data_3O28 # _model_server_result.job_id ybsFX4FbTXuNCSgiI84ozg _model_server_result.datetime_utc '2024-11-28 17:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":270}' # _entry.id 3O28 # _exptl.entry_id 3O28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O28 _cell.length_a 65.131 _cell.length_b 88.719 _cell.length_c 47.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 261 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 261 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 3O28 _atom_sites.fract_transf_matrix[1][1] 0.015354 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O28 A 1 264 1 O28 O28 . C 3 GLU A 1 265 1 GLU GLU . D 4 SO4 A 1 266 1 SO4 SO4 . E 4 SO4 A 1 267 2 SO4 SO4 . F 4 SO4 A 1 268 3 SO4 SO4 . G 5 DMS A 1 269 1 DMS DMS . H 6 GOL A 1 270 1 GOL GOL . I 6 GOL A 1 271 2 GOL GOL . J 6 GOL A 1 272 3 GOL GOL . K 6 GOL A 1 273 4 GOL GOL . L 6 GOL A 1 274 5 GOL GOL . M 6 GOL A 1 275 6 GOL GOL . N 7 HOH A 1 276 1 HOH HOH . N 7 HOH A 2 277 2 HOH HOH . N 7 HOH A 3 278 3 HOH HOH . N 7 HOH A 4 279 4 HOH HOH . N 7 HOH A 5 280 5 HOH HOH . N 7 HOH A 6 281 6 HOH HOH . N 7 HOH A 7 282 7 HOH HOH . N 7 HOH A 8 283 8 HOH HOH . N 7 HOH A 9 284 9 HOH HOH . N 7 HOH A 10 285 10 HOH HOH . N 7 HOH A 11 286 11 HOH HOH . N 7 HOH A 12 287 12 HOH HOH . N 7 HOH A 13 288 13 HOH HOH . N 7 HOH A 14 289 14 HOH HOH . N 7 HOH A 15 290 15 HOH HOH . N 7 HOH A 16 291 16 HOH HOH . N 7 HOH A 17 292 17 HOH HOH . N 7 HOH A 18 293 18 HOH HOH . N 7 HOH A 19 294 19 HOH HOH . N 7 HOH A 20 295 20 HOH HOH . N 7 HOH A 21 296 21 HOH HOH . N 7 HOH A 22 297 22 HOH HOH . N 7 HOH A 23 298 23 HOH HOH . N 7 HOH A 24 299 24 HOH HOH . N 7 HOH A 25 300 25 HOH HOH . N 7 HOH A 26 301 26 HOH HOH . N 7 HOH A 27 302 27 HOH HOH . N 7 HOH A 28 303 28 HOH HOH . N 7 HOH A 29 304 29 HOH HOH . N 7 HOH A 30 305 30 HOH HOH . N 7 HOH A 31 306 31 HOH HOH . N 7 HOH A 32 307 32 HOH HOH . N 7 HOH A 33 308 33 HOH HOH . N 7 HOH A 34 309 34 HOH HOH . N 7 HOH A 35 310 35 HOH HOH . N 7 HOH A 36 311 36 HOH HOH . N 7 HOH A 37 312 37 HOH HOH . N 7 HOH A 38 313 38 HOH HOH . N 7 HOH A 39 314 39 HOH HOH . N 7 HOH A 40 315 40 HOH HOH . N 7 HOH A 41 316 41 HOH HOH . N 7 HOH A 42 317 42 HOH HOH . N 7 HOH A 43 318 43 HOH HOH . N 7 HOH A 44 319 44 HOH HOH . N 7 HOH A 45 320 45 HOH HOH . N 7 HOH A 46 321 46 HOH HOH . N 7 HOH A 47 322 47 HOH HOH . N 7 HOH A 48 323 48 HOH HOH . N 7 HOH A 49 324 49 HOH HOH . N 7 HOH A 50 325 50 HOH HOH . N 7 HOH A 51 326 51 HOH HOH . N 7 HOH A 52 327 52 HOH HOH . N 7 HOH A 53 328 53 HOH HOH . N 7 HOH A 54 329 54 HOH HOH . N 7 HOH A 55 330 55 HOH HOH . N 7 HOH A 56 331 56 HOH HOH . N 7 HOH A 57 332 57 HOH HOH . N 7 HOH A 58 333 58 HOH HOH . N 7 HOH A 59 334 59 HOH HOH . N 7 HOH A 60 335 60 HOH HOH . N 7 HOH A 61 336 61 HOH HOH . N 7 HOH A 62 337 62 HOH HOH . N 7 HOH A 63 338 63 HOH HOH . N 7 HOH A 64 339 64 HOH HOH . N 7 HOH A 65 340 65 HOH HOH . N 7 HOH A 66 341 66 HOH HOH . N 7 HOH A 67 342 67 HOH HOH . N 7 HOH A 68 343 68 HOH HOH . N 7 HOH A 69 344 69 HOH HOH . N 7 HOH A 70 345 70 HOH HOH . N 7 HOH A 71 346 71 HOH HOH . N 7 HOH A 72 347 72 HOH HOH . N 7 HOH A 73 348 73 HOH HOH . N 7 HOH A 74 349 74 HOH HOH . N 7 HOH A 75 350 75 HOH HOH . N 7 HOH A 76 351 76 HOH HOH . N 7 HOH A 77 352 77 HOH HOH . N 7 HOH A 78 353 78 HOH HOH . N 7 HOH A 79 354 79 HOH HOH . N 7 HOH A 80 355 80 HOH HOH . N 7 HOH A 81 356 81 HOH HOH . N 7 HOH A 82 357 82 HOH HOH . N 7 HOH A 83 358 83 HOH HOH . N 7 HOH A 84 359 84 HOH HOH . N 7 HOH A 85 360 85 HOH HOH . N 7 HOH A 86 361 86 HOH HOH . N 7 HOH A 87 362 87 HOH HOH . N 7 HOH A 88 363 88 HOH HOH . N 7 HOH A 89 364 89 HOH HOH . N 7 HOH A 90 365 90 HOH HOH . N 7 HOH A 91 366 91 HOH HOH . N 7 HOH A 92 367 92 HOH HOH . N 7 HOH A 93 368 93 HOH HOH . N 7 HOH A 94 369 94 HOH HOH . N 7 HOH A 95 370 95 HOH HOH . N 7 HOH A 96 371 96 HOH HOH . N 7 HOH A 97 372 97 HOH HOH . N 7 HOH A 98 373 98 HOH HOH . N 7 HOH A 99 374 99 HOH HOH . N 7 HOH A 100 375 100 HOH HOH . N 7 HOH A 101 376 101 HOH HOH . N 7 HOH A 102 377 102 HOH HOH . N 7 HOH A 103 378 103 HOH HOH . N 7 HOH A 104 379 104 HOH HOH . N 7 HOH A 105 380 105 HOH HOH . N 7 HOH A 106 381 106 HOH HOH . N 7 HOH A 107 382 107 HOH HOH . N 7 HOH A 108 383 108 HOH HOH . N 7 HOH A 109 384 109 HOH HOH . N 7 HOH A 110 385 110 HOH HOH . N 7 HOH A 111 386 111 HOH HOH . N 7 HOH A 112 387 112 HOH HOH . N 7 HOH A 113 388 113 HOH HOH . N 7 HOH A 114 389 114 HOH HOH . N 7 HOH A 115 390 115 HOH HOH . N 7 HOH A 116 391 116 HOH HOH . N 7 HOH A 117 392 117 HOH HOH . N 7 HOH A 118 393 118 HOH HOH . N 7 HOH A 119 394 119 HOH HOH . N 7 HOH A 120 395 120 HOH HOH . N 7 HOH A 121 396 121 HOH HOH . N 7 HOH A 122 397 122 HOH HOH . N 7 HOH A 123 398 123 HOH HOH . N 7 HOH A 124 399 124 HOH HOH . N 7 HOH A 125 400 125 HOH HOH . N 7 HOH A 126 401 126 HOH HOH . N 7 HOH A 127 402 127 HOH HOH . N 7 HOH A 128 403 128 HOH HOH . N 7 HOH A 129 404 129 HOH HOH . N 7 HOH A 130 405 130 HOH HOH . N 7 HOH A 131 406 131 HOH HOH . N 7 HOH A 132 407 132 HOH HOH . N 7 HOH A 133 408 133 HOH HOH . N 7 HOH A 134 409 134 HOH HOH . N 7 HOH A 135 410 135 HOH HOH . N 7 HOH A 136 411 136 HOH HOH . N 7 HOH A 137 412 137 HOH HOH . N 7 HOH A 138 413 138 HOH HOH . N 7 HOH A 139 414 139 HOH HOH . N 7 HOH A 140 415 140 HOH HOH . N 7 HOH A 141 416 141 HOH HOH . N 7 HOH A 142 417 142 HOH HOH . N 7 HOH A 143 418 143 HOH HOH . N 7 HOH A 144 419 145 HOH HOH . N 7 HOH A 145 420 146 HOH HOH . N 7 HOH A 146 421 147 HOH HOH . N 7 HOH A 147 422 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 15.761 -3.868 21.591 1 24.48 ? C1 GOL 270 A 1 HETATM 2 O O1 GOL . . . H 6 14.818 -4.468 22.461 1 20.35 ? O1 GOL 270 A 1 HETATM 3 C C2 GOL . . . H 6 17.114 -3.795 22.306 1 27.17 ? C2 GOL 270 A 1 HETATM 4 O O2 GOL . . . H 6 16.987 -3.333 23.642 1 24.5 ? O2 GOL 270 A 1 HETATM 5 C C3 GOL . . . H 6 17.696 -5.196 22.321 1 26.93 ? C3 GOL 270 A 1 HETATM 6 O O3 GOL . . . H 6 19.077 -5.026 22.526 1 29.52 ? O3 GOL 270 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #