HOH . D 3 HOH A 19 348 41 HOH HOH . D 3 HOH A 20 349 45 HOH HOH . D 3 HOH A 21 350 46 HOH HOH . D 3 HOH A 22 351 47 HOH HOH . D 3 HOH A 23 352 49 HOH HOH . D 3 HOH A 24 353 51 HOH HOH . D 3 HOH A 25 354 52 HOH HOH . D 3 HOH A 26 355 53 HOH HOH . D 3 HOH A 27 356 54 HOH HOH . D 3 HOH A 28 357 55 HOH HOH . D 3 HOH A 29 358 57 HOH HOH . D 3 HOH A 30 359 58 HOH HOH . D 3 HOH A 31 360 65 HOH HOH . D 3 HOH A 32 361 67 HOH HOH . D 3 HOH A 33 362 70 HOH HOH . D 3 HOH A 34 363 71 HOH HOH . D 3 HOH A 35 364 72 HOH HOH . D 3 HOH A 36 365 73 HOH HOH . D 3 HOH A 37 366 75 HOH HOH . D 3 HOH A 38 367 80 HOH HOH . D 3 HOH A 39 368 81 HOH HOH . D 3 HOH A 40 369 82 HOH HOH . D 3 HOH A 41 370 86 HOH HOH . D 3 HOH A 42 371 90 HOH HOH . D 3 HOH A 43 372 91 HOH HOH . D 3 HOH A 44 373 95 HOH HOH . D 3 HOH A 45 374 97 HOH HOH . D 3 HOH A 46 375 98 HOH HOH . D 3 HOH A 47 376 101 HOH HOH . D 3 HOH A 48 377 103 HOH HOH . D 3 HOH A 49 378 104 HOH HOH . D 3 HOH A 50 379 106 HOH HOH . D 3 HOH A 51 380 110 HOH HOH . D 3 HOH A 52 381 113 HOH HOH . D 3 HOH A 53 382 115 HOH HOH . D 3 HOH A 54 383 119 HOH HOH . D 3 HOH A 55 384 120 HOH HOH . D 3 HOH A 56 385 121 HOH HOH . D 3 HOH A 57 386 124 HOH HOH . D 3 HOH A 58 387 126 HOH HOH . D 3 HOH A 59 388 128 HOH HOH . D 3 HOH A 60 389 130 HOH HOH . D 3 HOH A 61 390 131 HOH HOH . D 3 HOH A 62 391 133 HOH HOH . D 3 HOH A 63 392 135 HOH HOH . D 3 HOH A 64 393 140 HOH HOH . D 3 HOH A 65 394 141 HOH HOH . D 3 HOH A 66 395 142 HOH HOH . D 3 HOH A 67 396 145 HOH HOH . D 3 HOH A 68 397 146 HOH HOH . D 3 HOH A 69 398 148 HOH HOH . D 3 HOH A 70 399 149 HOH HOH . D 3 HOH A 71 400 152 HOH HOH . D 3 HOH A 72 401 154 HOH HOH . D 3 HOH A 73 402 155 HOH HOH . D 3 HOH A 74 403 158 HOH HOH . D 3 HOH A 75 404 160 HOH HOH . D 3 HOH A 76 405 162 HOH HOH . D 3 HOH A 77 406 164 HOH HOH . D 3 HOH A 78 407 165 HOH HOH . D 3 HOH A 79 408 168 HOH HOH . D 3 HOH A 80 409 169 HOH HOH . D 3 HOH A 81 410 171 HOH HOH . D 3 HOH A 82 411 174 HOH HOH . D 3 HOH A 83 412 176 HOH HOH . D 3 HOH A 84 413 177 HOH HOH . D 3 HOH A 85 414 185 HOH HOH . D 3 HOH A 86 415 187 HOH HOH . D 3 HOH A 87 416 188 HOH HOH . D 3 HOH A 88 417 189 HOH HOH . D 3 HOH A 89 418 190 HOH HOH . D 3 HOH A 90 419 191 HOH HOH . D 3 HOH A 91 420 193 HOH HOH . D 3 HOH A 92 421 195 HOH HOH . D 3 HOH A 93 422 196 HOH HOH . D 3 HOH A 94 423 197 HOH HOH . D 3 HOH A 95 424 198 HOH HOH . D 3 HOH A 96 425 199 HOH HOH . D 3 HOH A 97 426 200 HOH HOH . D 3 HOH A 98 427 201 HOH HOH . D 3 HOH A 99 428 203 HOH HOH . D 3 HOH A 100 429 204 HOH HOH . D 3 HOH A 101 430 205 HOH HOH . D 3 HOH A 102 431 206 HOH HOH . D 3 HOH A 103 432 208 HOH HOH . D 3 HOH A 104 433 209 HOH HOH . D 3 HOH A 105 434 212 HOH HOH . D 3 HOH A 106 435 213 HOH HOH . D 3 HOH A 107 436 214 HOH HOH . D 3 HOH A 108 437 216 HOH HOH . D 3 HOH A 109 438 217 HOH HOH . D 3 HOH A 110 439 218 HOH HOH . D 3 HOH A 111 440 221 HOH HOH . D 3 HOH A 112 441 226 HOH HOH . D 3 HOH A 113 442 228 HOH HOH . D 3 HOH A 114 443 232 HOH HOH . D 3 HOH A 115 444 233 HOH HOH . D 3 HOH A 116 445 234 HOH HOH . D 3 HOH A 117 446 235 HOH HOH . D 3 HOH A 118 447 239 HOH HOH . D 3 HOH A 119 448 240 HOH HOH . D 3 HOH A 120 449 244 HOH HOH . D 3 HOH A 121 450 245 HOH HOH . D 3 HOH A 122 451 247 HOH HOH . D 3 HOH A 123 452 248 HOH HOH . D 3 HOH A 124 453 249 HOH HOH . D 3 HOH A 125 454 250 HOH HOH . D 3 HOH A 126 455 253 HOH HOH . D 3 HOH A 127 456 255 HOH HOH . D 3 HOH A 128 457 256 HOH HOH . D 3 HOH A 129 458 260 HOH HOH . D 3 HOH A 130 459 261 HOH HOH . D 3 HOH A 131 460 262 HOH HOH . D 3 HOH A 132 461 264 HOH HOH . D 3 HOH A 133 462 265 HOH HOH . D 3 HOH A 134 463 266 HOH HOH . D 3 HOH A 135 464 267 HOH HOH . D 3 HOH A 136 465 268 HOH HOH . D 3 HOH A 137 466 269 HOH HOH . D 3 HOH A 138 467 270 HOH HOH . D 3 HOH A 139 468 272 HOH HOH . D 3 HOH A 140 469 273 HOH HOH . D 3 HOH A 141 470 275 HOH HOH . D 3 HOH A 142 471 276 HOH HOH . D 3 HOH A 143 472 277 HOH HOH . D 3 HOH A 144 473 281 HOH HOH . D 3 HOH A 145 474 282 HOH HOH . D 3 HOH A 146 475 283 HOH HOH . D 3 HOH A 147 476 284 HOH HOH . D 3 HOH A 148 477 285 HOH HOH . D 3 HOH A 149 478 289 HOH HOH . D 3 HOH A 150 479 290 HOH HOH . D 3 HOH A 151 480 291 HOH HOH . D 3 HOH A 152 481 294 HOH HOH . D 3 HOH A 153 482 295 HOH HOH . D 3 HOH A 154 483 296 HOH HOH . D 3 HOH A 155 484 298 HOH HOH . E 3 HOH B 1 2 2 HOH HOH . E 3 HOH B 2 6 6 HOH HOH . E 3 HOH B 3 7 7 HOH HOH . E 3 HOH B 4 8 8 HOH HOH . E 3 HOH B 5 10 10 HOH HOH . E 3 HOH B 6 11 11 HOH HOH . E 3 HOH B 7 12 12 HOH HOH . E 3 HOH B 8 13 13 HOH HOH . E 3 HOH B 9 14 14 HOH HOH . E 3 HOH B 10 17 17 HOH HOH . E 3 HOH B 11 18 18 HOH HOH . E 3 HOH B 12 20 20 HOH HOH . E 3 HOH B 13 22 22 HOH HOH . E 3 HOH B 14 27 27 HOH HOH . E 3 HOH B 15 28 28 HOH HOH . E 3 HOH B 16 30 30 HOH HOH . E 3 HOH B 17 31 31 HOH HOH . E 3 HOH B 18 32 32 HOH HOH . E 3 HOH B 19 33 33 HOH HOH . E 3 HOH B 20 34 34 HOH HOH . E 3 HOH B 21 344 36 HOH HOH . E 3 HOH B 22 345 38 HOH HOH . E 3 HOH B 23 346 42 HOH HOH . E 3 HOH B 24 347 43 HOH HOH . E 3 HOH B 25 348 44 HOH HOH . E 3 HOH B 26 349 48 HOH HOH . E 3 HOH B 27 350 50 HOH HOH . E 3 HOH B 28 351 56 HOH HOH . E 3 HOH B 29 352 59 HOH HOH . E 3 HOH B 30 353 60 HOH HOH . E 3 HOH B 31 354 61 HOH HOH . E 3 HOH B 32 355 62 HOH HOH . E 3 HOH B 33 356 63 HOH HOH . E 3 HOH B 34 357 64 HOH HOH . E 3 HOH B 35 358 66 HOH HOH . E 3 HOH B 36 359 68 HOH HOH . E 3 HOH B 37 360 69 HOH HOH . E 3 HOH B 38 361 74 HOH HOH . E 3 HOH B 39 362 76 HOH HOH . E 3 HOH B 40 363 77 HOH HOH . E 3 HOH B 41 364 78 HOH HOH . E 3 HOH B 42 365 79 HOH HOH . E 3 HOH B 43 366 83 HOH HOH . E 3 HOH B 44 367 84 HOH HOH . E 3 HOH B 45 368 85 HOH HOH . E 3 HOH B 46 369 87 HOH HOH . E 3 HOH B 47 370 88 HOH HOH . E 3 HOH B 48 371 89 HOH HOH . E 3 HOH B 49 372 92 HOH HOH . E 3 HOH B 50 373 93 HOH HOH . E 3 HOH B 51 374 94 HOH HOH . E 3 HOH B 52 375 96 HOH HOH . E 3 HOH B 53 376 99 HOH HOH . E 3 HOH B 54 377 100 HOH HOH . E 3 HOH B 55 378 102 HOH HOH . E 3 HOH B 56 379 105 HOH HOH . E 3 HOH B 57 380 107 HOH HOH . E 3 HOH B 58 381 108 HOH HOH . E 3 HOH B 59 382 109 HOH HOH . E 3 HOH B 60 383 111 HOH HOH . E 3 HOH B 61 384 112 HOH HOH . E 3 HOH B 62 385 114 HOH HOH . E 3 HOH B 63 386 116 HOH HOH . E 3 HOH B 64 387 117 HOH HOH . E 3 HOH B 65 388 118 HOH HOH . E 3 HOH B 66 389 122 HOH HOH . E 3 HOH B 67 390 123 HOH HOH . E 3 HOH B 68 391 125 HOH HOH . E 3 HOH B 69 392 127 HOH HOH . E 3 HOH B 70 393 129 HOH HOH . E 3 HOH B 71 394 132 HOH HOH . E 3 HOH B 72 395 134 HOH HOH . E 3 HOH B 73 396 136 HOH HOH . E 3 HOH B 74 397 137 HOH HOH . E 3 HOH B 75 398 138 HOH HOH . E 3 HOH B 76 399 139 HOH HOH . E 3 HOH B 77 400 143 HOH HOH . E 3 HOH B 78 401 144 HOH HOH . E 3 HOH B 79 402 147 HOH HOH . E 3 HOH B 80 403 150 HOH HOH . E 3 HOH B 81 404 151 HOH HOH . E 3 HOH B 82 405 153 HOH HOH . E 3 HOH B 83 406 156 HOH HOH . E 3 HOH B 84 407 157 HOH HOH . E 3 HOH B 85 408 159 HOH HOH . E 3 HOH B 86 409 161 HOH HOH . E 3 HOH B 87 410 163 HOH HOH . E 3 HOH B 88 411 166 HOH HOH . E 3 HOH B 89 412 167 HOH HOH . E 3 HOH B 90 413 170 HOH HOH . E 3 HOH B 91 414 172 HOH HOH . E 3 HOH B 92 415 173 HOH HOH . E 3 HOH B 93 416 175 HOH HOH . E 3 HOH B 94 417 178 HOH HOH . E 3 HOH B 95 418 179 HOH HOH . E 3 HOH B 96 419 180 HOH HOH . E 3 HOH B 97 420 181 HOH HOH . E 3 HOH B 98 421 182 HOH HOH . E 3 HOH B 99 422 183 HOH HOH . E 3 HOH B 100 423 184 HOH HOH . E 3 HOH B 101 424 186 HOH HOH . E 3 HOH B 102 425 192 HOH HOH . E 3 HOH B 103 426 194 HOH HOH . E 3 HOH B 104 427 202 HOH HOH . E 3 HOH B 105 428 207 HOH HOH . E 3 HOH B 106 429 210 HOH HOH . E 3 HOH B 107 430 211 HOH HOH . E 3 HOH B 108 431 215 HOH HOH . E 3 HOH B 109 432 219 HOH HOH . E 3 HOH B 110 433 220 HOH HOH . E 3 HOH B 111 434 222 HOH HOH . E 3 HOH B 112 435 223 HOH HOH . E 3 HOH B 113 436 224 HOH HOH . E 3 HOH B 114 437 225 HOH HOH . E 3 HOH B 115 438 227 HOH HOH . E 3 HOH B 116 439 229 HOH HOH . E 3 HOH B 117 440 230 HOH HOH . E 3 HOH B 118 441 231 HOH HOH . E 3 HOH B 119 442 236 HOH HOH . E 3 HOH B 120 443 237 HOH HOH . E 3 HOH B 121 444 238 HOH HOH . E 3 HOH B 122 445 241 HOH HOH . E 3 HOH B 123 446 242 HOH HOH . E 3 HOH B 124 447 243 HOH HOH . E 3 HOH B 125 448 246 HOH HOH . E 3 HOH B 126 449 251 HOH HOH . E 3 HOH B 127 450 252 HOH HOH . E 3 HOH B 128 451 254 HOH HOH . E 3 HOH B 129 452 257 HOH HOH . E 3 HOH B 130 453 258 HOH HOH . E 3 HOH B 131 454 259 HOH HOH . E 3 HOH B 132 455 263 HOH HOH . E 3 HOH B 133 456 271 HOH HOH . E 3 HOH B 134 457 274 HOH HOH . E 3 HOH B 135 458 278 HOH HOH . E 3 HOH B 136 459 279 HOH HOH . E 3 HOH B 137 460 280 HOH HOH . E 3 HOH B 138 461 286 HOH HOH . E 3 HOH B 139 462 287 HOH HOH . E 3 HOH B 140 463 288 HOH HOH . E 3 HOH B 141 464 292 HOH HOH . E 3 HOH B 142 465 293 HOH HOH . E 3 HOH B 143 466 297 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.18 _atom_site.Cartn_y 23.671 _atom_site.Cartn_z -2.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #