data_3O1E
#
_model_server_result.job_id            zoTgYHUVZKFieKrVii6DLA 
_model_server_result.datetime_utc      '2024-10-12 15:27:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o1e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3O1E 
#
_exptl.entry_id    3O1E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              594.669 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,3R,7E,17beta)-17-[(1R)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,1 0-secoestra-5,7-diene-1,3-diol' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3O1E 
_cell.length_a            65.842 
_cell.length_b            65.842 
_cell.length_c            263.718 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O1E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.921 57.020845 43.953 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H44 F6 O4' 
_chem_comp.formula_weight    594.669 
_chem_comp.id                H97 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,3R,7E,17beta)-17-[(1R)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,1 0-secoestra-5,7-diene-1,3-diol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,25-dihydroxy-20R-21(3-trideuteromethyl-3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27-hexafluoro-19-nor-cholecalcifero l (Gemini--0097)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C1 H97 sing 129 n n 
C2 C1 H97 sing 130 n n 
O1 C1 H97 sing 131 n n 
C1 H1 H97 sing 132 n n 
F1 C26 H97 sing 133 n n 
O1 HO1 H97 sing 134 n n 
C2 C3 H97 sing 135 n n 
C2 H2 H97 sing 136 n n 
C2 H2A H97 sing 137 n n 
C26 F2 H97 sing 138 n n 
C3 O2 H97 sing 139 n n 
O2 HO2 H97 sing 140 n n 
C4 C3 H97 sing 141 n n 
C3 H3 H97 sing 142 n n 
F3 C26 H97 sing 143 n n 
C24 O3 H97 sing 144 n n 
O3 HO3 H97 sing 145 n n 
C4 C5 H97 sing 146 n n 
C4 H4 H97 sing 147 n n 
C4 H4A H97 sing 148 n n 
F4 C25 H97 sing 149 n n 
O4 C30 H97 sing 150 n n 
O4 HO4 H97 sing 151 n n 
C10 C5 H97 sing 152 n n 
C5 C6 H97 doub 153 n n 
C25 F5 H97 sing 154 e n 
C6 C7 H97 sing 155 n n 
C6 H6 H97 sing 156 n n 
F6 C25 H97 sing 157 n n 
C8 C7 H97 doub 158 n n 
C7 H7 H97 sing 159 n n 
C9 C8 H97 sing 160 n n 
C8 C14 H97 sing 161 n n 
C11 C9 H97 sing 162 n n 
C9 H9 H97 sing 163 n n 
C9 H9A H97 sing 164 n n 
C10 H10 H97 sing 165 n n 
C10 H10A H97 sing 166 n n 
C11 C12 H97 sing 167 n n 
C11 H11 H97 sing 168 n n 
C11 H11A H97 sing 169 n n 
C12 C13 H97 sing 170 n n 
C12 H12 H97 sing 171 n n 
C12 H12A H97 sing 172 n n 
C18 C13 H97 sing 173 n n 
C13 C17 H97 sing 174 n n 
C13 C14 H97 sing 175 n n 
C14 C15 H97 sing 176 n n 
C14 H14 H97 sing 177 n n 
C16 C15 H97 sing 178 n n 
C15 H15 H97 sing 179 n n 
C15 H15A H97 sing 180 n n 
C17 C16 H97 sing 181 n n 
C16 H16 H97 sing 182 n n 
C16 H16A H97 sing 183 n n 
C20 C17 H97 sing 184 n n 
C17 H17 H97 sing 185 n n 
C18 H18 H97 sing 186 n n 
C18 H18A H97 sing 187 n n 
C18 H18B H97 sing 188 n n 
C21 C20 H97 sing 189 n n 
C20 C27 H97 sing 190 n n 
C20 H20 H97 sing 191 n n 
C22 C21 H97 sing 192 n n 
C21 H21 H97 sing 193 n n 
C21 H21A H97 sing 194 n n 
C23 C22 H97 trip 195 n n 
C24 C23 H97 sing 196 n n 
C26 C24 H97 sing 197 n n 
C25 C24 H97 sing 198 n n 
C27 C28 H97 sing 199 n n 
C27 H27 H97 sing 200 n n 
C27 H27A H97 sing 201 n n 
C28 C29 H97 sing 202 n n 
C28 H28 H97 sing 203 n n 
C28 H28A H97 sing 204 n n 
C29 C30 H97 sing 205 n n 
C29 H29 H97 sing 206 n n 
C29 H29A H97 sing 207 n n 
C30 C32 H97 sing 208 n n 
C30 C31 H97 sing 209 n n 
C31 H31 H97 sing 210 n n 
C31 H31A H97 sing 211 n n 
C31 H31B H97 sing 212 n n 
C32 H32 H97 sing 213 n n 
C32 H32A H97 sing 214 n n 
C32 H32B H97 sing 215 n n 
#
_atom_sites.entry_id                     3O1E 
_atom_sites.fract_transf_matrix[1][1]    0.015188 
_atom_sites.fract_transf_matrix[1][2]    0.008769 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017537 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003792 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 H97 A 1 1 1 H97 H97 . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 14 14 HOH HOH . 
D 4 HOH A 13 15 15 HOH HOH . 
D 4 HOH A 14 16 16 HOH HOH . 
D 4 HOH A 15 17 17 HOH HOH . 
D 4 HOH A 16 18 18 HOH HOH . 
D 4 HOH A 17 19 19 HOH HOH . 
D 4 HOH A 18 20 20 HOH HOH . 
D 4 HOH A 19 21 21 HOH HOH . 
D 4 HOH A 20 454 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 H97 . . . C 3 2.592 39.827 38.699 1 39.83 ? C1 H97 1 A 1 
HETATM 2 F F1 H97 . . . C 3 3.734 27.272 32.191 1 78.17 ? F1 H97 1 A 1 
HETATM 3 O O1 H97 . . . C 3 3.974 39.897 38.316 1 38.16 ? O1 H97 1 A 1 
HETATM 4 C C2 H97 . . . C 3 1.876 41.054 38.154 1 32.6 ? C2 H97 1 A 1 
HETATM 5 F F2 H97 . . . C 3 2.394 28.291 33.546 1 84.41 ? F2 H97 1 A 1 
HETATM 6 O O2 H97 . . . C 3 0.291 41.09 39.942 1 46.36 ? O2 H97 1 A 1 
HETATM 7 C C3 H97 . . . C 3 0.404 41.028 38.523 1 40.09 ? C3 H97 1 A 1 
HETATM 8 F F3 H97 . . . C 3 3.309 29.446 31.961 1 75.69 ? F3 H97 1 A 1 
HETATM 9 O O3 H97 . . . C 3 5.202 27.366 33.922 1 51 ? O3 H97 1 A 1 
HETATM 10 C C4 H97 . . . C 3 -0.306 39.771 37.987 1 38.89 ? C4 H97 1 A 1 
HETATM 11 F F4 H97 . . . C 3 5.802 28.778 31.668 1 61.35 ? F4 H97 1 A 1 
HETATM 12 O O4 H97 . . . C 3 2.339 25.638 39.604 1 82.71 ? O4 H97 1 A 1 
HETATM 13 C C5 H97 . . . C 3 0.486 38.52 38.287 1 38.6 ? C5 H97 1 A 1 
HETATM 14 F F5 H97 . . . C 3 6.801 29.468 33.472 1 69.63 ? F5 H97 1 A 1 
HETATM 15 C C6 H97 . . . C 3 -0.154 37.388 38.653 1 40.64 ? C6 H97 1 A 1 
HETATM 16 F F6 H97 . . . C 3 5.176 30.621 32.484 1 45.54 ? F6 H97 1 A 1 
HETATM 17 C C7 H97 . . . C 3 0.551 36.135 38.961 1 39.26 ? C7 H97 1 A 1 
HETATM 18 C C8 H97 . . . C 3 -0.086 34.955 38.869 1 46.85 ? C8 H97 1 A 1 
HETATM 19 C C9 H97 . . . C 3 -1.526 34.876 38.402 1 49.32 ? C9 H97 1 A 1 
HETATM 20 C C10 H97 . . . C 3 1.985 38.552 38.129 1 35.12 ? C10 H97 1 A 1 
HETATM 21 C C11 H97 . . . C 3 -1.609 33.914 37.211 1 52.03 ? C11 H97 1 A 1 
HETATM 22 C C12 H97 . . . C 3 -0.864 32.59 37.415 1 53.71 ? C12 H97 1 A 1 
HETATM 23 C C13 H97 . . . C 3 0.569 32.829 37.858 1 52.43 ? C13 H97 1 A 1 
HETATM 24 C C14 H97 . . . C 3 0.542 33.617 39.154 1 54.11 ? C14 H97 1 A 1 
HETATM 25 C C15 H97 . . . C 3 1.981 33.549 39.646 1 56.29 ? C15 H97 1 A 1 
HETATM 26 C C16 H97 . . . C 3 2.482 32.192 39.13 1 59.19 ? C16 H97 1 A 1 
HETATM 27 C C17 H97 . . . C 3 1.364 31.597 38.266 1 60.25 ? C17 H97 1 A 1 
HETATM 28 C C18 H97 . . . C 3 1.345 33.64 36.824 1 37.44 ? C18 H97 1 A 1 
HETATM 29 C C20 H97 . . . C 3 1.859 30.688 37.129 1 62.15 ? C20 H97 1 A 1 
HETATM 30 C C21 H97 . . . C 3 3.372 30.777 36.952 1 58.19 ? C21 H97 1 A 1 
HETATM 31 C C22 H97 . . . C 3 3.833 30.026 35.776 1 58.71 ? C22 H97 1 A 1 
HETATM 32 C C23 H97 . . . C 3 4.207 29.421 34.827 1 62.18 ? C23 H97 1 A 1 
HETATM 33 C C24 H97 . . . C 3 4.668 28.663 33.646 1 61.67 ? C24 H97 1 A 1 
HETATM 34 C C25 H97 . . . C 3 5.655 29.432 32.801 1 60.9 ? C25 H97 1 A 1 
HETATM 35 C C26 H97 . . . C 3 3.467 28.417 32.79 1 75.85 ? C26 H97 1 A 1 
HETATM 36 C C27 H97 . . . C 3 1.438 29.223 37.359 1 67.55 ? C27 H97 1 A 1 
HETATM 37 C C28 H97 . . . C 3 2.36 28.405 38.292 1 72 ? C28 H97 1 A 1 
HETATM 38 C C29 H97 . . . C 3 1.733 28 39.635 1 76.3 ? C29 H97 1 A 1 
HETATM 39 C C30 H97 . . . C 3 2.429 26.844 40.371 1 78.03 ? C30 H97 1 A 1 
HETATM 40 C C31 H97 . . . C 3 1.769 26.564 41.713 1 70.58 ? C31 H97 1 A 1 
HETATM 41 C C32 H97 . . . C 3 3.894 27.147 40.627 1 80.21 ? C32 H97 1 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           100 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           379 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           41 
#