data_3O28 # _model_server_result.job_id l8G1j3W63jDcDMlStpXB6w _model_server_result.datetime_utc '2024-11-05 01:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":264}' # _entry.id 3O28 # _exptl.entry_id 3O28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({[3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl]acetyl}amino)-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O28 _cell.length_a 65.131 _cell.length_b 88.719 _cell.length_c 47.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 261 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 261 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H21 F3 N4 O2 S' _chem_comp.formula_weight 426.456 _chem_comp.id O28 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({[3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl]acetyl}amino)-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O28 _atom_sites.fract_transf_matrix[1][1] 0.015354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O28 A 1 264 1 O28 O28 . C 3 GLU A 1 265 1 GLU GLU . D 4 SO4 A 1 266 1 SO4 SO4 . E 4 SO4 A 1 267 2 SO4 SO4 . F 4 SO4 A 1 268 3 SO4 SO4 . G 5 DMS A 1 269 1 DMS DMS . H 6 GOL A 1 270 1 GOL GOL . I 6 GOL A 1 271 2 GOL GOL . J 6 GOL A 1 272 3 GOL GOL . K 6 GOL A 1 273 4 GOL GOL . L 6 GOL A 1 274 5 GOL GOL . M 6 GOL A 1 275 6 GOL GOL . N 7 HOH A 1 276 1 HOH HOH . N 7 HOH A 2 277 2 HOH HOH . N 7 HOH A 3 278 3 HOH HOH . N 7 HOH A 4 279 4 HOH HOH . N 7 HOH A 5 280 5 HOH HOH . N 7 HOH A 6 281 6 HOH HOH . N 7 HOH A 7 282 7 HOH HOH . N 7 HOH A 8 283 8 HOH HOH . N 7 HOH A 9 284 9 HOH HOH . N 7 HOH A 10 285 10 HOH HOH . N 7 HOH A 11 286 11 HOH HOH . N 7 HOH A 12 287 12 HOH HOH . N 7 HOH A 13 288 13 HOH HOH . N 7 HOH A 14 289 14 HOH HOH . N 7 HOH A 15 290 15 HOH HOH . N 7 HOH A 16 291 16 HOH HOH . N 7 HOH A 17 292 17 HOH HOH . N 7 HOH A 18 293 18 HOH HOH . N 7 HOH A 19 294 19 HOH HOH . N 7 HOH A 20 295 20 HOH HOH . N 7 HOH A 21 296 21 HOH HOH . N 7 HOH A 22 297 22 HOH HOH . N 7 HOH A 23 298 23 HOH HOH . N 7 HOH A 24 299 24 HOH HOH . N 7 HOH A 25 300 25 HOH HOH . N 7 HOH A 26 301 26 HOH HOH . N 7 HOH A 27 302 27 HOH HOH . N 7 HOH A 28 303 28 HOH HOH . N 7 HOH A 29 304 29 HOH HOH . N 7 HOH A 30 305 30 HOH HOH . N 7 HOH A 31 306 31 HOH HOH . N 7 HOH A 32 307 32 HOH HOH . N 7 HOH A 33 308 33 HOH HOH . N 7 HOH A 34 309 34 HOH HOH . N 7 HOH A 35 310 35 HOH HOH . N 7 HOH A 36 311 36 HOH HOH . N 7 HOH A 37 312 37 HOH HOH . N 7 HOH A 38 313 38 HOH HOH . N 7 HOH A 39 314 39 HOH HOH . N 7 HOH A 40 315 40 HOH HOH . N 7 HOH A 41 316 41 HOH HOH . N 7 HOH A 42 317 42 HOH HOH . N 7 HOH A 43 318 43 HOH HOH . N 7 HOH A 44 319 44 HOH HOH . N 7 HOH A 45 320 45 HOH HOH . N 7 HOH A 46 321 46 HOH HOH . N 7 HOH A 47 322 47 HOH HOH . N 7 HOH A 48 323 48 HOH HOH . N 7 HOH A 49 324 49 HOH HOH . N 7 HOH A 50 325 50 HOH HOH . N 7 HOH A 51 326 51 HOH HOH . N 7 HOH A 52 327 52 HOH HOH . N 7 HOH A 53 328 53 HOH HOH . N 7 HOH A 54 329 54 HOH HOH . N 7 HOH A 55 330 55 HOH HOH . N 7 HOH A 56 331 56 HOH HOH . N 7 HOH A 57 332 57 HOH HOH . N 7 HOH A 58 333 58 HOH HOH . N 7 HOH A 59 334 59 HOH HOH . N 7 HOH A 60 335 60 HOH HOH . N 7 HOH A 61 336 61 HOH HOH . N 7 HOH A 62 337 62 HOH HOH . N 7 HOH A 63 338 63 HOH HOH . N 7 HOH A 64 339 64 HOH HOH . N 7 HOH A 65 340 65 HOH HOH . N 7 HOH A 66 341 66 HOH HOH . N 7 HOH A 67 342 67 HOH HOH . N 7 HOH A 68 343 68 HOH HOH . N 7 HOH A 69 344 69 HOH HOH . N 7 HOH A 70 345 70 HOH HOH . N 7 HOH A 71 346 71 HOH HOH . N 7 HOH A 72 347 72 HOH HOH . N 7 HOH A 73 348 73 HOH HOH . N 7 HOH A 74 349 74 HOH HOH . N 7 HOH A 75 350 75 HOH HOH . N 7 HOH A 76 351 76 HOH HOH . N 7 HOH A 77 352 77 HOH HOH . N 7 HOH A 78 353 78 HOH HOH . N 7 HOH A 79 354 79 HOH HOH . N 7 HOH A 80 355 80 HOH HOH . N 7 HOH A 81 356 81 HOH HOH . N 7 HOH A 82 357 82 HOH HOH . N 7 HOH A 83 358 83 HOH HOH . N 7 HOH A 84 359 84 HOH HOH . N 7 HOH A 85 360 85 HOH HOH . N 7 HOH A 86 361 86 HOH HOH . N 7 HOH A 87 362 87 HOH HOH . N 7 HOH A 88 363 88 HOH HOH . N 7 HOH A 89 364 89 HOH HOH . N 7 HOH A 90 365 90 HOH HOH . N 7 HOH A 91 366 91 HOH HOH . N 7 HOH A 92 367 92 HOH HOH . N 7 HOH A 93 368 93 HOH HOH . N 7 HOH A 94 369 94 HOH HOH . N 7 HOH A 95 370 95 HOH HOH . N 7 HOH A 96 371 96 HOH HOH . N 7 HOH A 97 372 97 HOH HOH . N 7 HOH A 98 373 98 HOH HOH . N 7 HOH A 99 374 99 HOH HOH . N 7 HOH A 100 375 100 HOH HOH . N 7 HOH A 101 376 101 HOH HOH . N 7 HOH A 102 377 102 HOH HOH . N 7 HOH A 103 378 103 HOH HOH . N 7 HOH A 104 379 104 HOH HOH . N 7 HOH A 105 380 105 HOH HOH . N 7 HOH A 106 381 106 HOH HOH . N 7 HOH A 107 382 107 HOH HOH . N 7 HOH A 108 383 108 HOH HOH . N 7 HOH A 109 384 109 HOH HOH . N 7 HOH A 110 385 110 HOH HOH . N 7 HOH A 111 386 111 HOH HOH . N 7 HOH A 112 387 112 HOH HOH . N 7 HOH A 113 388 113 HOH HOH . N 7 HOH A 114 389 114 HOH HOH . N 7 HOH A 115 390 115 HOH HOH . N 7 HOH A 116 391 116 HOH HOH . N 7 HOH A 117 392 117 HOH HOH . N 7 HOH A 118 393 118 HOH HOH . N 7 HOH A 119 394 119 HOH HOH . N 7 HOH A 120 395 120 HOH HOH . N 7 HOH A 121 396 121 HOH HOH . N 7 HOH A 122 397 122 HOH HOH . N 7 HOH A 123 398 123 HOH HOH . N 7 HOH A 124 399 124 HOH HOH . N 7 HOH A 125 400 125 HOH HOH . N 7 HOH A 126 401 126 HOH HOH . N 7 HOH A 127 402 127 HOH HOH . N 7 HOH A 128 403 128 HOH HOH . N 7 HOH A 129 404 129 HOH HOH . N 7 HOH A 130 405 130 HOH HOH . N 7 HOH A 131 406 131 HOH HOH . N 7 HOH A 132 407 132 HOH HOH . N 7 HOH A 133 408 133 HOH HOH . N 7 HOH A 134 409 134 HOH HOH . N 7 HOH A 135 410 135 HOH HOH . N 7 HOH A 136 411 136 HOH HOH . N 7 HOH A 137 412 137 HOH HOH . N 7 HOH A 138 413 138 HOH HOH . N 7 HOH A 139 414 139 HOH HOH . N 7 HOH A 140 415 140 HOH HOH . N 7 HOH A 141 416 141 HOH HOH . N 7 HOH A 142 417 142 HOH HOH . N 7 HOH A 143 418 143 HOH HOH . N 7 HOH A 144 419 145 HOH HOH . N 7 HOH A 145 420 146 HOH HOH . N 7 HOH A 146 421 147 HOH HOH . N 7 HOH A 147 422 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 O28 . . . B 2 3.335 -1.296 20 0.5 19.28 ? F1 O28 264 A 1 HETATM 2 C C2 O28 . . . B 2 3.449 -2.462 19.413 0.5 19.78 ? C2 O28 264 A 1 HETATM 3 F F3 O28 . . . B 2 4.744 -2.724 19.204 0.5 20.1 ? F3 O28 264 A 1 HETATM 4 F F4 O28 . . . B 2 2.946 -3.365 20.251 0.5 22.41 ? F4 O28 264 A 1 HETATM 5 C C5 O28 . . . B 2 2.643 -2.386 18.129 0.5 19.55 ? C5 O28 264 A 1 HETATM 6 N N6 O28 . . . B 2 2.299 -1.235 17.58 0.5 19.52 ? N6 O28 264 A 1 HETATM 7 N N7 O28 . . . B 2 1.541 -1.551 16.392 0.5 19.2 ? N7 O28 264 A 1 HETATM 8 C C8 O28 . . . B 2 1.46 -2.921 16.257 0.5 21.21 ? C8 O28 264 A 1 HETATM 9 C C9 O28 . . . B 2 2.1 -3.49 17.291 0.5 19.25 ? C9 O28 264 A 1 HETATM 10 C C10 O28 . . . B 2 2.226 -4.99 17.476 0.5 19.92 ? C10 O28 264 A 1 HETATM 11 C C11 O28 . . . B 2 1.199 -5.725 16.6 0.5 20.48 ? C11 O28 264 A 1 HETATM 12 C C12 O28 . . . B 2 1.052 -5.148 15.187 0.5 20.14 ? C12 O28 264 A 1 HETATM 13 C C13 O28 . . . B 2 0.739 -3.649 15.141 0.5 20.42 ? C13 O28 264 A 1 HETATM 14 C C14 O28 . . . B 2 1.023 -0.482 15.534 0.5 21.36 ? C14 O28 264 A 1 HETATM 15 C C15 O28 . . . B 2 -0.174 0.141 16.169 0.5 21.08 ? C15 O28 264 A 1 HETATM 16 O O16 O28 . . . B 2 -1.075 -0.601 16.594 0.5 18.11 ? O16 O28 264 A 1 HETATM 17 N N17 O28 . . . B 2 -0.23 1.485 16.255 0.5 20.14 ? N17 O28 264 A 1 HETATM 18 C C18 O28 . . . B 2 -1.232 2.116 16.96 0.5 22.27 ? C18 O28 264 A 1 HETATM 19 S S19 O28 . . . B 2 -2.392 1.219 17.946 0.5 23.2 ? S19 O28 264 A 1 HETATM 20 C C20 O28 . . . B 2 -3.138 2.745 18.393 0.5 23.11 ? C20 O28 264 A 1 HETATM 21 C C21 O28 . . . B 2 -2.551 3.829 17.835 0.5 22.74 ? C21 O28 264 A 1 HETATM 22 C C22 O28 . . . B 2 -1.398 3.466 16.975 0.5 22.39 ? C22 O28 264 A 1 HETATM 23 C C23 O28 . . . B 2 -3.03 5.248 18.084 0.5 22.59 ? C23 O28 264 A 1 HETATM 24 C C24 O28 . . . B 2 -4.359 5.235 18.843 0.5 23.39 ? C24 O28 264 A 1 HETATM 25 C C25 O28 . . . B 2 -4.373 4.181 19.933 0.5 24.06 ? C25 O28 264 A 1 HETATM 26 C C26 O28 . . . B 2 -4.334 2.79 19.315 0.5 23.82 ? C26 O28 264 A 1 HETATM 27 C C27 O28 . . . B 2 -0.803 4.351 15.929 0.5 21.54 ? C27 O28 264 A 1 HETATM 28 O O28 O28 . . . B 2 -0.103 3.858 15.048 0.5 21.25 ? O28 O28 264 A 1 HETATM 29 N N29 O28 . . . B 2 -1.031 5.665 15.973 0.5 21.02 ? N29 O28 264 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #