data_3O0J
#
_model_server_result.job_id            if0SjtU11TKV_BZ5cSIyeQ 
_model_server_result.datetime_utc      '2024-12-21 15:39:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":485}' 
#
_entry.id    3O0J 
#
_exptl.entry_id    3O0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              276.055 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(1-hydroxy-1,3-dihydro-2,1-benzoxaborol-5-yl)oxy]benzene-1,2-dicarbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3O0J 
_cell.length_a            53.611 
_cell.length_b            53.611 
_cell.length_c            229.014 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B ZN ZN . A ZN 1 1_555 S O HOH . A HOH 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A NE2 HIS 77 A HIS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 B ZN ZN . A ZN 1 1_555 A NE2 HIS 113 A HIS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc4 B ZN ZN . A ZN 1 1_555 A OD2 ASP 114 A ASP 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc5 B ZN ZN . A ZN 1 1_555 A OD1 ASP 231 A ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc6 B ZN ZN . A ZN 1 1_555 D O17 3OJ . A 3OJ 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc7 C MG MG . A MG 2 1_555 S O HOH . A HOH 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc8 C MG MG . A MG 2 1_555 S O HOH . A HOH 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc9 C MG MG . A MG 2 1_555 A OD1 ASP 114 A ASP 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc10 C MG MG . A MG 2 1_555 D O15 3OJ . A 3OJ 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc11 C MG MG . A MG 2 1_555 S O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
metalc ? metalc12 C MG MG . A MG 2 1_555 S O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
#
_chem_comp.formula           'C15 H9 B N2 O3' 
_chem_comp.formula_weight    276.055 
_chem_comp.id                3OJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(1-hydroxy-1,3-dihydro-2,1-benzoxaborol-5-yl)oxy]benzene-1,2-dicarbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C1 3OJ doub 1 n y 
C1 C2 3OJ sing 2 n y 
C1 H1 3OJ sing 3 n n 
C2 C4 3OJ doub 4 n y 
C2 O7 3OJ sing 5 n n 
C3 C5 3OJ sing 6 n y 
C3 H3 3OJ sing 7 n n 
C6 C4 3OJ sing 8 n y 
C4 H4 3OJ sing 9 n n 
C18 C5 3OJ sing 10 n n 
C5 C6 3OJ doub 11 n y 
C6 C19 3OJ sing 12 n n 
O7 C13 3OJ sing 13 n n 
C9 C8 3OJ doub 14 n y 
C8 C10 3OJ sing 15 n y 
C8 B16 3OJ sing 16 n n 
C11 C9 3OJ sing 17 n y 
C9 C14 3OJ sing 18 n n 
C12 C10 3OJ doub 19 n y 
C10 H10 3OJ sing 20 n n 
C11 C13 3OJ doub 21 n y 
C11 H11 3OJ sing 22 n n 
C13 C12 3OJ sing 23 n y 
C12 H12 3OJ sing 24 n n 
C14 O15 3OJ sing 25 n n 
C14 H14 3OJ sing 26 n n 
C14 H14A 3OJ sing 27 n n 
O15 B16 3OJ sing 28 n n 
B16 O17 3OJ sing 29 n n 
O17 HO17 3OJ sing 30 n n 
N20 C18 3OJ trip 31 n n 
C19 N21 3OJ trip 32 n n 
#
_atom_sites.entry_id                     3O0J 
_atom_sites.fract_transf_matrix[1][1]    0.018653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018653 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004367 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1 1 ZN ZN . 
C 3 MG A 1 2 2 MG MG . 
D 4 3OJ A 1 485 485 3OJ 3OJ . 
E 5 EDO A 1 486 486 EDO EDO . 
F 5 EDO A 1 487 487 EDO EDO . 
G 5 EDO A 1 5 5 EDO EDO . 
H 5 EDO A 1 6 6 EDO EDO . 
I 5 EDO A 1 7 7 EDO EDO . 
J 5 EDO A 1 8 8 EDO EDO . 
K 5 EDO A 1 9 9 EDO EDO . 
L 5 EDO A 1 11 11 EDO EDO . 
M 5 EDO A 1 12 12 EDO EDO . 
N 5 EDO A 1 14 14 EDO EDO . 
O 5 EDO A 1 16 16 EDO EDO . 
P 5 EDO A 1 17 17 EDO EDO . 
Q 5 EDO A 1 18 18 EDO EDO . 
R 5 EDO A 1 19 19 EDO EDO . 
S 6 HOH A 1 3 3 HOH HOH . 
S 6 HOH A 2 4 4 HOH HOH . 
S 6 HOH A 3 10 10 HOH HOH . 
S 6 HOH A 4 13 13 HOH HOH . 
S 6 HOH A 5 15 15 HOH HOH . 
S 6 HOH A 6 20 20 HOH HOH . 
S 6 HOH A 7 21 21 HOH HOH . 
S 6 HOH A 8 22 22 HOH HOH . 
S 6 HOH A 9 23 23 HOH HOH . 
S 6 HOH A 10 24 24 HOH HOH . 
S 6 HOH A 11 25 25 HOH HOH . 
S 6 HOH A 12 26 26 HOH HOH . 
S 6 HOH A 13 27 27 HOH HOH . 
S 6 HOH A 14 28 28 HOH HOH . 
S 6 HOH A 15 29 29 HOH HOH . 
S 6 HOH A 16 30 30 HOH HOH . 
S 6 HOH A 17 31 31 HOH HOH . 
S 6 HOH A 18 32 32 HOH HOH . 
S 6 HOH A 19 33 33 HOH HOH . 
S 6 HOH A 20 34 34 HOH HOH . 
S 6 HOH A 21 35 35 HOH HOH . 
S 6 HOH A 22 36 36 HOH HOH . 
S 6 HOH A 23 37 37 HOH HOH . 
S 6 HOH A 24 38 38 HOH HOH . 
S 6 HOH A 25 39 39 HOH HOH . 
S 6 HOH A 26 40 40 HOH HOH . 
S 6 HOH A 27 41 41 HOH HOH . 
S 6 HOH A 28 42 42 HOH HOH . 
S 6 HOH A 29 43 43 HOH HOH . 
S 6 HOH A 30 44 44 HOH HOH . 
S 6 HOH A 31 45 45 HOH HOH . 
S 6 HOH A 32 46 46 HOH HOH . 
S 6 HOH A 33 47 47 HOH HOH . 
S 6 HOH A 34 48 48 HOH HOH . 
S 6 HOH A 35 49 49 HOH HOH . 
S 6 HOH A 36 50 50 HOH HOH . 
S 6 HOH A 37 51 51 HOH HOH . 
S 6 HOH A 38 52 52 HOH HOH . 
S 6 HOH A 39 53 53 HOH HOH . 
S 6 HOH A 40 54 54 HOH HOH . 
S 6 HOH A 41 55 55 HOH HOH . 
S 6 HOH A 42 56 56 HOH HOH . 
S 6 HOH A 43 57 57 HOH HOH . 
S 6 HOH A 44 58 58 HOH HOH . 
S 6 HOH A 45 59 59 HOH HOH . 
S 6 HOH A 46 60 60 HOH HOH . 
S 6 HOH A 47 61 61 HOH HOH . 
S 6 HOH A 48 62 62 HOH HOH . 
S 6 HOH A 49 63 63 HOH HOH . 
S 6 HOH A 50 64 64 HOH HOH . 
S 6 HOH A 51 65 65 HOH HOH . 
S 6 HOH A 52 66 66 HOH HOH . 
S 6 HOH A 53 67 67 HOH HOH . 
S 6 HOH A 54 68 68 HOH HOH . 
S 6 HOH A 55 69 69 HOH HOH . 
S 6 HOH A 56 70 70 HOH HOH . 
S 6 HOH A 57 71 71 HOH HOH . 
S 6 HOH A 58 72 72 HOH HOH . 
S 6 HOH A 59 73 73 HOH HOH . 
S 6 HOH A 60 74 74 HOH HOH . 
S 6 HOH A 61 75 75 HOH HOH . 
S 6 HOH A 62 76 76 HOH HOH . 
S 6 HOH A 63 77 77 HOH HOH . 
S 6 HOH A 64 78 78 HOH HOH . 
S 6 HOH A 65 79 79 HOH HOH . 
S 6 HOH A 66 80 80 HOH HOH . 
S 6 HOH A 67 81 81 HOH HOH . 
S 6 HOH A 68 82 82 HOH HOH . 
S 6 HOH A 69 83 83 HOH HOH . 
S 6 HOH A 70 84 84 HOH HOH . 
S 6 HOH A 71 85 85 HOH HOH . 
S 6 HOH A 72 86 86 HOH HOH . 
S 6 HOH A 73 87 87 HOH HOH . 
S 6 HOH A 74 88 88 HOH HOH . 
S 6 HOH A 75 89 89 HOH HOH . 
S 6 HOH A 76 90 90 HOH HOH . 
S 6 HOH A 77 91 91 HOH HOH . 
S 6 HOH A 78 92 92 HOH HOH . 
S 6 HOH A 79 93 93 HOH HOH . 
S 6 HOH A 80 94 94 HOH HOH . 
S 6 HOH A 81 95 95 HOH HOH . 
S 6 HOH A 82 96 96 HOH HOH . 
S 6 HOH A 83 97 97 HOH HOH . 
S 6 HOH A 84 98 98 HOH HOH . 
S 6 HOH A 85 99 99 HOH HOH . 
S 6 HOH A 86 100 100 HOH HOH . 
S 6 HOH A 87 101 101 HOH HOH . 
S 6 HOH A 88 102 102 HOH HOH . 
S 6 HOH A 89 103 103 HOH HOH . 
S 6 HOH A 90 104 104 HOH HOH . 
S 6 HOH A 91 105 105 HOH HOH . 
S 6 HOH A 92 106 106 HOH HOH . 
S 6 HOH A 93 107 107 HOH HOH . 
S 6 HOH A 94 108 108 HOH HOH . 
S 6 HOH A 95 109 109 HOH HOH . 
S 6 HOH A 96 110 110 HOH HOH . 
S 6 HOH A 97 111 111 HOH HOH . 
S 6 HOH A 98 112 112 HOH HOH . 
S 6 HOH A 99 113 113 HOH HOH . 
S 6 HOH A 100 114 114 HOH HOH . 
S 6 HOH A 101 115 115 HOH HOH . 
S 6 HOH A 102 116 116 HOH HOH . 
S 6 HOH A 103 117 117 HOH HOH . 
S 6 HOH A 104 118 118 HOH HOH . 
S 6 HOH A 105 119 119 HOH HOH . 
S 6 HOH A 106 120 120 HOH HOH . 
S 6 HOH A 107 121 121 HOH HOH . 
S 6 HOH A 108 122 122 HOH HOH . 
S 6 HOH A 109 123 123 HOH HOH . 
S 6 HOH A 110 124 124 HOH HOH . 
S 6 HOH A 111 125 125 HOH HOH . 
S 6 HOH A 112 126 126 HOH HOH . 
S 6 HOH A 113 127 127 HOH HOH . 
S 6 HOH A 114 128 128 HOH HOH . 
S 6 HOH A 115 129 129 HOH HOH . 
S 6 HOH A 116 130 130 HOH HOH . 
S 6 HOH A 117 131 131 HOH HOH . 
S 6 HOH A 118 132 132 HOH HOH . 
S 6 HOH A 119 133 133 HOH HOH . 
S 6 HOH A 120 134 134 HOH HOH . 
S 6 HOH A 121 488 488 HOH HOH . 
S 6 HOH A 122 489 489 HOH HOH . 
S 6 HOH A 123 490 490 HOH HOH . 
S 6 HOH A 124 491 491 HOH HOH . 
S 6 HOH A 125 492 492 HOH HOH . 
S 6 HOH A 126 493 493 HOH HOH . 
S 6 HOH A 127 494 494 HOH HOH . 
S 6 HOH A 128 495 495 HOH HOH . 
S 6 HOH A 129 496 496 HOH HOH . 
S 6 HOH A 130 497 497 HOH HOH . 
S 6 HOH A 131 498 498 HOH HOH . 
S 6 HOH A 132 499 499 HOH HOH . 
S 6 HOH A 133 500 500 HOH HOH . 
S 6 HOH A 134 501 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3OJ . . . D 4 -43.703 94.853 111.8 1 53.24 ? C1 3OJ 485 A 1 
HETATM 2 C C2 3OJ . . . D 4 -43.956 94.165 112.985 1 50.19 ? C2 3OJ 485 A 1 
HETATM 3 C C3 3OJ . . . D 4 -42.492 94.706 111.138 1 50.73 ? C3 3OJ 485 A 1 
HETATM 4 C C4 3OJ . . . D 4 -42.978 93.321 113.505 1 49.03 ? C4 3OJ 485 A 1 
HETATM 5 C C5 3OJ . . . D 4 -41.532 93.866 111.661 1 50.34 ? C5 3OJ 485 A 1 
HETATM 6 C C6 3OJ . . . D 4 -41.775 93.169 112.834 1 51.16 ? C6 3OJ 485 A 1 
HETATM 7 O O7 3OJ . . . D 4 -45.17 94.346 113.609 1 50.98 ? O7 3OJ 485 A 1 
HETATM 8 C C8 3OJ . . . D 4 -46.698 92.273 116.817 1 47.98 ? C8 3OJ 485 A 1 
HETATM 9 C C9 3OJ . . . D 4 -47.128 91.97 115.568 1 44.47 ? C9 3OJ 485 A 1 
HETATM 10 C C10 3OJ . . . D 4 -45.763 93.271 117.031 1 47.2 ? C10 3OJ 485 A 1 
HETATM 11 C C11 3OJ . . . D 4 -46.646 92.644 114.459 1 49.52 ? C11 3OJ 485 A 1 
HETATM 12 C C12 3OJ . . . D 4 -45.263 93.961 115.937 1 46.11 ? C12 3OJ 485 A 1 
HETATM 13 C C13 3OJ . . . D 4 -45.701 93.651 114.656 1 48.89 ? C13 3OJ 485 A 1 
HETATM 14 C C14 3OJ . . . D 4 -48.136 90.868 115.624 1 45.42 ? C14 3OJ 485 A 1 
HETATM 15 O O15 3OJ . . . D 4 -48.351 90.678 117.047 1 32.14 ? O15 3OJ 485 A 1 
HETATM 16 B B16 3OJ . . . D 4 -47.362 91.397 117.823 1 44.81 ? B16 3OJ 485 A 1 
HETATM 17 O O17 3OJ . . . D 4 -46.393 90.516 118.407 1 26.47 ? O17 3OJ 485 A 1 
HETATM 18 C C18 3OJ . . . D 4 -40.284 93.696 110.993 1 51.14 ? C18 3OJ 485 A 1 
HETATM 19 C C19 3OJ . . . D 4 -40.747 92.317 113.346 1 52.07 ? C19 3OJ 485 A 1 
HETATM 20 N N20 3OJ . . . D 4 -39.267 93.564 110.47 1 53.7 ? N20 3OJ 485 A 1 
HETATM 21 N N21 3OJ . . . D 4 -39.91 91.62 113.733 1 52.46 ? N21 3OJ 485 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#