data_3O0F # _model_server_result.job_id 4pBksoyxz3c4WJdrSBzT4Q _model_server_result.datetime_utc '2024-10-19 23:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3O0F # _exptl.entry_id 3O0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O0F _cell.length_a 103.341 _cell.length_b 103.341 _cell.length_c 54.744 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 86 A HIS 85 1_555 A N MSE 87 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 87 A MSE 86 1_555 A N LEU 88 A LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C SER 101 A SER 100 1_555 A N MSE 102 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 102 A MSE 101 1_555 A N PHE 103 A PHE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ARG 116 A ARG 115 1_555 A N MSE 117 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 117 A MSE 116 1_555 A N VAL 118 A VAL 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 A C ALA 221 A ALA 220 1_555 A N MSE 222 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 222 A MSE 221 1_555 A N ILE 223 A ILE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A NE2 HIS 18 A HIS 17 1_555 E FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 E FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A OD2 ASP 25 A ASP 24 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 A OD1 ASP 25 A ASP 24 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 A NE2 HIS 50 A HIS 49 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 A OE2 GLU 75 A GLU 74 1_555 D FE FE . A FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 A OE1 GLU 75 A GLU 74 1_555 E FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc8 A ND1 HIS 86 A HIS 85 1_555 D FE FE . A FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 A NE2 HIS 203 A HIS 202 1_555 D FE FE . A FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 A OD1 ASP 261 A ASP 260 1_555 E FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc11 A NE2 HIS 263 A HIS 262 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc12 C ZN ZN . A ZN 302 1_555 F O3 PO4 . A PO4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? metalc ? metalc13 D FE FE . A FE 303 1_555 F O2 PO4 . A PO4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc14 D FE FE . A FE 303 1_555 I O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc15 E FE FE . A FE 304 1_555 F O4 PO4 . A PO4 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc16 E FE FE . A FE 304 1_555 I O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O0F _atom_sites.fract_transf_matrix[1][1] 0.009677 _atom_sites.fract_transf_matrix[1][2] 0.005587 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 ZN A 1 302 302 ZN ZN . D 4 FE A 1 303 303 FE FE . E 4 FE A 1 304 304 FE FE . F 5 PO4 A 1 305 305 PO4 PO4 . G 6 EDO A 1 306 306 EDO EDO . H 6 EDO A 1 307 307 EDO EDO . I 7 HOH A 1 308 308 HOH HOH . I 7 HOH A 2 309 309 HOH HOH . I 7 HOH A 3 310 310 HOH HOH . I 7 HOH A 4 311 311 HOH HOH . I 7 HOH A 5 312 312 HOH HOH . I 7 HOH A 6 313 313 HOH HOH . I 7 HOH A 7 314 314 HOH HOH . I 7 HOH A 8 315 315 HOH HOH . I 7 HOH A 9 316 316 HOH HOH . I 7 HOH A 10 317 317 HOH HOH . I 7 HOH A 11 318 318 HOH HOH . I 7 HOH A 12 319 319 HOH HOH . I 7 HOH A 13 320 320 HOH HOH . I 7 HOH A 14 321 321 HOH HOH . I 7 HOH A 15 322 322 HOH HOH . I 7 HOH A 16 323 323 HOH HOH . I 7 HOH A 17 324 324 HOH HOH . I 7 HOH A 18 325 325 HOH HOH . I 7 HOH A 19 326 326 HOH HOH . I 7 HOH A 20 327 327 HOH HOH . I 7 HOH A 21 328 328 HOH HOH . I 7 HOH A 22 329 329 HOH HOH . I 7 HOH A 23 330 330 HOH HOH . I 7 HOH A 24 331 331 HOH HOH . I 7 HOH A 25 332 332 HOH HOH . I 7 HOH A 26 333 333 HOH HOH . I 7 HOH A 27 334 334 HOH HOH . I 7 HOH A 28 335 335 HOH HOH . I 7 HOH A 29 336 336 HOH HOH . I 7 HOH A 30 337 337 HOH HOH . I 7 HOH A 31 338 338 HOH HOH . I 7 HOH A 32 339 339 HOH HOH . I 7 HOH A 33 340 340 HOH HOH . I 7 HOH A 34 341 341 HOH HOH . I 7 HOH A 35 342 342 HOH HOH . I 7 HOH A 36 343 343 HOH HOH . I 7 HOH A 37 344 344 HOH HOH . I 7 HOH A 38 345 345 HOH HOH . I 7 HOH A 39 346 346 HOH HOH . I 7 HOH A 40 347 347 HOH HOH . I 7 HOH A 41 348 348 HOH HOH . I 7 HOH A 42 349 349 HOH HOH . I 7 HOH A 43 350 350 HOH HOH . I 7 HOH A 44 351 351 HOH HOH . I 7 HOH A 45 352 352 HOH HOH . I 7 HOH A 46 353 353 HOH HOH . I 7 HOH A 47 354 354 HOH HOH . I 7 HOH A 48 355 355 HOH HOH . I 7 HOH A 49 356 356 HOH HOH . I 7 HOH A 50 357 357 HOH HOH . I 7 HOH A 51 358 358 HOH HOH . I 7 HOH A 52 359 359 HOH HOH . I 7 HOH A 53 360 360 HOH HOH . I 7 HOH A 54 361 361 HOH HOH . I 7 HOH A 55 362 362 HOH HOH . I 7 HOH A 56 363 363 HOH HOH . I 7 HOH A 57 364 364 HOH HOH . I 7 HOH A 58 365 365 HOH HOH . I 7 HOH A 59 366 366 HOH HOH . I 7 HOH A 60 367 367 HOH HOH . I 7 HOH A 61 368 368 HOH HOH . I 7 HOH A 62 369 369 HOH HOH . I 7 HOH A 63 370 370 HOH HOH . I 7 HOH A 64 371 371 HOH HOH . I 7 HOH A 65 372 372 HOH HOH . I 7 HOH A 66 373 373 HOH HOH . I 7 HOH A 67 374 374 HOH HOH . I 7 HOH A 68 375 375 HOH HOH . I 7 HOH A 69 376 376 HOH HOH . I 7 HOH A 70 377 377 HOH HOH . I 7 HOH A 71 378 378 HOH HOH . I 7 HOH A 72 379 379 HOH HOH . I 7 HOH A 73 380 380 HOH HOH . I 7 HOH A 74 381 381 HOH HOH . I 7 HOH A 75 382 382 HOH HOH . I 7 HOH A 76 383 383 HOH HOH . I 7 HOH A 77 384 384 HOH HOH . I 7 HOH A 78 385 385 HOH HOH . I 7 HOH A 79 386 386 HOH HOH . I 7 HOH A 80 387 387 HOH HOH . I 7 HOH A 81 388 388 HOH HOH . I 7 HOH A 82 389 389 HOH HOH . I 7 HOH A 83 390 390 HOH HOH . I 7 HOH A 84 391 391 HOH HOH . I 7 HOH A 85 392 392 HOH HOH . I 7 HOH A 86 393 393 HOH HOH . I 7 HOH A 87 394 394 HOH HOH . I 7 HOH A 88 395 395 HOH HOH . I 7 HOH A 89 396 396 HOH HOH . I 7 HOH A 90 397 397 HOH HOH . I 7 HOH A 91 398 398 HOH HOH . I 7 HOH A 92 399 399 HOH HOH . I 7 HOH A 93 400 400 HOH HOH . I 7 HOH A 94 401 401 HOH HOH . I 7 HOH A 95 402 402 HOH HOH . I 7 HOH A 96 403 403 HOH HOH . I 7 HOH A 97 404 404 HOH HOH . I 7 HOH A 98 405 405 HOH HOH . I 7 HOH A 99 406 406 HOH HOH . I 7 HOH A 100 407 407 HOH HOH . I 7 HOH A 101 408 408 HOH HOH . I 7 HOH A 102 409 409 HOH HOH . I 7 HOH A 103 410 410 HOH HOH . I 7 HOH A 104 411 411 HOH HOH . I 7 HOH A 105 412 412 HOH HOH . I 7 HOH A 106 413 413 HOH HOH . I 7 HOH A 107 414 414 HOH HOH . I 7 HOH A 108 415 415 HOH HOH . I 7 HOH A 109 416 416 HOH HOH . I 7 HOH A 110 417 417 HOH HOH . I 7 HOH A 111 418 418 HOH HOH . I 7 HOH A 112 419 419 HOH HOH . I 7 HOH A 113 420 420 HOH HOH . I 7 HOH A 114 421 421 HOH HOH . I 7 HOH A 115 422 422 HOH HOH . I 7 HOH A 116 423 423 HOH HOH . I 7 HOH A 117 424 424 HOH HOH . I 7 HOH A 118 425 425 HOH HOH . I 7 HOH A 119 426 426 HOH HOH . I 7 HOH A 120 427 427 HOH HOH . I 7 HOH A 121 428 428 HOH HOH . I 7 HOH A 122 429 429 HOH HOH . I 7 HOH A 123 430 430 HOH HOH . I 7 HOH A 124 431 431 HOH HOH . I 7 HOH A 125 432 432 HOH HOH . I 7 HOH A 126 433 433 HOH HOH . I 7 HOH A 127 434 434 HOH HOH . I 7 HOH A 128 435 435 HOH HOH . I 7 HOH A 129 436 436 HOH HOH . I 7 HOH A 130 437 437 HOH HOH . I 7 HOH A 131 438 438 HOH HOH . I 7 HOH A 132 439 439 HOH HOH . I 7 HOH A 133 440 440 HOH HOH . I 7 HOH A 134 441 441 HOH HOH . I 7 HOH A 135 442 442 HOH HOH . I 7 HOH A 136 443 443 HOH HOH . I 7 HOH A 137 444 444 HOH HOH . I 7 HOH A 138 445 445 HOH HOH . I 7 HOH A 139 446 446 HOH HOH . I 7 HOH A 140 447 447 HOH HOH . I 7 HOH A 141 448 448 HOH HOH . I 7 HOH A 142 449 449 HOH HOH . I 7 HOH A 143 450 450 HOH HOH . I 7 HOH A 144 451 451 HOH HOH . I 7 HOH A 145 452 452 HOH HOH . I 7 HOH A 146 453 453 HOH HOH . I 7 HOH A 147 454 454 HOH HOH . I 7 HOH A 148 455 455 HOH HOH . I 7 HOH A 149 456 456 HOH HOH . I 7 HOH A 150 457 457 HOH HOH . I 7 HOH A 151 458 458 HOH HOH . I 7 HOH A 152 459 459 HOH HOH . I 7 HOH A 153 460 460 HOH HOH . I 7 HOH A 154 461 461 HOH HOH . I 7 HOH A 155 462 462 HOH HOH . I 7 HOH A 156 463 463 HOH HOH . I 7 HOH A 157 464 464 HOH HOH . I 7 HOH A 158 465 465 HOH HOH . I 7 HOH A 159 466 466 HOH HOH . I 7 HOH A 160 467 467 HOH HOH . I 7 HOH A 161 468 468 HOH HOH . I 7 HOH A 162 469 469 HOH HOH . I 7 HOH A 163 470 470 HOH HOH . I 7 HOH A 164 471 471 HOH HOH . I 7 HOH A 165 472 472 HOH HOH . I 7 HOH A 166 473 473 HOH HOH . I 7 HOH A 167 474 474 HOH HOH . I 7 HOH A 168 475 475 HOH HOH . I 7 HOH A 169 476 476 HOH HOH . I 7 HOH A 170 477 477 HOH HOH . I 7 HOH A 171 478 478 HOH HOH . I 7 HOH A 172 479 479 HOH HOH . I 7 HOH A 173 480 480 HOH HOH . I 7 HOH A 174 481 481 HOH HOH . I 7 HOH A 175 482 482 HOH HOH . I 7 HOH A 176 483 483 HOH HOH . I 7 HOH A 177 484 484 HOH HOH . I 7 HOH A 178 485 485 HOH HOH . I 7 HOH A 179 486 486 HOH HOH . I 7 HOH A 180 487 487 HOH HOH . I 7 HOH A 181 488 488 HOH HOH . I 7 HOH A 182 489 489 HOH HOH . I 7 HOH A 183 490 490 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 20.533 25.514 3.402 1 24.64 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 21.088 26.475 4.389 1 19.33 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 20.044 24.282 4.118 1 21.47 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 19.521 26.111 2.422 1 24.68 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 21.772 25.021 2.508 1 23.07 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 22.417 25.921 1.641 1 30.01 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 23.887 25.792 1.9 1 33.63 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 24.46 24.608 1.281 1 33.11 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 24.638 27.003 1.357 1 34.8 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 25.055 27.808 2.452 1 30.94 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 25.83 26.288 0.744 1 41.02 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 26.934 26.947 0.123 1 45.31 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 25.865 24.852 1.247 1 27.5 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 26.611 23.943 0.357 1 31.89 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 27.42 22.968 0.778 1 29.98 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 27.945 22.308 -0.276 1 24.62 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 27.465 22.868 -1.398 1 25.1 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 27.621 22.656 -2.847 1 24 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 28.437 21.671 -3.345 1 27.19 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 26.91 23.463 -3.66 1 28.19 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 26.094 24.437 -3.22 1 24.76 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 25.914 24.688 -1.916 1 26.14 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 26.571 23.954 -0.977 1 31.79 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #