data_3O28
#
_model_server_result.job_id            uKqgYgZLT6zy8-4ibC9Y4A 
_model_server_result.datetime_utc      '2024-11-25 00:47:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":272}' 
#
_entry.id    3O28 
#
_exptl.entry_id    3O28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3O28 
_cell.length_a            65.131 
_cell.length_b            88.719 
_cell.length_c            47.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             206 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              206 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             261 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              261 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.063 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     3O28 
_atom_sites.fract_transf_matrix[1][1]    0.015354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O28 A 1 264 1 O28 O28 . 
C 3 GLU A 1 265 1 GLU GLU . 
D 4 SO4 A 1 266 1 SO4 SO4 . 
E 4 SO4 A 1 267 2 SO4 SO4 . 
F 4 SO4 A 1 268 3 SO4 SO4 . 
G 5 DMS A 1 269 1 DMS DMS . 
H 6 GOL A 1 270 1 GOL GOL . 
I 6 GOL A 1 271 2 GOL GOL . 
J 6 GOL A 1 272 3 GOL GOL . 
K 6 GOL A 1 273 4 GOL GOL . 
L 6 GOL A 1 274 5 GOL GOL . 
M 6 GOL A 1 275 6 GOL GOL . 
N 7 HOH A 1 276 1 HOH HOH . 
N 7 HOH A 2 277 2 HOH HOH . 
N 7 HOH A 3 278 3 HOH HOH . 
N 7 HOH A 4 279 4 HOH HOH . 
N 7 HOH A 5 280 5 HOH HOH . 
N 7 HOH A 6 281 6 HOH HOH . 
N 7 HOH A 7 282 7 HOH HOH . 
N 7 HOH A 8 283 8 HOH HOH . 
N 7 HOH A 9 284 9 HOH HOH . 
N 7 HOH A 10 285 10 HOH HOH . 
N 7 HOH A 11 286 11 HOH HOH . 
N 7 HOH A 12 287 12 HOH HOH . 
N 7 HOH A 13 288 13 HOH HOH . 
N 7 HOH A 14 289 14 HOH HOH . 
N 7 HOH A 15 290 15 HOH HOH . 
N 7 HOH A 16 291 16 HOH HOH . 
N 7 HOH A 17 292 17 HOH HOH . 
N 7 HOH A 18 293 18 HOH HOH . 
N 7 HOH A 19 294 19 HOH HOH . 
N 7 HOH A 20 295 20 HOH HOH . 
N 7 HOH A 21 296 21 HOH HOH . 
N 7 HOH A 22 297 22 HOH HOH . 
N 7 HOH A 23 298 23 HOH HOH . 
N 7 HOH A 24 299 24 HOH HOH . 
N 7 HOH A 25 300 25 HOH HOH . 
N 7 HOH A 26 301 26 HOH HOH . 
N 7 HOH A 27 302 27 HOH HOH . 
N 7 HOH A 28 303 28 HOH HOH . 
N 7 HOH A 29 304 29 HOH HOH . 
N 7 HOH A 30 305 30 HOH HOH . 
N 7 HOH A 31 306 31 HOH HOH . 
N 7 HOH A 32 307 32 HOH HOH . 
N 7 HOH A 33 308 33 HOH HOH . 
N 7 HOH A 34 309 34 HOH HOH . 
N 7 HOH A 35 310 35 HOH HOH . 
N 7 HOH A 36 311 36 HOH HOH . 
N 7 HOH A 37 312 37 HOH HOH . 
N 7 HOH A 38 313 38 HOH HOH . 
N 7 HOH A 39 314 39 HOH HOH . 
N 7 HOH A 40 315 40 HOH HOH . 
N 7 HOH A 41 316 41 HOH HOH . 
N 7 HOH A 42 317 42 HOH HOH . 
N 7 HOH A 43 318 43 HOH HOH . 
N 7 HOH A 44 319 44 HOH HOH . 
N 7 HOH A 45 320 45 HOH HOH . 
N 7 HOH A 46 321 46 HOH HOH . 
N 7 HOH A 47 322 47 HOH HOH . 
N 7 HOH A 48 323 48 HOH HOH . 
N 7 HOH A 49 324 49 HOH HOH . 
N 7 HOH A 50 325 50 HOH HOH . 
N 7 HOH A 51 326 51 HOH HOH . 
N 7 HOH A 52 327 52 HOH HOH . 
N 7 HOH A 53 328 53 HOH HOH . 
N 7 HOH A 54 329 54 HOH HOH . 
N 7 HOH A 55 330 55 HOH HOH . 
N 7 HOH A 56 331 56 HOH HOH . 
N 7 HOH A 57 332 57 HOH HOH . 
N 7 HOH A 58 333 58 HOH HOH . 
N 7 HOH A 59 334 59 HOH HOH . 
N 7 HOH A 60 335 60 HOH HOH . 
N 7 HOH A 61 336 61 HOH HOH . 
N 7 HOH A 62 337 62 HOH HOH . 
N 7 HOH A 63 338 63 HOH HOH . 
N 7 HOH A 64 339 64 HOH HOH . 
N 7 HOH A 65 340 65 HOH HOH . 
N 7 HOH A 66 341 66 HOH HOH . 
N 7 HOH A 67 342 67 HOH HOH . 
N 7 HOH A 68 343 68 HOH HOH . 
N 7 HOH A 69 344 69 HOH HOH . 
N 7 HOH A 70 345 70 HOH HOH . 
N 7 HOH A 71 346 71 HOH HOH . 
N 7 HOH A 72 347 72 HOH HOH . 
N 7 HOH A 73 348 73 HOH HOH . 
N 7 HOH A 74 349 74 HOH HOH . 
N 7 HOH A 75 350 75 HOH HOH . 
N 7 HOH A 76 351 76 HOH HOH . 
N 7 HOH A 77 352 77 HOH HOH . 
N 7 HOH A 78 353 78 HOH HOH . 
N 7 HOH A 79 354 79 HOH HOH . 
N 7 HOH A 80 355 80 HOH HOH . 
N 7 HOH A 81 356 81 HOH HOH . 
N 7 HOH A 82 357 82 HOH HOH . 
N 7 HOH A 83 358 83 HOH HOH . 
N 7 HOH A 84 359 84 HOH HOH . 
N 7 HOH A 85 360 85 HOH HOH . 
N 7 HOH A 86 361 86 HOH HOH . 
N 7 HOH A 87 362 87 HOH HOH . 
N 7 HOH A 88 363 88 HOH HOH . 
N 7 HOH A 89 364 89 HOH HOH . 
N 7 HOH A 90 365 90 HOH HOH . 
N 7 HOH A 91 366 91 HOH HOH . 
N 7 HOH A 92 367 92 HOH HOH . 
N 7 HOH A 93 368 93 HOH HOH . 
N 7 HOH A 94 369 94 HOH HOH . 
N 7 HOH A 95 370 95 HOH HOH . 
N 7 HOH A 96 371 96 HOH HOH . 
N 7 HOH A 97 372 97 HOH HOH . 
N 7 HOH A 98 373 98 HOH HOH . 
N 7 HOH A 99 374 99 HOH HOH . 
N 7 HOH A 100 375 100 HOH HOH . 
N 7 HOH A 101 376 101 HOH HOH . 
N 7 HOH A 102 377 102 HOH HOH . 
N 7 HOH A 103 378 103 HOH HOH . 
N 7 HOH A 104 379 104 HOH HOH . 
N 7 HOH A 105 380 105 HOH HOH . 
N 7 HOH A 106 381 106 HOH HOH . 
N 7 HOH A 107 382 107 HOH HOH . 
N 7 HOH A 108 383 108 HOH HOH . 
N 7 HOH A 109 384 109 HOH HOH . 
N 7 HOH A 110 385 110 HOH HOH . 
N 7 HOH A 111 386 111 HOH HOH . 
N 7 HOH A 112 387 112 HOH HOH . 
N 7 HOH A 113 388 113 HOH HOH . 
N 7 HOH A 114 389 114 HOH HOH . 
N 7 HOH A 115 390 115 HOH HOH . 
N 7 HOH A 116 391 116 HOH HOH . 
N 7 HOH A 117 392 117 HOH HOH . 
N 7 HOH A 118 393 118 HOH HOH . 
N 7 HOH A 119 394 119 HOH HOH . 
N 7 HOH A 120 395 120 HOH HOH . 
N 7 HOH A 121 396 121 HOH HOH . 
N 7 HOH A 122 397 122 HOH HOH . 
N 7 HOH A 123 398 123 HOH HOH . 
N 7 HOH A 124 399 124 HOH HOH . 
N 7 HOH A 125 400 125 HOH HOH . 
N 7 HOH A 126 401 126 HOH HOH . 
N 7 HOH A 127 402 127 HOH HOH . 
N 7 HOH A 128 403 128 HOH HOH . 
N 7 HOH A 129 404 129 HOH HOH . 
N 7 HOH A 130 405 130 HOH HOH . 
N 7 HOH A 131 406 131 HOH HOH . 
N 7 HOH A 132 407 132 HOH HOH . 
N 7 HOH A 133 408 133 HOH HOH . 
N 7 HOH A 134 409 134 HOH HOH . 
N 7 HOH A 135 410 135 HOH HOH . 
N 7 HOH A 136 411 136 HOH HOH . 
N 7 HOH A 137 412 137 HOH HOH . 
N 7 HOH A 138 413 138 HOH HOH . 
N 7 HOH A 139 414 139 HOH HOH . 
N 7 HOH A 140 415 140 HOH HOH . 
N 7 HOH A 141 416 141 HOH HOH . 
N 7 HOH A 142 417 142 HOH HOH . 
N 7 HOH A 143 418 143 HOH HOH . 
N 7 HOH A 144 419 145 HOH HOH . 
N 7 HOH A 145 420 146 HOH HOH . 
N 7 HOH A 146 421 147 HOH HOH . 
N 7 HOH A 147 422 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 6 24.682 -15.337 17.234 1 49.9 ? C1 GOL 272 A 1 
HETATM 2 O O1 GOL . . . J 6 23.329 -15.721 17.166 1 52.16 ? O1 GOL 272 A 1 
HETATM 3 C C2 GOL . . . J 6 24.795 -14.062 18.04 1 49.77 ? C2 GOL 272 A 1 
HETATM 4 O O2 GOL . . . J 6 24.948 -14.393 19.392 1 50.86 ? O2 GOL 272 A 1 
HETATM 5 C C3 GOL . . . J 6 26.025 -13.291 17.615 1 50.22 ? C3 GOL 272 A 1 
HETATM 6 O O3 GOL . . . J 6 26.152 -12.231 18.527 1 52.78 ? O3 GOL 272 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#