data_3O1X # _model_server_result.job_id gogELR0eTk2YtQ8K-aeoUg _model_server_result.datetime_utc '2025-08-02 22:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1450}' # _entry.id 3O1X # _exptl.entry_id 3O1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O1X _cell.length_a 39.765 _cell.length_b 39.765 _cell.length_c 141.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 83 A LYS 83 1_555 C NA NA . A NA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc2 A OD1 ASP 87 A ASP 87 1_555 C NA NA . A NA 127 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc3 C NA NA . A NA 127 1_555 D O HOH . A HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc4 C NA NA . A NA 127 1_555 D O HOH . A HOH 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc5 C NA NA . A NA 127 1_555 D O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3O1X _atom_sites.fract_transf_matrix[1][1] 0.025148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 1450 1450 ADN ADN . C 3 NA A 1 127 1 NA NA . D 4 HOH A 1 128 128 HOH HOH . D 4 HOH A 2 129 129 HOH HOH . D 4 HOH A 3 130 130 HOH HOH . D 4 HOH A 4 131 131 HOH HOH . D 4 HOH A 5 132 132 HOH HOH . D 4 HOH A 6 133 133 HOH HOH . D 4 HOH A 7 134 134 HOH HOH . D 4 HOH A 8 135 135 HOH HOH . D 4 HOH A 9 136 136 HOH HOH . D 4 HOH A 10 137 137 HOH HOH . D 4 HOH A 11 138 138 HOH HOH . D 4 HOH A 12 139 139 HOH HOH . D 4 HOH A 13 140 140 HOH HOH . D 4 HOH A 14 141 141 HOH HOH . D 4 HOH A 15 142 142 HOH HOH . D 4 HOH A 16 143 143 HOH HOH . D 4 HOH A 17 144 144 HOH HOH . D 4 HOH A 18 145 145 HOH HOH . D 4 HOH A 19 146 146 HOH HOH . D 4 HOH A 20 147 147 HOH HOH . D 4 HOH A 21 148 148 HOH HOH . D 4 HOH A 22 149 149 HOH HOH . D 4 HOH A 23 150 150 HOH HOH . D 4 HOH A 24 151 151 HOH HOH . D 4 HOH A 25 152 152 HOH HOH . D 4 HOH A 26 153 153 HOH HOH . D 4 HOH A 27 154 154 HOH HOH . D 4 HOH A 28 155 155 HOH HOH . D 4 HOH A 29 156 156 HOH HOH . D 4 HOH A 30 157 157 HOH HOH . D 4 HOH A 31 158 158 HOH HOH . D 4 HOH A 32 159 159 HOH HOH . D 4 HOH A 33 160 160 HOH HOH . D 4 HOH A 34 161 161 HOH HOH . D 4 HOH A 35 162 162 HOH HOH . D 4 HOH A 36 163 163 HOH HOH . D 4 HOH A 37 164 164 HOH HOH . D 4 HOH A 38 165 165 HOH HOH . D 4 HOH A 39 166 166 HOH HOH . D 4 HOH A 40 167 167 HOH HOH . D 4 HOH A 41 168 168 HOH HOH . D 4 HOH A 42 169 169 HOH HOH . D 4 HOH A 43 170 170 HOH HOH . D 4 HOH A 44 171 171 HOH HOH . D 4 HOH A 45 172 172 HOH HOH . D 4 HOH A 46 173 173 HOH HOH . D 4 HOH A 47 174 174 HOH HOH . D 4 HOH A 48 175 175 HOH HOH . D 4 HOH A 49 176 176 HOH HOH . D 4 HOH A 50 177 177 HOH HOH . D 4 HOH A 51 178 178 HOH HOH . D 4 HOH A 52 179 179 HOH HOH . D 4 HOH A 53 180 180 HOH HOH . D 4 HOH A 54 181 181 HOH HOH . D 4 HOH A 55 182 182 HOH HOH . D 4 HOH A 56 183 183 HOH HOH . D 4 HOH A 57 184 184 HOH HOH . D 4 HOH A 58 185 185 HOH HOH . D 4 HOH A 59 186 186 HOH HOH . D 4 HOH A 60 187 187 HOH HOH . D 4 HOH A 61 188 188 HOH HOH . D 4 HOH A 62 189 189 HOH HOH . D 4 HOH A 63 190 190 HOH HOH . D 4 HOH A 64 191 191 HOH HOH . D 4 HOH A 65 192 192 HOH HOH . D 4 HOH A 66 193 193 HOH HOH . D 4 HOH A 67 194 194 HOH HOH . D 4 HOH A 68 195 195 HOH HOH . D 4 HOH A 69 196 196 HOH HOH . D 4 HOH A 70 197 197 HOH HOH . D 4 HOH A 71 198 198 HOH HOH . D 4 HOH A 72 199 199 HOH HOH . D 4 HOH A 73 200 200 HOH HOH . D 4 HOH A 74 201 201 HOH HOH . D 4 HOH A 75 202 202 HOH HOH . D 4 HOH A 76 203 203 HOH HOH . D 4 HOH A 77 204 204 HOH HOH . D 4 HOH A 78 205 205 HOH HOH . D 4 HOH A 79 206 206 HOH HOH . D 4 HOH A 80 207 207 HOH HOH . D 4 HOH A 81 208 208 HOH HOH . D 4 HOH A 82 209 209 HOH HOH . D 4 HOH A 83 210 210 HOH HOH . D 4 HOH A 84 211 1 HOH HOH . D 4 HOH A 85 212 2 HOH HOH . D 4 HOH A 86 213 3 HOH HOH . D 4 HOH A 87 214 4 HOH HOH . D 4 HOH A 88 215 5 HOH HOH . D 4 HOH A 89 216 6 HOH HOH . D 4 HOH A 90 217 7 HOH HOH . D 4 HOH A 91 218 8 HOH HOH . D 4 HOH A 92 219 9 HOH HOH . D 4 HOH A 93 220 10 HOH HOH . D 4 HOH A 94 221 11 HOH HOH . D 4 HOH A 95 222 12 HOH HOH . D 4 HOH A 96 223 13 HOH HOH . D 4 HOH A 97 224 14 HOH HOH . D 4 HOH A 98 225 15 HOH HOH . D 4 HOH A 99 226 16 HOH HOH . D 4 HOH A 100 227 17 HOH HOH . D 4 HOH A 101 228 18 HOH HOH . D 4 HOH A 102 229 19 HOH HOH . D 4 HOH A 103 230 20 HOH HOH . D 4 HOH A 104 231 21 HOH HOH . D 4 HOH A 105 232 22 HOH HOH . D 4 HOH A 106 233 23 HOH HOH . D 4 HOH A 107 234 24 HOH HOH . D 4 HOH A 108 235 25 HOH HOH . D 4 HOH A 109 236 26 HOH HOH . D 4 HOH A 110 237 27 HOH HOH . D 4 HOH A 111 238 28 HOH HOH . D 4 HOH A 112 239 29 HOH HOH . D 4 HOH A 113 240 30 HOH HOH . D 4 HOH A 114 241 31 HOH HOH . D 4 HOH A 115 242 32 HOH HOH . D 4 HOH A 116 243 33 HOH HOH . D 4 HOH A 117 244 34 HOH HOH . D 4 HOH A 118 245 35 HOH HOH . D 4 HOH A 119 246 36 HOH HOH . D 4 HOH A 120 247 37 HOH HOH . D 4 HOH A 121 248 38 HOH HOH . D 4 HOH A 122 249 39 HOH HOH . D 4 HOH A 123 250 40 HOH HOH . D 4 HOH A 124 251 41 HOH HOH . D 4 HOH A 125 252 42 HOH HOH . D 4 HOH A 126 253 43 HOH HOH . D 4 HOH A 127 254 44 HOH HOH . D 4 HOH A 128 255 45 HOH HOH . D 4 HOH A 129 256 46 HOH HOH . D 4 HOH A 130 257 47 HOH HOH . D 4 HOH A 131 258 48 HOH HOH . D 4 HOH A 132 259 49 HOH HOH . D 4 HOH A 133 260 50 HOH HOH . D 4 HOH A 134 261 51 HOH HOH . D 4 HOH A 135 262 52 HOH HOH . D 4 HOH A 136 263 53 HOH HOH . D 4 HOH A 137 264 54 HOH HOH . D 4 HOH A 138 265 55 HOH HOH . D 4 HOH A 139 266 56 HOH HOH . D 4 HOH A 140 267 57 HOH HOH . D 4 HOH A 141 268 58 HOH HOH . D 4 HOH A 142 269 59 HOH HOH . D 4 HOH A 143 270 60 HOH HOH . D 4 HOH A 144 271 61 HOH HOH . D 4 HOH A 145 272 62 HOH HOH . D 4 HOH A 146 273 63 HOH HOH . D 4 HOH A 147 274 64 HOH HOH . D 4 HOH A 148 275 65 HOH HOH . D 4 HOH A 149 276 66 HOH HOH . D 4 HOH A 150 277 67 HOH HOH . D 4 HOH A 151 278 68 HOH HOH . D 4 HOH A 152 279 69 HOH HOH . D 4 HOH A 153 280 70 HOH HOH . D 4 HOH A 154 281 71 HOH HOH . D 4 HOH A 155 282 72 HOH HOH . D 4 HOH A 156 283 73 HOH HOH . D 4 HOH A 157 284 74 HOH HOH . D 4 HOH A 158 285 75 HOH HOH . D 4 HOH A 159 286 76 HOH HOH . D 4 HOH A 160 287 77 HOH HOH . D 4 HOH A 161 288 78 HOH HOH . D 4 HOH A 162 289 79 HOH HOH . D 4 HOH A 163 290 80 HOH HOH . D 4 HOH A 164 291 81 HOH HOH . D 4 HOH A 165 292 82 HOH HOH . D 4 HOH A 166 293 83 HOH HOH . D 4 HOH A 167 294 84 HOH HOH . D 4 HOH A 168 295 85 HOH HOH . D 4 HOH A 169 296 86 HOH HOH . D 4 HOH A 170 297 87 HOH HOH . D 4 HOH A 171 298 88 HOH HOH . D 4 HOH A 172 299 89 HOH HOH . D 4 HOH A 173 300 90 HOH HOH . D 4 HOH A 174 301 91 HOH HOH . D 4 HOH A 175 302 92 HOH HOH . D 4 HOH A 176 303 93 HOH HOH . D 4 HOH A 177 304 94 HOH HOH . D 4 HOH A 178 305 95 HOH HOH . D 4 HOH A 179 306 96 HOH HOH . D 4 HOH A 180 307 97 HOH HOH . D 4 HOH A 181 308 98 HOH HOH . D 4 HOH A 182 309 99 HOH HOH . D 4 HOH A 183 310 100 HOH HOH . D 4 HOH A 184 311 101 HOH HOH . D 4 HOH A 185 312 102 HOH HOH . D 4 HOH A 186 313 103 HOH HOH . D 4 HOH A 187 314 104 HOH HOH . D 4 HOH A 188 315 105 HOH HOH . D 4 HOH A 189 316 106 HOH HOH . D 4 HOH A 190 317 107 HOH HOH . D 4 HOH A 191 318 108 HOH HOH . D 4 HOH A 192 319 109 HOH HOH . D 4 HOH A 193 320 110 HOH HOH . D 4 HOH A 194 321 111 HOH HOH . D 4 HOH A 195 322 112 HOH HOH . D 4 HOH A 196 323 113 HOH HOH . D 4 HOH A 197 324 114 HOH HOH . D 4 HOH A 198 325 115 HOH HOH . D 4 HOH A 199 326 116 HOH HOH . D 4 HOH A 200 327 117 HOH HOH . D 4 HOH A 201 328 118 HOH HOH . D 4 HOH A 202 329 119 HOH HOH . D 4 HOH A 203 330 120 HOH HOH . D 4 HOH A 204 331 121 HOH HOH . D 4 HOH A 205 332 122 HOH HOH . D 4 HOH A 206 333 123 HOH HOH . D 4 HOH A 207 334 124 HOH HOH . D 4 HOH A 208 335 125 HOH HOH . D 4 HOH A 209 336 126 HOH HOH . D 4 HOH A 210 337 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 8.468 10.774 11.348 0.7 20.61 ? O5' ADN 1450 A 1 HETATM 2 C C5' ADN . . . B 2 8.814 10.669 12.729 0.7 22.09 ? C5' ADN 1450 A 1 HETATM 3 C C4' ADN . . . B 2 9.536 9.369 12.916 0.7 19.29 ? C4' ADN 1450 A 1 HETATM 4 O O4' ADN . . . B 2 10.14 9.399 14.189 0.7 19.15 ? O4' ADN 1450 A 1 HETATM 5 C C3' ADN . . . B 2 8.713 8.072 12.94 0.7 11.13 ? C3' ADN 1450 A 1 HETATM 6 O O3' ADN . . . B 2 9.068 7.204 11.797 0.7 17.11 ? O3' ADN 1450 A 1 HETATM 7 C C2' ADN . . . B 2 8.919 7.48 14.339 0.7 19.52 ? C2' ADN 1450 A 1 HETATM 8 O O2' ADN . . . B 2 8.842 6.097 14.417 0.7 19.75 ? O2' ADN 1450 A 1 HETATM 9 C C1' ADN . . . B 2 10.259 8.095 14.643 0.7 18.43 ? C1' ADN 1450 A 1 HETATM 10 N N9 ADN . . . B 2 10.512 8.228 16.107 0.7 19.62 ? N9 ADN 1450 A 1 HETATM 11 C C8 ADN . . . B 2 9.671 8.757 17.053 0.7 21.77 ? C8 ADN 1450 A 1 HETATM 12 N N7 ADN . . . B 2 10.291 8.783 18.179 0.7 21.32 ? N7 ADN 1450 A 1 HETATM 13 C C5 ADN . . . B 2 11.519 8.226 18.068 0.7 21.85 ? C5 ADN 1450 A 1 HETATM 14 C C6 ADN . . . B 2 12.685 7.954 18.934 0.7 21.68 ? C6 ADN 1450 A 1 HETATM 15 N N6 ADN . . . B 2 12.637 8.179 20.247 0.7 28.29 ? N6 ADN 1450 A 1 HETATM 16 N N1 ADN . . . B 2 13.757 7.378 18.323 0.7 24.73 ? N1 ADN 1450 A 1 HETATM 17 C C2 ADN . . . B 2 13.791 7.042 17.021 0.7 21.99 ? C2 ADN 1450 A 1 HETATM 18 N N3 ADN . . . B 2 12.779 7.289 16.111 0.7 18.78 ? N3 ADN 1450 A 1 HETATM 19 C C4 ADN . . . B 2 11.674 7.869 16.657 0.7 20.47 ? C4 ADN 1450 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 19 #