data_3O2F # _model_server_result.job_id tbUA0R6zIHdHhJ8wE2MC_g _model_server_result.datetime_utc '2024-11-12 19:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1}' # _entry.id 3O2F # _exptl.entry_id 3O2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.442 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(2,4-dimethylphenyl)sulfanyl]-3-pent-4-yn-1-yl-3H-purin-6-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.13 _cell.angle_gamma 90 _cell.entry_id 3O2F _cell.length_a 60.96 _cell.length_b 65.686 _cell.length_c 85.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C18 H19 N5 S' _chem_comp.formula_weight 337.442 _chem_comp.id P54 _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(2,4-dimethylphenyl)sulfanyl]-3-pent-4-yn-1-yl-3H-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 P54 doub 261 n y C1 C2 P54 sing 262 n y C2 N4 P54 sing 263 n y C3 N5 P54 sing 264 n y N4 C6 P54 sing 265 n y N4 C12 P54 sing 266 n n N5 C6 P54 doub 267 n y C6 H6 P54 sing 268 n n N7 C1 P54 sing 269 n y N7 C8 P54 doub 270 n y C8 N9 P54 sing 271 n y N9 C2 P54 doub 272 n y S10 C8 P54 sing 273 n n S10 C17 P54 sing 274 n n N11 C3 P54 sing 275 n n N11 HN11 P54 sing 276 n n N11 HN1A P54 sing 277 n n C12 H12 P54 sing 278 n n C12 H12A P54 sing 279 n n C13 C12 P54 sing 280 n n C13 H13 P54 sing 281 n n C13 H13A P54 sing 282 n n C14 C13 P54 sing 283 n n C14 H14 P54 sing 284 n n C14 H14A P54 sing 285 n n C15 C14 P54 sing 286 n n C16 C15 P54 trip 287 n n C16 H16 P54 sing 288 n n C17 C21 P54 doub 289 n y C17 C18 P54 sing 290 n y C18 C19 P54 doub 291 n y C18 H18 P54 sing 292 n n C19 C20 P54 sing 293 n y C19 H19 P54 sing 294 n n C20 C24 P54 sing 295 n n C21 C22 P54 sing 296 n y C22 C20 P54 doub 297 n y C22 H22 P54 sing 298 n n C23 C21 P54 sing 299 n n C23 H23 P54 sing 300 n n C23 H23A P54 sing 301 n n C23 H23B P54 sing 302 n n C24 H24 P54 sing 303 n n C24 H24A P54 sing 304 n n C24 H24B P54 sing 305 n n # _atom_sites.entry_id 3O2F _atom_sites.fract_transf_matrix[1][1] 0.016404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002343 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P54 A 1 1 1 P54 P54 . D 3 IPA A 1 338 1 IPA IPA . E 3 IPA A 1 2 2 IPA IPA . F 4 GOL A 1 3 3 GOL GOL . G 3 IPA A 1 4 4 IPA IPA . H 3 IPA A 1 5 5 IPA IPA . I 2 P54 B 1 1 1 P54 P54 . J 5 HOH A 1 7 7 HOH HOH . J 5 HOH A 2 8 8 HOH HOH . J 5 HOH A 3 9 9 HOH HOH . J 5 HOH A 4 10 10 HOH HOH . J 5 HOH A 5 11 11 HOH HOH . J 5 HOH A 6 12 12 HOH HOH . J 5 HOH A 7 14 14 HOH HOH . J 5 HOH A 8 15 15 HOH HOH . J 5 HOH A 9 16 16 HOH HOH . J 5 HOH A 10 17 17 HOH HOH . J 5 HOH A 11 18 18 HOH HOH . J 5 HOH A 12 19 19 HOH HOH . J 5 HOH A 13 20 20 HOH HOH . J 5 HOH A 14 21 21 HOH HOH . J 5 HOH A 15 22 22 HOH HOH . J 5 HOH A 16 23 23 HOH HOH . J 5 HOH A 17 24 24 HOH HOH . J 5 HOH A 18 27 27 HOH HOH . J 5 HOH A 19 28 28 HOH HOH . J 5 HOH A 20 29 29 HOH HOH . J 5 HOH A 21 30 30 HOH HOH . J 5 HOH A 22 31 31 HOH HOH . J 5 HOH A 23 32 32 HOH HOH . J 5 HOH A 24 34 34 HOH HOH . J 5 HOH A 25 35 35 HOH HOH . J 5 HOH A 26 36 36 HOH HOH . J 5 HOH A 27 37 37 HOH HOH . J 5 HOH A 28 38 38 HOH HOH . J 5 HOH A 29 39 39 HOH HOH . J 5 HOH A 30 40 40 HOH HOH . J 5 HOH A 31 41 41 HOH HOH . J 5 HOH A 32 42 42 HOH HOH . J 5 HOH A 33 43 43 HOH HOH . J 5 HOH A 34 45 45 HOH HOH . J 5 HOH A 35 46 46 HOH HOH . J 5 HOH A 36 47 47 HOH HOH . J 5 HOH A 37 48 48 HOH HOH . J 5 HOH A 38 49 49 HOH HOH . J 5 HOH A 39 50 50 HOH HOH . J 5 HOH A 40 52 52 HOH HOH . J 5 HOH A 41 53 53 HOH HOH . J 5 HOH A 42 54 54 HOH HOH . J 5 HOH A 43 55 55 HOH HOH . J 5 HOH A 44 56 56 HOH HOH . J 5 HOH A 45 58 58 HOH HOH . J 5 HOH A 46 59 59 HOH HOH . J 5 HOH A 47 62 62 HOH HOH . J 5 HOH A 48 63 63 HOH HOH . J 5 HOH A 49 64 64 HOH HOH . J 5 HOH A 50 339 1 HOH HOH . J 5 HOH A 51 340 2 HOH HOH . J 5 HOH A 52 341 3 HOH HOH . J 5 HOH A 53 342 4 HOH HOH . J 5 HOH A 54 343 5 HOH HOH . J 5 HOH A 55 344 65 HOH HOH . J 5 HOH A 56 345 67 HOH HOH . J 5 HOH A 57 346 68 HOH HOH . J 5 HOH A 58 347 69 HOH HOH . J 5 HOH A 59 348 70 HOH HOH . J 5 HOH A 60 349 71 HOH HOH . J 5 HOH A 61 350 72 HOH HOH . J 5 HOH A 62 351 73 HOH HOH . J 5 HOH A 63 352 74 HOH HOH . J 5 HOH A 64 353 75 HOH HOH . J 5 HOH A 65 354 77 HOH HOH . J 5 HOH A 66 355 78 HOH HOH . J 5 HOH A 67 356 79 HOH HOH . J 5 HOH A 68 357 80 HOH HOH . J 5 HOH A 69 358 81 HOH HOH . J 5 HOH A 70 359 82 HOH HOH . J 5 HOH A 71 360 85 HOH HOH . J 5 HOH A 72 361 86 HOH HOH . J 5 HOH A 73 362 87 HOH HOH . J 5 HOH A 74 363 88 HOH HOH . J 5 HOH A 75 364 89 HOH HOH . J 5 HOH A 76 365 90 HOH HOH . J 5 HOH A 77 366 91 HOH HOH . J 5 HOH A 78 367 92 HOH HOH . J 5 HOH A 79 368 94 HOH HOH . J 5 HOH A 80 369 95 HOH HOH . J 5 HOH A 81 370 96 HOH HOH . J 5 HOH A 82 371 98 HOH HOH . J 5 HOH A 83 372 99 HOH HOH . J 5 HOH A 84 373 103 HOH HOH . J 5 HOH A 85 374 104 HOH HOH . J 5 HOH A 86 375 105 HOH HOH . J 5 HOH A 87 376 108 HOH HOH . J 5 HOH A 88 377 109 HOH HOH . J 5 HOH A 89 378 110 HOH HOH . J 5 HOH A 90 379 111 HOH HOH . J 5 HOH A 91 380 113 HOH HOH . J 5 HOH A 92 381 115 HOH HOH . J 5 HOH A 93 382 116 HOH HOH . J 5 HOH A 94 383 117 HOH HOH . J 5 HOH A 95 384 120 HOH HOH . J 5 HOH A 96 385 121 HOH HOH . J 5 HOH A 97 386 122 HOH HOH . J 5 HOH A 98 387 123 HOH HOH . J 5 HOH A 99 388 124 HOH HOH . J 5 HOH A 100 389 126 HOH HOH . J 5 HOH A 101 390 127 HOH HOH . J 5 HOH A 102 391 128 HOH HOH . J 5 HOH A 103 392 130 HOH HOH . J 5 HOH A 104 393 131 HOH HOH . J 5 HOH A 105 394 132 HOH HOH . J 5 HOH A 106 395 133 HOH HOH . J 5 HOH A 107 396 134 HOH HOH . J 5 HOH A 108 397 139 HOH HOH . J 5 HOH A 109 398 140 HOH HOH . J 5 HOH A 110 399 142 HOH HOH . J 5 HOH A 111 400 146 HOH HOH . J 5 HOH A 112 401 147 HOH HOH . J 5 HOH A 113 402 148 HOH HOH . J 5 HOH A 114 403 150 HOH HOH . J 5 HOH A 115 404 151 HOH HOH . J 5 HOH A 116 405 153 HOH HOH . J 5 HOH A 117 406 154 HOH HOH . J 5 HOH A 118 407 155 HOH HOH . J 5 HOH A 119 408 160 HOH HOH . J 5 HOH A 120 409 162 HOH HOH . J 5 HOH A 121 410 163 HOH HOH . J 5 HOH A 122 411 164 HOH HOH . J 5 HOH A 123 412 165 HOH HOH . J 5 HOH A 124 413 166 HOH HOH . J 5 HOH A 125 414 167 HOH HOH . J 5 HOH A 126 415 170 HOH HOH . J 5 HOH A 127 416 171 HOH HOH . J 5 HOH A 128 417 172 HOH HOH . J 5 HOH A 129 418 175 HOH HOH . J 5 HOH A 130 419 176 HOH HOH . J 5 HOH A 131 420 178 HOH HOH . J 5 HOH A 132 421 180 HOH HOH . J 5 HOH A 133 422 182 HOH HOH . J 5 HOH A 134 423 183 HOH HOH . J 5 HOH A 135 424 189 HOH HOH . J 5 HOH A 136 425 191 HOH HOH . J 5 HOH A 137 426 192 HOH HOH . J 5 HOH A 138 427 193 HOH HOH . J 5 HOH A 139 428 197 HOH HOH . J 5 HOH A 140 429 198 HOH HOH . J 5 HOH A 141 430 199 HOH HOH . J 5 HOH A 142 431 200 HOH HOH . J 5 HOH A 143 432 201 HOH HOH . J 5 HOH A 144 433 202 HOH HOH . J 5 HOH A 145 434 204 HOH HOH . J 5 HOH A 146 435 205 HOH HOH . J 5 HOH A 147 436 206 HOH HOH . J 5 HOH A 148 437 207 HOH HOH . J 5 HOH A 149 438 208 HOH HOH . J 5 HOH A 150 439 210 HOH HOH . J 5 HOH A 151 440 211 HOH HOH . J 5 HOH A 152 441 215 HOH HOH . K 5 HOH B 1 6 6 HOH HOH . K 5 HOH B 2 13 13 HOH HOH . K 5 HOH B 3 25 25 HOH HOH . K 5 HOH B 4 26 26 HOH HOH . K 5 HOH B 5 33 33 HOH HOH . K 5 HOH B 6 44 44 HOH HOH . K 5 HOH B 7 51 51 HOH HOH . K 5 HOH B 8 57 57 HOH HOH . K 5 HOH B 9 60 60 HOH HOH . K 5 HOH B 10 61 61 HOH HOH . K 5 HOH B 11 338 66 HOH HOH . K 5 HOH B 12 339 76 HOH HOH . K 5 HOH B 13 340 83 HOH HOH . K 5 HOH B 14 341 84 HOH HOH . K 5 HOH B 15 342 93 HOH HOH . K 5 HOH B 16 343 97 HOH HOH . K 5 HOH B 17 344 100 HOH HOH . K 5 HOH B 18 345 101 HOH HOH . K 5 HOH B 19 346 102 HOH HOH . K 5 HOH B 20 347 106 HOH HOH . K 5 HOH B 21 348 107 HOH HOH . K 5 HOH B 22 349 112 HOH HOH . K 5 HOH B 23 350 114 HOH HOH . K 5 HOH B 24 351 118 HOH HOH . K 5 HOH B 25 352 119 HOH HOH . K 5 HOH B 26 353 125 HOH HOH . K 5 HOH B 27 354 129 HOH HOH . K 5 HOH B 28 355 135 HOH HOH . K 5 HOH B 29 356 136 HOH HOH . K 5 HOH B 30 357 137 HOH HOH . K 5 HOH B 31 358 138 HOH HOH . K 5 HOH B 32 359 141 HOH HOH . K 5 HOH B 33 360 143 HOH HOH . K 5 HOH B 34 361 144 HOH HOH . K 5 HOH B 35 362 145 HOH HOH . K 5 HOH B 36 363 149 HOH HOH . K 5 HOH B 37 364 152 HOH HOH . K 5 HOH B 38 365 156 HOH HOH . K 5 HOH B 39 366 157 HOH HOH . K 5 HOH B 40 367 158 HOH HOH . K 5 HOH B 41 368 159 HOH HOH . K 5 HOH B 42 369 161 HOH HOH . K 5 HOH B 43 370 168 HOH HOH . K 5 HOH B 44 371 169 HOH HOH . K 5 HOH B 45 372 173 HOH HOH . K 5 HOH B 46 373 174 HOH HOH . K 5 HOH B 47 374 177 HOH HOH . K 5 HOH B 48 375 179 HOH HOH . K 5 HOH B 49 376 181 HOH HOH . K 5 HOH B 50 377 184 HOH HOH . K 5 HOH B 51 378 185 HOH HOH . K 5 HOH B 52 379 186 HOH HOH . K 5 HOH B 53 380 187 HOH HOH . K 5 HOH B 54 381 188 HOH HOH . K 5 HOH B 55 382 190 HOH HOH . K 5 HOH B 56 383 194 HOH HOH . K 5 HOH B 57 384 195 HOH HOH . K 5 HOH B 58 385 196 HOH HOH . K 5 HOH B 59 386 203 HOH HOH . K 5 HOH B 60 387 209 HOH HOH . K 5 HOH B 61 388 212 HOH HOH . K 5 HOH B 62 389 213 HOH HOH . K 5 HOH B 63 390 214 HOH HOH . K 5 HOH B 64 391 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P54 . . . I 2 23.664 28.182 35.339 1 26.58 ? C1 P54 1 B 1 HETATM 2 C C2 P54 . . . I 2 24.994 27.799 35.354 1 29.34 ? C2 P54 1 B 1 HETATM 3 C C3 P54 . . . I 2 23.001 28.132 36.555 1 33.37 ? C3 P54 1 B 1 HETATM 4 N N4 P54 . . . I 2 25.636 27.359 36.471 1 30.22 ? N4 P54 1 B 1 HETATM 5 N N5 P54 . . . I 2 23.672 27.705 37.659 1 28.87 ? N5 P54 1 B 1 HETATM 6 C C6 P54 . . . I 2 24.949 27.313 37.61 1 30.1 ? C6 P54 1 B 1 HETATM 7 N N7 P54 . . . I 2 23.335 28.568 34.066 1 32.85 ? N7 P54 1 B 1 HETATM 8 C C8 P54 . . . I 2 24.499 28.389 33.377 1 30.77 ? C8 P54 1 B 1 HETATM 9 N N9 P54 . . . I 2 25.539 27.931 34.11 1 31.49 ? N9 P54 1 B 1 HETATM 10 S S10 P54 . . . I 2 24.712 28.762 31.671 1 37.91 ? S10 P54 1 B 1 HETATM 11 N N11 P54 . . . I 2 21.68 28.48 36.664 1 32.36 ? N11 P54 1 B 1 HETATM 12 C C12 P54 . . . I 2 27.055 26.925 36.457 1 32.05 ? C12 P54 1 B 1 HETATM 13 C C13 P54 . . . I 2 27.181 25.505 35.838 1 39.27 ? C13 P54 1 B 1 HETATM 14 C C14 P54 . . . I 2 26.31 24.493 36.554 1 37.1 ? C14 P54 1 B 1 HETATM 15 C C15 P54 . . . I 2 25.07 24.369 36.368 1 37.98 ? C15 P54 1 B 1 HETATM 16 C C16 P54 . . . I 2 23.774 24.307 36.277 1 36.5 ? C16 P54 1 B 1 HETATM 17 C C17 P54 . . . I 2 23.652 30.012 31.165 1 35.13 ? C17 P54 1 B 1 HETATM 18 C C18 P54 . . . I 2 22.723 29.703 30.161 1 37.92 ? C18 P54 1 B 1 HETATM 19 C C19 P54 . . . I 2 21.826 30.671 29.678 1 35.54 ? C19 P54 1 B 1 HETATM 20 C C20 P54 . . . I 2 21.886 31.97 30.172 1 36.05 ? C20 P54 1 B 1 HETATM 21 C C21 P54 . . . I 2 23.703 31.326 31.659 1 37.49 ? C21 P54 1 B 1 HETATM 22 C C22 P54 . . . I 2 22.817 32.304 31.176 1 35.94 ? C22 P54 1 B 1 HETATM 23 C C23 P54 . . . I 2 24.691 31.729 32.737 1 37.55 ? C23 P54 1 B 1 HETATM 24 C C24 P54 . . . I 2 20.927 33.014 29.668 1 33.92 ? C24 P54 1 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #