data_3O2K # _model_server_result.job_id xn6CDbkBorcgOYURdkgorA _model_server_result.datetime_utc '2024-10-18 16:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3O2K # _exptl.entry_id 3O2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.325 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O2K _cell.length_a 82.77 _cell.length_b 82.77 _cell.length_c 124.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 N3 O2' _chem_comp.formula_weight 283.325 _chem_comp.id QRP _chem_comp.mon_nstd_flag . _chem_comp.name (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Brevianamide F;cyclo-L-Trp-L-Pro' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C QRP doub 327 n n C CA QRP sing 328 n n C NAU QRP sing 329 n n CA N QRP sing 330 n n N CAN QRP sing 331 n n N HN QRP sing 332 n n CB CA QRP sing 333 n n CA HA QRP sing 334 n n CB CG QRP sing 335 n n CB HB QRP sing 336 n n CB HBA QRP sing 337 n n CD2 CG QRP sing 338 n y CG CD1 QRP doub 339 n y CAN OAA QRP doub 340 n n CAJ CAH QRP sing 341 n n CAH CAI QRP sing 342 n n CAH HAH QRP sing 343 n n CAH HAHA QRP sing 344 n n CAT CAI QRP sing 345 n n CAI HAI QRP sing 346 n n CAI HAIA QRP sing 347 n n NAU CAJ QRP sing 348 n n CAJ HAJ QRP sing 349 n n CAJ HAJA QRP sing 350 n n CAT CAN QRP sing 351 n n NAU CAT QRP sing 352 n n CAT HAT QRP sing 353 n n NE1 CD1 QRP sing 354 n y CD1 HD1 QRP sing 355 n n CE3 CD2 QRP doub 356 n y CD2 CE2 QRP sing 357 n y CE2 NE1 QRP sing 358 n y CZ2 CE2 QRP doub 359 n y CZ3 CE3 QRP sing 360 n y CE3 HE3 QRP sing 361 n n CZ3 CH2 QRP doub 362 n y CH2 CZ2 QRP sing 363 n y CH2 HH2 QRP sing 364 n n CZ2 HZ2 QRP sing 365 n n CZ3 HZ3 QRP sing 366 n n NE1 HNE1 QRP sing 367 n n # _atom_sites.entry_id 3O2K _atom_sites.fract_transf_matrix[1][1] 0.012082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DST A 1 501 501 DST DST . C 3 QRP A 1 502 502 QRP QRP . D 4 MES A 1 475 1 MES MES . E 5 CL A 1 476 2 CL CL . F 5 CL A 1 477 5 CL CL . G 6 HOH A 1 478 1 HOH HOH . G 6 HOH A 2 479 2 HOH HOH . G 6 HOH A 3 480 3 HOH HOH . G 6 HOH A 4 481 5 HOH HOH . G 6 HOH A 5 482 6 HOH HOH . G 6 HOH A 6 483 7 HOH HOH . G 6 HOH A 7 484 8 HOH HOH . G 6 HOH A 8 485 9 HOH HOH . G 6 HOH A 9 486 10 HOH HOH . G 6 HOH A 10 487 11 HOH HOH . G 6 HOH A 11 488 12 HOH HOH . G 6 HOH A 12 489 14 HOH HOH . G 6 HOH A 13 490 15 HOH HOH . G 6 HOH A 14 491 16 HOH HOH . G 6 HOH A 15 492 17 HOH HOH . G 6 HOH A 16 493 18 HOH HOH . G 6 HOH A 17 494 19 HOH HOH . G 6 HOH A 18 495 21 HOH HOH . G 6 HOH A 19 496 22 HOH HOH . G 6 HOH A 20 497 23 HOH HOH . G 6 HOH A 21 498 25 HOH HOH . G 6 HOH A 22 499 26 HOH HOH . G 6 HOH A 23 500 27 HOH HOH . G 6 HOH A 24 503 28 HOH HOH . G 6 HOH A 25 504 29 HOH HOH . G 6 HOH A 26 505 30 HOH HOH . G 6 HOH A 27 506 31 HOH HOH . G 6 HOH A 28 507 32 HOH HOH . G 6 HOH A 29 508 33 HOH HOH . G 6 HOH A 30 509 34 HOH HOH . G 6 HOH A 31 510 35 HOH HOH . G 6 HOH A 32 511 37 HOH HOH . G 6 HOH A 33 512 38 HOH HOH . G 6 HOH A 34 513 39 HOH HOH . G 6 HOH A 35 514 40 HOH HOH . G 6 HOH A 36 515 41 HOH HOH . G 6 HOH A 37 516 43 HOH HOH . G 6 HOH A 38 517 45 HOH HOH . G 6 HOH A 39 518 50 HOH HOH . G 6 HOH A 40 519 52 HOH HOH . G 6 HOH A 41 520 53 HOH HOH . G 6 HOH A 42 521 54 HOH HOH . G 6 HOH A 43 522 61 HOH HOH . G 6 HOH A 44 523 62 HOH HOH . G 6 HOH A 45 524 63 HOH HOH . G 6 HOH A 46 525 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C QRP . . . C 3 -19.591 24.125 2.972 1 56.73 ? C QRP 502 A 1 HETATM 2 N N QRP . . . C 3 -19.022 22.271 4.431 1 56.55 ? N QRP 502 A 1 HETATM 3 O O QRP . . . C 3 -19.871 24.615 1.907 1 56.94 ? O QRP 502 A 1 HETATM 4 C CA QRP . . . C 3 -19.211 22.728 3.065 1 56.08 ? CA QRP 502 A 1 HETATM 5 C CB QRP . . . C 3 -20.031 21.762 2.214 1 55.73 ? CB QRP 502 A 1 HETATM 6 C CG QRP . . . C 3 -19.507 20.313 2.304 1 54.4 ? CG QRP 502 A 1 HETATM 7 O OAA QRP . . . C 3 -18.481 22.806 6.64 1 57.84 ? OAA QRP 502 A 1 HETATM 8 C CAH QRP . . . C 3 -20.717 26.333 5.679 1 57.55 ? CAH QRP 502 A 1 HETATM 9 C CAI QRP . . . C 3 -19.885 25.241 6.4 1 57.32 ? CAI QRP 502 A 1 HETATM 10 C CAJ QRP . . . C 3 -20.351 26.204 4.274 1 56.9 ? CAJ QRP 502 A 1 HETATM 11 C CAN QRP . . . C 3 -18.837 23.222 5.565 1 56.49 ? CAN QRP 502 A 1 HETATM 12 C CAT QRP . . . C 3 -19.07 24.629 5.375 1 57.14 ? CAT QRP 502 A 1 HETATM 13 N NAU QRP . . . C 3 -19.772 24.876 4.163 1 56.79 ? NAU QRP 502 A 1 HETATM 14 C CD1 QRP . . . C 3 -19.841 19.373 3.289 1 54.26 ? CD1 QRP 502 A 1 HETATM 15 C CD2 QRP . . . C 3 -18.501 19.616 1.294 1 53.61 ? CD2 QRP 502 A 1 HETATM 16 N NE1 QRP . . . C 3 -19.094 18.079 2.981 1 53.74 ? NE1 QRP 502 A 1 HETATM 17 C CE2 QRP . . . C 3 -18.285 18.289 1.738 1 53.09 ? CE2 QRP 502 A 1 HETATM 18 C CE3 QRP . . . C 3 -17.777 20.131 0.002 1 53.67 ? CE3 QRP 502 A 1 HETATM 19 C CH2 QRP . . . C 3 -16.721 17.941 -0.235 1 53.06 ? CH2 QRP 502 A 1 HETATM 20 C CZ2 QRP . . . C 3 -17.426 17.437 1.023 1 53.6 ? CZ2 QRP 502 A 1 HETATM 21 C CZ3 QRP . . . C 3 -16.949 19.312 -0.69 1 53.26 ? CZ3 QRP 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #