data_3O1D # _model_server_result.job_id USiykKnA0-ToKbh_bDCVzw _model_server_result.datetime_utc '2024-12-16 16:58:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3O1D # _exptl.entry_id 3O1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.669 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-[(1S)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O1D _cell.length_a 66.108 _cell.length_b 66.108 _cell.length_c 264.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 33.054 57.251207 44.106667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H44 F6 O4' _chem_comp.formula_weight 594.669 _chem_comp.id G72 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-[(1S)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,25-dihydroxy-20S-21(3-trideuteromethyl-3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27-hexafluoro-19-nor-cholecalciferol;Gemini-0072 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 G72 sing 83 n n C10 C1 G72 sing 84 n n O1 C1 G72 sing 85 n n C1 H1 G72 sing 86 n n C26 F1 G72 sing 87 n n O1 HO1 G72 sing 88 n n C2 C3 G72 sing 89 n n C2 H2 G72 sing 90 n n C2 H2A G72 sing 91 n n F2 C26 G72 sing 92 n n C3 O2 G72 sing 93 n n O2 HO2 G72 sing 94 n n C4 C3 G72 sing 95 n n C3 H3 G72 sing 96 n n F3 C26 G72 sing 97 n n C24 O3 G72 sing 98 n n O3 HO3 G72 sing 99 n n C4 C5 G72 sing 100 n n C4 H4 G72 sing 101 n n C4 H4A G72 sing 102 n n F4 C25 G72 sing 103 n n O4 C30 G72 sing 104 n n O4 HO4 G72 sing 105 n n C10 C5 G72 sing 106 n n C5 C6 G72 doub 107 n n F5 C25 G72 sing 108 e n C6 C7 G72 sing 109 n n C6 H6 G72 sing 110 n n C25 F6 G72 sing 111 n n C8 C7 G72 doub 112 n n C7 H7 G72 sing 113 n n C9 C8 G72 sing 114 n n C8 C14 G72 sing 115 n n C11 C9 G72 sing 116 n n C9 H9 G72 sing 117 n n C9 H9A G72 sing 118 n n C10 H10 G72 sing 119 n n C10 H10A G72 sing 120 n n C11 C12 G72 sing 121 n n C11 H11 G72 sing 122 n n C11 H11A G72 sing 123 n n C12 C13 G72 sing 124 n n C12 H12 G72 sing 125 n n C12 H12A G72 sing 126 n n C18 C13 G72 sing 127 n n C13 C17 G72 sing 128 n n C13 C14 G72 sing 129 n n C14 C15 G72 sing 130 n n C14 H14 G72 sing 131 n n C16 C15 G72 sing 132 n n C15 H15 G72 sing 133 n n C15 H15A G72 sing 134 n n C17 C16 G72 sing 135 n n C16 H16 G72 sing 136 n n C16 H16A G72 sing 137 n n C20 C17 G72 sing 138 n n C17 H17 G72 sing 139 n n C18 H18 G72 sing 140 n n C18 H18A G72 sing 141 n n C18 H18B G72 sing 142 n n C21 C20 G72 sing 143 n n C20 C27 G72 sing 144 n n C20 H20 G72 sing 145 n n C22 C21 G72 sing 146 n n C21 H21 G72 sing 147 n n C21 H21A G72 sing 148 n n C23 C22 G72 trip 149 n n C24 C23 G72 sing 150 n n C25 C24 G72 sing 151 n n C26 C24 G72 sing 152 n n C27 C28 G72 sing 153 n n C27 H27 G72 sing 154 n n C27 H27A G72 sing 155 n n C28 C29 G72 sing 156 n n C28 H28 G72 sing 157 n n C28 H28A G72 sing 158 n n C29 C30 G72 sing 159 n n C29 H29 G72 sing 160 n n C29 H29A G72 sing 161 n n C30 C32 G72 sing 162 n n C30 C31 G72 sing 163 n n C31 H31 G72 sing 164 n n C31 H31A G72 sing 165 n n C31 H31B G72 sing 166 n n C32 H32 G72 sing 167 n n C32 H32A G72 sing 168 n n C32 H32B G72 sing 169 n n # _atom_sites.entry_id 3O1D _atom_sites.fract_transf_matrix[1][1] 0.015127 _atom_sites.fract_transf_matrix[1][2] 0.008733 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 G72 A 1 1 1 G72 G72 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 30 30 HOH HOH . D 4 HOH A 28 31 31 HOH HOH . D 4 HOH A 29 32 32 HOH HOH . D 4 HOH A 30 33 33 HOH HOH . D 4 HOH A 31 35 35 HOH HOH . D 4 HOH A 32 37 37 HOH HOH . D 4 HOH A 33 38 38 HOH HOH . D 4 HOH A 34 40 40 HOH HOH . D 4 HOH A 35 41 41 HOH HOH . D 4 HOH A 36 42 42 HOH HOH . D 4 HOH A 37 43 43 HOH HOH . D 4 HOH A 38 45 45 HOH HOH . D 4 HOH A 39 48 48 HOH HOH . D 4 HOH A 40 49 49 HOH HOH . D 4 HOH A 41 51 51 HOH HOH . D 4 HOH A 42 52 52 HOH HOH . D 4 HOH A 43 54 54 HOH HOH . D 4 HOH A 44 57 57 HOH HOH . D 4 HOH A 45 58 58 HOH HOH . D 4 HOH A 46 60 60 HOH HOH . D 4 HOH A 47 61 61 HOH HOH . D 4 HOH A 48 63 63 HOH HOH . D 4 HOH A 49 64 64 HOH HOH . D 4 HOH A 50 65 65 HOH HOH . D 4 HOH A 51 68 68 HOH HOH . D 4 HOH A 52 69 69 HOH HOH . D 4 HOH A 53 70 70 HOH HOH . D 4 HOH A 54 71 71 HOH HOH . D 4 HOH A 55 72 72 HOH HOH . D 4 HOH A 56 75 75 HOH HOH . D 4 HOH A 57 78 78 HOH HOH . D 4 HOH A 58 80 80 HOH HOH . D 4 HOH A 59 81 81 HOH HOH . D 4 HOH A 60 84 84 HOH HOH . D 4 HOH A 61 454 1 HOH HOH . E 4 HOH B 1 21 21 HOH HOH . E 4 HOH B 2 56 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G72 . . . C 3 2.872 39.364 38.876 1 40.43 ? C1 G72 1 A 1 HETATM 2 F F1 G72 . . . C 3 6.6 29.611 34.311 1 49.29 ? F1 G72 1 A 1 HETATM 3 O O1 G72 . . . C 3 4.239 39.453 38.463 1 38.7 ? O1 G72 1 A 1 HETATM 4 C C2 G72 . . . C 3 2.1 40.527 38.265 1 41.4 ? C2 G72 1 A 1 HETATM 5 F F2 G72 . . . C 3 5.371 30.421 32.727 1 52.11 ? F2 G72 1 A 1 HETATM 6 O O2 G72 . . . C 3 0.537 40.488 40.106 1 42.99 ? O2 G72 1 A 1 HETATM 7 C C3 G72 . . . C 3 0.634 40.475 38.676 1 44.65 ? C3 G72 1 A 1 HETATM 8 F F3 G72 . . . C 3 6.682 28.766 32.346 1 55.9 ? F3 G72 1 A 1 HETATM 9 O O3 G72 . . . C 3 5.352 27.108 34.117 1 51.68 ? O3 G72 1 A 1 HETATM 10 C C4 G72 . . . C 3 -0.007 39.208 38.111 1 44.04 ? C4 G72 1 A 1 HETATM 11 F F4 G72 . . . C 3 3.242 29.042 32.02 1 52.78 ? F4 G72 1 A 1 HETATM 12 O O4 G72 . . . C 3 2.741 25.009 39.903 1 61.71 ? O4 G72 1 A 1 HETATM 13 C C5 G72 . . . C 3 0.813 37.991 38.479 1 41.38 ? C5 G72 1 A 1 HETATM 14 F F5 G72 . . . C 3 4.746 27.649 31.38 1 44.47 ? F5 G72 1 A 1 HETATM 15 C C6 G72 . . . C 3 0.187 36.863 38.854 1 40.8 ? C6 G72 1 A 1 HETATM 16 F F6 G72 . . . C 3 3.145 26.977 32.651 1 49.74 ? F6 G72 1 A 1 HETATM 17 C C7 G72 . . . C 3 0.883 35.632 39.245 1 41 ? C7 G72 1 A 1 HETATM 18 C C8 G72 . . . C 3 0.308 34.435 39.027 1 40.3 ? C8 G72 1 A 1 HETATM 19 C C9 G72 . . . C 3 -1.029 34.334 38.338 1 41.74 ? C9 G72 1 A 1 HETATM 20 C C10 G72 . . . C 3 2.319 38.032 38.384 1 38.24 ? C10 G72 1 A 1 HETATM 21 C C11 G72 . . . C 3 -0.946 33.284 37.22 1 41.71 ? C11 G72 1 A 1 HETATM 22 C C12 G72 . . . C 3 -0.197 31.993 37.592 1 40.99 ? C12 G72 1 A 1 HETATM 23 C C13 G72 . . . C 3 1.18 32.304 38.168 1 40.79 ? C13 G72 1 A 1 HETATM 24 C C14 G72 . . . C 3 0.916 33.118 39.413 1 40.39 ? C14 G72 1 A 1 HETATM 25 C C15 G72 . . . C 3 2.228 33.12 40.179 1 39.76 ? C15 G72 1 A 1 HETATM 26 C C16 G72 . . . C 3 2.839 31.757 39.839 1 42.05 ? C16 G72 1 A 1 HETATM 27 C C17 G72 . . . C 3 2.017 31.141 38.702 1 45.2 ? C17 G72 1 A 1 HETATM 28 C C18 G72 . . . C 3 2.02 33.133 37.204 1 34.18 ? C18 G72 1 A 1 HETATM 29 C C20 G72 . . . C 3 2.952 30.419 37.726 1 46.24 ? C20 G72 1 A 1 HETATM 30 C C21 G72 . . . C 3 2.231 29.838 36.51 1 46.13 ? C21 G72 1 A 1 HETATM 31 C C22 G72 . . . C 3 3.172 29.303 35.499 1 47.34 ? C22 G72 1 A 1 HETATM 32 C C23 G72 . . . C 3 3.886 28.866 34.656 1 49.68 ? C23 G72 1 A 1 HETATM 33 C C24 G72 . . . C 3 4.773 28.324 33.609 1 51.44 ? C24 G72 1 A 1 HETATM 34 C C25 G72 . . . C 3 3.952 27.986 32.379 1 50.35 ? C25 G72 1 A 1 HETATM 35 C C26 G72 . . . C 3 5.882 29.312 33.243 1 52.63 ? C26 G72 1 A 1 HETATM 36 C C27 G72 . . . C 3 3.732 29.324 38.464 1 47.39 ? C27 G72 1 A 1 HETATM 37 C C28 G72 . . . C 3 2.865 28.248 39.122 1 49.15 ? C28 G72 1 A 1 HETATM 38 C C29 G72 . . . C 3 3.767 27.186 39.752 1 52.02 ? C29 G72 1 A 1 HETATM 39 C C30 G72 . . . C 3 3.033 26.194 40.652 1 58.4 ? C30 G72 1 A 1 HETATM 40 C C31 G72 . . . C 3 3.925 25.792 41.82 1 61.87 ? C31 G72 1 A 1 HETATM 41 C C32 G72 . . . C 3 1.724 26.768 41.177 1 55.38 ? C32 G72 1 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #