data_3O1V # _model_server_result.job_id L-6ck0E3ze6dyHT80eoNmA _model_server_result.datetime_utc '2024-10-19 13:32:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3O1V # _exptl.entry_id 3O1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.04 _cell.angle_gamma 90 _cell.entry_id 3O1V _cell.length_a 41.582 _cell.length_b 76.24 _cell.length_c 52.413 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 119 A CYS 129 1_555 B S 2YR 9 B 2YR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale2 B O3' DA 6 B DA 7 1_555 B P MDJ 7 B MDJ 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale3 B O3' MDJ 7 B MDJ 8 1_555 B P DA 8 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale4 B O3' DA 8 B DA 9 1_555 B P 2YR 9 B 2YR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale5 B O3' 2YR 9 B 2YR 10 1_555 B P DC 10 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A NE2 HIS 121 A HIS 131 1_555 D FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A OD1 ASP 123 A ASP 133 1_555 D FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A NE2 HIS 177 A HIS 187 1_555 D FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 D FE FE . A FE 301 1_555 E O1 SIN . A SIN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 D FE FE . A FE 301 1_555 E O2 SIN . A SIN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc6 D FE FE . A FE 301 1_555 F O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 B DA 2 1_555 C N3 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 B DA 2 1_555 C O4 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 2 B DG 3 1_555 C N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 2 B DG 3 1_555 C O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 2 B DG 3 1_555 C N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 B DG 4 1_555 C N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 B DG 4 1_555 C O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 B DG 4 1_555 C N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 4 B DT 5 1_555 C N1 DA 10 C DA 10 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 4 B DT 5 1_555 C N6 DA 10 C DA 10 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DA 5 B DA 6 1_555 C N3 DT 9 C DT 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 DA 5 B DA 6 1_555 C O4 DT 9 C DT 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DA 8 B DA 9 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 DA 8 B DA 9 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 10 B DC 11 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 10 B DC 11 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 10 B DC 11 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 11 B DG 12 1_555 C N3 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 DG 11 B DG 12 1_555 C O2 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 DG 11 B DG 12 1_555 C N4 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 12 B DT 13 1_555 C N1 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 12 B DT 13 1_555 C N6 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O1V _atom_sites.fract_transf_matrix[1][1] 0.024049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007833 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 301 1 FE FE . E 5 SIN A 1 302 217 SIN SIN . F 6 HOH A 1 401 2 HOH HOH . F 6 HOH A 2 402 3 HOH HOH . F 6 HOH A 3 403 4 HOH HOH . F 6 HOH A 4 404 6 HOH HOH . F 6 HOH A 5 405 7 HOH HOH . F 6 HOH A 6 406 9 HOH HOH . F 6 HOH A 7 407 10 HOH HOH . F 6 HOH A 8 408 218 HOH HOH . F 6 HOH A 9 409 219 HOH HOH . F 6 HOH A 10 410 220 HOH HOH . F 6 HOH A 11 411 221 HOH HOH . F 6 HOH A 12 412 222 HOH HOH . F 6 HOH A 13 413 223 HOH HOH . F 6 HOH A 14 414 224 HOH HOH . F 6 HOH A 15 415 225 HOH HOH . F 6 HOH A 16 416 226 HOH HOH . F 6 HOH A 17 417 227 HOH HOH . F 6 HOH A 18 418 228 HOH HOH . F 6 HOH A 19 419 229 HOH HOH . F 6 HOH A 20 420 230 HOH HOH . F 6 HOH A 21 421 231 HOH HOH . F 6 HOH A 22 422 232 HOH HOH . F 6 HOH A 23 423 233 HOH HOH . F 6 HOH A 24 424 234 HOH HOH . F 6 HOH A 25 425 235 HOH HOH . F 6 HOH A 26 426 236 HOH HOH . F 6 HOH A 27 427 237 HOH HOH . F 6 HOH A 28 428 238 HOH HOH . F 6 HOH A 29 429 239 HOH HOH . F 6 HOH A 30 430 240 HOH HOH . F 6 HOH A 31 431 241 HOH HOH . F 6 HOH A 32 432 242 HOH HOH . F 6 HOH A 33 433 243 HOH HOH . F 6 HOH A 34 434 244 HOH HOH . F 6 HOH A 35 435 245 HOH HOH . F 6 HOH A 36 436 246 HOH HOH . F 6 HOH A 37 437 247 HOH HOH . F 6 HOH A 38 438 248 HOH HOH . F 6 HOH A 39 439 249 HOH HOH . F 6 HOH A 40 440 250 HOH HOH . F 6 HOH A 41 441 251 HOH HOH . F 6 HOH A 42 442 252 HOH HOH . F 6 HOH A 43 443 253 HOH HOH . F 6 HOH A 44 444 254 HOH HOH . F 6 HOH A 45 445 255 HOH HOH . F 6 HOH A 46 446 256 HOH HOH . F 6 HOH A 47 447 257 HOH HOH . F 6 HOH A 48 448 258 HOH HOH . F 6 HOH A 49 449 259 HOH HOH . F 6 HOH A 50 450 260 HOH HOH . F 6 HOH A 51 451 261 HOH HOH . F 6 HOH A 52 452 262 HOH HOH . F 6 HOH A 53 453 263 HOH HOH . F 6 HOH A 54 454 264 HOH HOH . F 6 HOH A 55 455 265 HOH HOH . F 6 HOH A 56 456 266 HOH HOH . F 6 HOH A 57 457 267 HOH HOH . F 6 HOH A 58 458 268 HOH HOH . F 6 HOH A 59 459 269 HOH HOH . F 6 HOH A 60 460 270 HOH HOH . F 6 HOH A 61 461 271 HOH HOH . F 6 HOH A 62 462 272 HOH HOH . F 6 HOH A 63 463 273 HOH HOH . F 6 HOH A 64 464 274 HOH HOH . F 6 HOH A 65 465 275 HOH HOH . F 6 HOH A 66 466 276 HOH HOH . F 6 HOH A 67 467 277 HOH HOH . F 6 HOH A 68 468 278 HOH HOH . F 6 HOH A 69 469 279 HOH HOH . F 6 HOH A 70 470 280 HOH HOH . F 6 HOH A 71 471 281 HOH HOH . F 6 HOH A 72 472 282 HOH HOH . F 6 HOH A 73 473 283 HOH HOH . F 6 HOH A 74 474 284 HOH HOH . F 6 HOH A 75 475 285 HOH HOH . F 6 HOH A 76 476 286 HOH HOH . F 6 HOH A 77 477 287 HOH HOH . F 6 HOH A 78 478 288 HOH HOH . F 6 HOH A 79 479 289 HOH HOH . F 6 HOH A 80 480 290 HOH HOH . F 6 HOH A 81 481 291 HOH HOH . F 6 HOH A 82 482 292 HOH HOH . F 6 HOH A 83 483 293 HOH HOH . F 6 HOH A 84 484 294 HOH HOH . F 6 HOH A 85 485 295 HOH HOH . F 6 HOH A 86 486 296 HOH HOH . F 6 HOH A 87 487 297 HOH HOH . F 6 HOH A 88 488 298 HOH HOH . F 6 HOH A 89 489 299 HOH HOH . F 6 HOH A 90 490 300 HOH HOH . F 6 HOH A 91 491 301 HOH HOH . F 6 HOH A 92 492 302 HOH HOH . F 6 HOH A 93 493 303 HOH HOH . F 6 HOH A 94 494 304 HOH HOH . F 6 HOH A 95 495 305 HOH HOH . F 6 HOH A 96 496 306 HOH HOH . F 6 HOH A 97 497 307 HOH HOH . F 6 HOH A 98 498 308 HOH HOH . F 6 HOH A 99 499 309 HOH HOH . F 6 HOH A 100 500 310 HOH HOH . F 6 HOH A 101 501 311 HOH HOH . F 6 HOH A 102 502 312 HOH HOH . F 6 HOH A 103 503 313 HOH HOH . F 6 HOH A 104 504 314 HOH HOH . F 6 HOH A 105 505 315 HOH HOH . F 6 HOH A 106 506 316 HOH HOH . F 6 HOH A 107 507 317 HOH HOH . F 6 HOH A 108 508 318 HOH HOH . F 6 HOH A 109 509 319 HOH HOH . F 6 HOH A 110 510 320 HOH HOH . F 6 HOH A 111 511 321 HOH HOH . F 6 HOH A 112 512 322 HOH HOH . F 6 HOH A 113 513 323 HOH HOH . F 6 HOH A 114 514 325 HOH HOH . F 6 HOH A 115 515 326 HOH HOH . F 6 HOH A 116 516 327 HOH HOH . F 6 HOH A 117 517 328 HOH HOH . F 6 HOH A 118 518 329 HOH HOH . F 6 HOH A 119 519 330 HOH HOH . F 6 HOH A 120 520 331 HOH HOH . F 6 HOH A 121 521 332 HOH HOH . F 6 HOH A 122 522 333 HOH HOH . F 6 HOH A 123 523 334 HOH HOH . F 6 HOH A 124 524 335 HOH HOH . F 6 HOH A 125 525 336 HOH HOH . F 6 HOH A 126 526 337 HOH HOH . F 6 HOH A 127 527 338 HOH HOH . F 6 HOH A 128 528 339 HOH HOH . F 6 HOH A 129 529 340 HOH HOH . F 6 HOH A 130 530 341 HOH HOH . F 6 HOH A 131 531 342 HOH HOH . F 6 HOH A 132 532 343 HOH HOH . F 6 HOH A 133 533 344 HOH HOH . F 6 HOH A 134 534 345 HOH HOH . F 6 HOH A 135 535 346 HOH HOH . F 6 HOH A 136 536 347 HOH HOH . F 6 HOH A 137 537 348 HOH HOH . F 6 HOH A 138 538 350 HOH HOH . F 6 HOH A 139 539 351 HOH HOH . F 6 HOH A 140 540 352 HOH HOH . F 6 HOH A 141 541 353 HOH HOH . F 6 HOH A 142 542 354 HOH HOH . F 6 HOH A 143 543 355 HOH HOH . F 6 HOH A 144 544 356 HOH HOH . F 6 HOH A 145 545 357 HOH HOH . F 6 HOH A 146 546 358 HOH HOH . F 6 HOH A 147 547 359 HOH HOH . F 6 HOH A 148 548 360 HOH HOH . F 6 HOH A 149 549 361 HOH HOH . F 6 HOH A 150 550 362 HOH HOH . G 6 HOH B 1 101 14 HOH HOH . G 6 HOH B 2 102 15 HOH HOH . G 6 HOH B 3 103 16 HOH HOH . G 6 HOH B 4 104 17 HOH HOH . G 6 HOH B 5 105 26 HOH HOH . G 6 HOH B 6 106 27 HOH HOH . G 6 HOH B 7 107 31 HOH HOH . G 6 HOH B 8 108 33 HOH HOH . G 6 HOH B 9 109 35 HOH HOH . G 6 HOH B 10 110 40 HOH HOH . G 6 HOH B 11 111 43 HOH HOH . G 6 HOH B 12 112 47 HOH HOH . G 6 HOH B 13 113 63 HOH HOH . G 6 HOH B 14 114 65 HOH HOH . G 6 HOH B 15 115 66 HOH HOH . G 6 HOH B 16 116 85 HOH HOH . G 6 HOH B 17 117 91 HOH HOH . G 6 HOH B 18 118 100 HOH HOH . G 6 HOH B 19 119 112 HOH HOH . G 6 HOH B 20 120 113 HOH HOH . G 6 HOH B 21 121 115 HOH HOH . G 6 HOH B 22 122 125 HOH HOH . G 6 HOH B 23 123 126 HOH HOH . G 6 HOH B 24 124 127 HOH HOH . G 6 HOH B 25 125 150 HOH HOH . G 6 HOH B 26 126 166 HOH HOH . G 6 HOH B 27 127 167 HOH HOH . G 6 HOH B 28 128 168 HOH HOH . G 6 HOH B 29 129 186 HOH HOH . G 6 HOH B 30 130 187 HOH HOH . G 6 HOH B 31 131 197 HOH HOH . G 6 HOH B 32 132 198 HOH HOH . H 6 HOH C 1 101 36 HOH HOH . H 6 HOH C 2 102 48 HOH HOH . H 6 HOH C 3 103 81 HOH HOH . H 6 HOH C 4 104 93 HOH HOH . H 6 HOH C 5 105 107 HOH HOH . H 6 HOH C 6 106 124 HOH HOH . H 6 HOH C 7 107 128 HOH HOH . H 6 HOH C 8 108 131 HOH HOH . H 6 HOH C 9 109 132 HOH HOH . H 6 HOH C 10 110 133 HOH HOH . H 6 HOH C 11 111 134 HOH HOH . H 6 HOH C 12 112 192 HOH HOH . H 6 HOH C 13 113 193 HOH HOH . H 6 HOH C 14 114 194 HOH HOH . H 6 HOH C 15 115 255 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.177 _atom_site.Cartn_y -0.529 _atom_site.Cartn_z 20.35 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #