data_3O03 # _model_server_result.job_id w29wOzwSZEwVeUWOgg52Mg _model_server_result.datetime_utc '2024-12-21 14:12:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":274}' # _entry.id 3O03 # _exptl.entry_id 3O03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.155 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'D-gluconic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O03 _cell.length_a 71.244 _cell.length_b 75.272 _cell.length_c 98.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3,4 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 75.272 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 75.272 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 170 A SER 150 1_555 B CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc2 A O PRO 213 A PRO 193 1_555 B CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc3 B CA CA . A CA 272 1_555 E O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'C6 H12 O7' _chem_comp.formula_weight 196.155 _chem_comp.id GCO _chem_comp.mon_nstd_flag . _chem_comp.name 'D-gluconic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'GLUCONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GCO sing 83 n n C1 O1A GCO doub 84 n n C1 O1B GCO sing 85 n n C2 C3 GCO sing 86 n n C2 O2 GCO sing 87 n n C2 H2 GCO sing 88 n n C3 C4 GCO sing 89 n n C3 O3 GCO sing 90 n n C3 H3 GCO sing 91 n n C4 C5 GCO sing 92 n n C4 O4 GCO sing 93 n n C4 H4 GCO sing 94 n n C5 C6 GCO sing 95 n n C5 O5 GCO sing 96 n n C5 H5 GCO sing 97 n n C6 O6 GCO sing 98 n n C6 H61 GCO sing 99 n n C6 H62 GCO sing 100 n n O1B HO1B GCO sing 101 n n O2 HO2 GCO sing 102 n n O3 HO3 GCO sing 103 n n O4 HO4 GCO sing 104 n n O5 HO5 GCO sing 105 n n O6 HO6 GCO sing 106 n n # _atom_sites.entry_id 3O03 _atom_sites.fract_transf_matrix[1][1] 0.014036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 272 272 CA CA . C 3 NAP A 1 273 273 NAP NAP . D 4 GCO A 1 274 274 GCO GKR . E 5 HOH A 1 275 275 HOH HOH . E 5 HOH A 2 276 276 HOH HOH . E 5 HOH A 3 277 277 HOH HOH . E 5 HOH A 4 278 278 HOH HOH . E 5 HOH A 5 279 279 HOH HOH . E 5 HOH A 6 280 280 HOH HOH . E 5 HOH A 7 281 281 HOH HOH . E 5 HOH A 8 282 282 HOH HOH . E 5 HOH A 9 283 283 HOH HOH . E 5 HOH A 10 284 284 HOH HOH . E 5 HOH A 11 285 285 HOH HOH . E 5 HOH A 12 286 286 HOH HOH . E 5 HOH A 13 287 287 HOH HOH . E 5 HOH A 14 288 288 HOH HOH . E 5 HOH A 15 289 289 HOH HOH . E 5 HOH A 16 290 290 HOH HOH . E 5 HOH A 17 291 291 HOH HOH . E 5 HOH A 18 292 292 HOH HOH . E 5 HOH A 19 293 293 HOH HOH . E 5 HOH A 20 294 294 HOH HOH . E 5 HOH A 21 295 295 HOH HOH . E 5 HOH A 22 296 296 HOH HOH . E 5 HOH A 23 297 297 HOH HOH . E 5 HOH A 24 298 298 HOH HOH . E 5 HOH A 25 299 299 HOH HOH . E 5 HOH A 26 300 300 HOH HOH . E 5 HOH A 27 301 301 HOH HOH . E 5 HOH A 28 302 302 HOH HOH . E 5 HOH A 29 303 303 HOH HOH . E 5 HOH A 30 304 304 HOH HOH . E 5 HOH A 31 305 305 HOH HOH . E 5 HOH A 32 306 306 HOH HOH . E 5 HOH A 33 307 307 HOH HOH . E 5 HOH A 34 308 308 HOH HOH . E 5 HOH A 35 309 309 HOH HOH . E 5 HOH A 36 310 310 HOH HOH . E 5 HOH A 37 311 311 HOH HOH . E 5 HOH A 38 312 312 HOH HOH . E 5 HOH A 39 313 313 HOH HOH . E 5 HOH A 40 314 314 HOH HOH . E 5 HOH A 41 315 315 HOH HOH . E 5 HOH A 42 316 316 HOH HOH . E 5 HOH A 43 317 317 HOH HOH . E 5 HOH A 44 318 318 HOH HOH . E 5 HOH A 45 319 319 HOH HOH . E 5 HOH A 46 320 320 HOH HOH . E 5 HOH A 47 321 321 HOH HOH . E 5 HOH A 48 322 322 HOH HOH . E 5 HOH A 49 323 323 HOH HOH . E 5 HOH A 50 324 324 HOH HOH . E 5 HOH A 51 325 325 HOH HOH . E 5 HOH A 52 326 326 HOH HOH . E 5 HOH A 53 327 327 HOH HOH . E 5 HOH A 54 328 328 HOH HOH . E 5 HOH A 55 329 329 HOH HOH . E 5 HOH A 56 330 330 HOH HOH . E 5 HOH A 57 331 331 HOH HOH . E 5 HOH A 58 332 332 HOH HOH . E 5 HOH A 59 333 333 HOH HOH . E 5 HOH A 60 334 334 HOH HOH . E 5 HOH A 61 335 335 HOH HOH . E 5 HOH A 62 336 336 HOH HOH . E 5 HOH A 63 337 337 HOH HOH . E 5 HOH A 64 338 338 HOH HOH . E 5 HOH A 65 339 339 HOH HOH . E 5 HOH A 66 340 340 HOH HOH . E 5 HOH A 67 341 341 HOH HOH . E 5 HOH A 68 342 342 HOH HOH . E 5 HOH A 69 343 343 HOH HOH . E 5 HOH A 70 344 344 HOH HOH . E 5 HOH A 71 345 345 HOH HOH . E 5 HOH A 72 346 346 HOH HOH . E 5 HOH A 73 347 347 HOH HOH . E 5 HOH A 74 348 348 HOH HOH . E 5 HOH A 75 349 349 HOH HOH . E 5 HOH A 76 350 350 HOH HOH . E 5 HOH A 77 351 351 HOH HOH . E 5 HOH A 78 352 352 HOH HOH . E 5 HOH A 79 353 353 HOH HOH . E 5 HOH A 80 354 354 HOH HOH . E 5 HOH A 81 355 355 HOH HOH . E 5 HOH A 82 356 356 HOH HOH . E 5 HOH A 83 357 357 HOH HOH . E 5 HOH A 84 358 358 HOH HOH . E 5 HOH A 85 359 359 HOH HOH . E 5 HOH A 86 360 360 HOH HOH . E 5 HOH A 87 361 361 HOH HOH . E 5 HOH A 88 362 362 HOH HOH . E 5 HOH A 89 363 363 HOH HOH . E 5 HOH A 90 364 364 HOH HOH . E 5 HOH A 91 365 365 HOH HOH . E 5 HOH A 92 366 366 HOH HOH . E 5 HOH A 93 367 367 HOH HOH . E 5 HOH A 94 368 368 HOH HOH . E 5 HOH A 95 369 369 HOH HOH . E 5 HOH A 96 370 370 HOH HOH . E 5 HOH A 97 371 371 HOH HOH . E 5 HOH A 98 372 372 HOH HOH . E 5 HOH A 99 373 373 HOH HOH . E 5 HOH A 100 374 374 HOH HOH . E 5 HOH A 101 375 375 HOH HOH . E 5 HOH A 102 376 376 HOH HOH . E 5 HOH A 103 377 377 HOH HOH . E 5 HOH A 104 378 378 HOH HOH . E 5 HOH A 105 379 379 HOH HOH . E 5 HOH A 106 380 380 HOH HOH . E 5 HOH A 107 381 381 HOH HOH . E 5 HOH A 108 382 382 HOH HOH . E 5 HOH A 109 383 383 HOH HOH . E 5 HOH A 110 384 384 HOH HOH . E 5 HOH A 111 385 385 HOH HOH . E 5 HOH A 112 386 386 HOH HOH . E 5 HOH A 113 387 387 HOH HOH . E 5 HOH A 114 388 388 HOH HOH . E 5 HOH A 115 389 389 HOH HOH . E 5 HOH A 116 390 390 HOH HOH . E 5 HOH A 117 391 391 HOH HOH . E 5 HOH A 118 392 392 HOH HOH . E 5 HOH A 119 393 393 HOH HOH . E 5 HOH A 120 394 394 HOH HOH . E 5 HOH A 121 395 395 HOH HOH . E 5 HOH A 122 396 396 HOH HOH . E 5 HOH A 123 397 397 HOH HOH . E 5 HOH A 124 398 398 HOH HOH . E 5 HOH A 125 399 399 HOH HOH . E 5 HOH A 126 400 400 HOH HOH . E 5 HOH A 127 401 401 HOH HOH . E 5 HOH A 128 402 402 HOH HOH . E 5 HOH A 129 403 403 HOH HOH . E 5 HOH A 130 404 404 HOH HOH . E 5 HOH A 131 405 405 HOH HOH . E 5 HOH A 132 406 406 HOH HOH . E 5 HOH A 133 407 407 HOH HOH . E 5 HOH A 134 408 408 HOH HOH . E 5 HOH A 135 409 409 HOH HOH . E 5 HOH A 136 410 410 HOH HOH . E 5 HOH A 137 411 411 HOH HOH . E 5 HOH A 138 412 412 HOH HOH . E 5 HOH A 139 413 413 HOH HOH . E 5 HOH A 140 414 414 HOH HOH . E 5 HOH A 141 415 415 HOH HOH . E 5 HOH A 142 416 416 HOH HOH . E 5 HOH A 143 417 417 HOH HOH . E 5 HOH A 144 418 418 HOH HOH . E 5 HOH A 145 419 419 HOH HOH . E 5 HOH A 146 420 420 HOH HOH . E 5 HOH A 147 421 421 HOH HOH . E 5 HOH A 148 422 422 HOH HOH . E 5 HOH A 149 423 423 HOH HOH . E 5 HOH A 150 424 424 HOH HOH . E 5 HOH A 151 425 425 HOH HOH . E 5 HOH A 152 426 426 HOH HOH . E 5 HOH A 153 427 427 HOH HOH . E 5 HOH A 154 428 428 HOH HOH . E 5 HOH A 155 429 429 HOH HOH . E 5 HOH A 156 430 430 HOH HOH . E 5 HOH A 157 431 431 HOH HOH . E 5 HOH A 158 432 432 HOH HOH . E 5 HOH A 159 433 433 HOH HOH . E 5 HOH A 160 434 434 HOH HOH . E 5 HOH A 161 435 435 HOH HOH . E 5 HOH A 162 436 436 HOH HOH . E 5 HOH A 163 437 437 HOH HOH . E 5 HOH A 164 438 438 HOH HOH . E 5 HOH A 165 439 439 HOH HOH . E 5 HOH A 166 440 440 HOH HOH . E 5 HOH A 167 441 441 HOH HOH . E 5 HOH A 168 442 442 HOH HOH . E 5 HOH A 169 443 443 HOH HOH . E 5 HOH A 170 444 444 HOH HOH . E 5 HOH A 171 445 445 HOH HOH . E 5 HOH A 172 446 446 HOH HOH . E 5 HOH A 173 447 447 HOH HOH . E 5 HOH A 174 448 448 HOH HOH . E 5 HOH A 175 449 449 HOH HOH . E 5 HOH A 176 450 450 HOH HOH . E 5 HOH A 177 451 451 HOH HOH . E 5 HOH A 178 452 452 HOH HOH . E 5 HOH A 179 453 453 HOH HOH . E 5 HOH A 180 454 454 HOH HOH . E 5 HOH A 181 455 455 HOH HOH . E 5 HOH A 182 456 456 HOH HOH . E 5 HOH A 183 457 457 HOH HOH . E 5 HOH A 184 458 458 HOH HOH . E 5 HOH A 185 459 459 HOH HOH . E 5 HOH A 186 460 460 HOH HOH . E 5 HOH A 187 461 461 HOH HOH . E 5 HOH A 188 462 462 HOH HOH . E 5 HOH A 189 463 463 HOH HOH . E 5 HOH A 190 464 464 HOH HOH . E 5 HOH A 191 465 465 HOH HOH . E 5 HOH A 192 466 466 HOH HOH . E 5 HOH A 193 467 467 HOH HOH . E 5 HOH A 194 468 468 HOH HOH . E 5 HOH A 195 469 469 HOH HOH . E 5 HOH A 196 470 470 HOH HOH . E 5 HOH A 197 471 471 HOH HOH . E 5 HOH A 198 472 472 HOH HOH . E 5 HOH A 199 473 473 HOH HOH . E 5 HOH A 200 474 474 HOH HOH . E 5 HOH A 201 475 475 HOH HOH . E 5 HOH A 202 476 476 HOH HOH . E 5 HOH A 203 477 477 HOH HOH . E 5 HOH A 204 478 478 HOH HOH . E 5 HOH A 205 479 479 HOH HOH . E 5 HOH A 206 480 480 HOH HOH . E 5 HOH A 207 481 481 HOH HOH . E 5 HOH A 208 482 482 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GCO . . . D 4 16.699 23.941 4.298 1 64.34 ? C1 GCO 274 A 1 HETATM 2 C C2 GCO . . . D 4 15.428 24.713 4.676 1 65.37 ? C2 GCO 274 A 1 HETATM 3 C C3 GCO . . . D 4 15.522 25.231 6.125 1 66.33 ? C3 GCO 274 A 1 HETATM 4 C C4 GCO . . . D 4 14.255 25.982 6.477 1 65.82 ? C4 GCO 274 A 1 HETATM 5 C C5 GCO . . . D 4 13.481 25.425 7.685 1 65.22 ? C5 GCO 274 A 1 HETATM 6 C C6 GCO . . . D 4 12.042 25.896 7.51 1 64.14 ? C6 GCO 274 A 1 HETATM 7 O O1A GCO . . . D 4 17.438 23.533 5.224 1 64.94 ? O1A GCO 274 A 1 HETATM 8 O O1B GCO . . . D 4 16.901 23.768 3.085 1 63.85 ? O1B GCO 274 A 1 HETATM 9 O O2 GCO . . . D 4 15.233 25.801 3.757 1 64.58 ? O2 GCO 274 A 1 HETATM 10 O O3 GCO . . . D 4 16.637 26.133 6.287 1 67.77 ? O3 GCO 274 A 1 HETATM 11 O O4 GCO . . . D 4 14.593 27.362 6.7 1 65.95 ? O4 GCO 274 A 1 HETATM 12 O O5 GCO . . . D 4 13.51 23.99 7.758 1 64.38 ? O5 GCO 274 A 1 HETATM 13 O O6 GCO . . . D 4 11.077 25.268 7.938 1 62.67 ? O6 GCO 274 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #