data_3O2V # _model_server_result.job_id iwKylY3MRgCUE_W5K75UMQ _model_server_result.datetime_utc '2025-07-16 20:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":215}' # _entry.id 3O2V # _exptl.entry_id 3O2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O2V _cell.length_a 128.73 _cell.length_b 128.73 _cell.length_c 92.342 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 202 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 B C GLY 139 H GLY 133 1_555 B N GLY 140 H GLY 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 B C VAL 158 H VAL 154 1_555 B N SER 159 H SER 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C TRP 160 H TRP 157 1_555 B N ASN 161 H ASN 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C GLY 168 H GLY 169 1_555 B N VAL 169 H VAL 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 B C SER 179 H SER 181 1_555 B N GLY 180 H GLY 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 B C SER 193 H SER 196 1_555 B N SER 194 H SER 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C LEU 195 H LEU 200 1_555 B N GLY 196 H GLY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C VAL 217 H VAL 223 1_555 B N GLU 218 H GLU 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 355 n n C C2 TRS sing 356 n n C C3 TRS sing 357 n n C N TRS sing 358 n n C1 O1 TRS sing 359 n n C1 H11 TRS sing 360 n n C1 H12 TRS sing 361 n n C2 O2 TRS sing 362 n n C2 H21 TRS sing 363 n n C2 H22 TRS sing 364 n n C3 O3 TRS sing 365 n n C3 H31 TRS sing 366 n n C3 H32 TRS sing 367 n n N HN1 TRS sing 368 n n N HN2 TRS sing 369 n n N HN3 TRS sing 370 n n O1 HO1 TRS sing 371 n n O2 HO2 TRS sing 372 n n O3 HO3 TRS sing 373 n n # _atom_sites.entry_id 3O2V _atom_sites.fract_transf_matrix[1][1] 0.007768 _atom_sites.fract_transf_matrix[1][2] 0.004485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TRS L 1 215 1 TRS TMN . D 3 TRS L 1 216 2 TRS TMN . E 3 TRS L 1 217 4 TRS TMN . F 3 TRS L 1 218 6 TRS TMN . G 3 TRS L 1 219 9 TRS TMN . H 3 TRS L 1 220 10 TRS TMN . I 4 FLC L 1 221 2 FLC FLC . J 5 SO4 L 1 222 4 SO4 SO4 . K 5 SO4 L 1 223 5 SO4 SO4 . L 5 SO4 L 1 224 6 SO4 SO4 . M 5 SO4 L 1 225 9 SO4 SO4 . N 5 SO4 L 1 226 10 SO4 SO4 . O 5 SO4 L 1 227 11 SO4 SO4 . P 5 SO4 L 1 228 12 SO4 SO4 . Q 3 TRS H 1 236 3 TRS TMN . R 3 TRS H 1 237 5 TRS TMN . S 3 TRS H 1 238 7 TRS TMN . T 3 TRS H 1 239 8 TRS TMN . U 4 FLC H 1 240 1 FLC FLC . V 4 FLC H 1 241 3 FLC FLC . W 5 SO4 H 1 242 1 SO4 SO4 . X 5 SO4 H 1 243 2 SO4 SO4 . Y 5 SO4 H 1 244 3 SO4 SO4 . Z 5 SO4 H 1 245 7 SO4 SO4 . AA 5 SO4 H 1 246 8 SO4 SO4 . BA 5 SO4 H 1 247 13 SO4 SO4 . CA 6 HOH L 1 229 1 HOH HOH . CA 6 HOH L 2 230 3 HOH HOH . CA 6 HOH L 3 231 4 HOH HOH . CA 6 HOH L 4 232 5 HOH HOH . CA 6 HOH L 5 233 7 HOH HOH . CA 6 HOH L 6 234 9 HOH HOH . CA 6 HOH L 7 235 14 HOH HOH . CA 6 HOH L 8 236 15 HOH HOH . CA 6 HOH L 9 237 16 HOH HOH . CA 6 HOH L 10 238 17 HOH HOH . CA 6 HOH L 11 239 18 HOH HOH . CA 6 HOH L 12 240 22 HOH HOH . CA 6 HOH L 13 241 24 HOH HOH . CA 6 HOH L 14 242 26 HOH HOH . CA 6 HOH L 15 243 27 HOH HOH . CA 6 HOH L 16 244 28 HOH HOH . CA 6 HOH L 17 245 29 HOH HOH . CA 6 HOH L 18 246 34 HOH HOH . CA 6 HOH L 19 247 40 HOH HOH . CA 6 HOH L 20 248 47 HOH HOH . CA 6 HOH L 21 249 50 HOH HOH . CA 6 HOH L 22 250 51 HOH HOH . CA 6 HOH L 23 251 54 HOH HOH . CA 6 HOH L 24 252 56 HOH HOH . CA 6 HOH L 25 253 57 HOH HOH . CA 6 HOH L 26 254 58 HOH HOH . CA 6 HOH L 27 255 60 HOH HOH . CA 6 HOH L 28 256 61 HOH HOH . CA 6 HOH L 29 257 62 HOH HOH . CA 6 HOH L 30 258 63 HOH HOH . CA 6 HOH L 31 259 67 HOH HOH . CA 6 HOH L 32 260 70 HOH HOH . CA 6 HOH L 33 261 71 HOH HOH . CA 6 HOH L 34 262 72 HOH HOH . CA 6 HOH L 35 263 73 HOH HOH . CA 6 HOH L 36 264 74 HOH HOH . CA 6 HOH L 37 265 75 HOH HOH . CA 6 HOH L 38 266 76 HOH HOH . CA 6 HOH L 39 267 77 HOH HOH . CA 6 HOH L 40 268 82 HOH HOH . CA 6 HOH L 41 269 83 HOH HOH . CA 6 HOH L 42 270 85 HOH HOH . CA 6 HOH L 43 271 86 HOH HOH . CA 6 HOH L 44 272 88 HOH HOH . CA 6 HOH L 45 273 90 HOH HOH . CA 6 HOH L 46 274 91 HOH HOH . CA 6 HOH L 47 275 94 HOH HOH . CA 6 HOH L 48 276 97 HOH HOH . CA 6 HOH L 49 277 98 HOH HOH . CA 6 HOH L 50 278 100 HOH HOH . CA 6 HOH L 51 279 103 HOH HOH . CA 6 HOH L 52 280 104 HOH HOH . CA 6 HOH L 53 281 108 HOH HOH . CA 6 HOH L 54 282 109 HOH HOH . CA 6 HOH L 55 283 112 HOH HOH . CA 6 HOH L 56 284 113 HOH HOH . CA 6 HOH L 57 285 114 HOH HOH . CA 6 HOH L 58 286 115 HOH HOH . CA 6 HOH L 59 287 116 HOH HOH . CA 6 HOH L 60 288 117 HOH HOH . CA 6 HOH L 61 289 118 HOH HOH . CA 6 HOH L 62 290 130 HOH HOH . CA 6 HOH L 63 291 137 HOH HOH . CA 6 HOH L 64 292 140 HOH HOH . CA 6 HOH L 65 293 141 HOH HOH . CA 6 HOH L 66 294 142 HOH HOH . CA 6 HOH L 67 295 143 HOH HOH . CA 6 HOH L 68 296 144 HOH HOH . CA 6 HOH L 69 297 145 HOH HOH . CA 6 HOH L 70 298 146 HOH HOH . CA 6 HOH L 71 299 147 HOH HOH . CA 6 HOH L 72 300 153 HOH HOH . CA 6 HOH L 73 301 155 HOH HOH . CA 6 HOH L 74 302 157 HOH HOH . CA 6 HOH L 75 303 159 HOH HOH . CA 6 HOH L 76 304 161 HOH HOH . CA 6 HOH L 77 305 162 HOH HOH . DA 6 HOH H 1 134 134 HOH HOH . DA 6 HOH H 2 135 135 HOH HOH . DA 6 HOH H 3 158 158 HOH HOH . DA 6 HOH H 4 160 160 HOH HOH . DA 6 HOH H 5 248 2 HOH HOH . DA 6 HOH H 6 249 6 HOH HOH . DA 6 HOH H 7 250 8 HOH HOH . DA 6 HOH H 8 251 10 HOH HOH . DA 6 HOH H 9 252 11 HOH HOH . DA 6 HOH H 10 253 12 HOH HOH . DA 6 HOH H 11 254 13 HOH HOH . DA 6 HOH H 12 255 19 HOH HOH . DA 6 HOH H 13 256 20 HOH HOH . DA 6 HOH H 14 257 21 HOH HOH . DA 6 HOH H 15 258 23 HOH HOH . DA 6 HOH H 16 259 25 HOH HOH . DA 6 HOH H 17 260 30 HOH HOH . DA 6 HOH H 18 261 31 HOH HOH . DA 6 HOH H 19 262 32 HOH HOH . DA 6 HOH H 20 263 33 HOH HOH . DA 6 HOH H 21 264 35 HOH HOH . DA 6 HOH H 22 265 36 HOH HOH . DA 6 HOH H 23 266 37 HOH HOH . DA 6 HOH H 24 267 38 HOH HOH . DA 6 HOH H 25 268 39 HOH HOH . DA 6 HOH H 26 269 41 HOH HOH . DA 6 HOH H 27 270 42 HOH HOH . DA 6 HOH H 28 271 43 HOH HOH . DA 6 HOH H 29 272 44 HOH HOH . DA 6 HOH H 30 273 45 HOH HOH . DA 6 HOH H 31 274 46 HOH HOH . DA 6 HOH H 32 275 48 HOH HOH . DA 6 HOH H 33 276 49 HOH HOH . DA 6 HOH H 34 277 52 HOH HOH . DA 6 HOH H 35 278 53 HOH HOH . DA 6 HOH H 36 279 55 HOH HOH . DA 6 HOH H 37 280 59 HOH HOH . DA 6 HOH H 38 281 64 HOH HOH . DA 6 HOH H 39 282 65 HOH HOH . DA 6 HOH H 40 283 66 HOH HOH . DA 6 HOH H 41 284 68 HOH HOH . DA 6 HOH H 42 285 69 HOH HOH . DA 6 HOH H 43 286 78 HOH HOH . DA 6 HOH H 44 287 79 HOH HOH . DA 6 HOH H 45 288 80 HOH HOH . DA 6 HOH H 46 289 81 HOH HOH . DA 6 HOH H 47 290 84 HOH HOH . DA 6 HOH H 48 291 87 HOH HOH . DA 6 HOH H 49 292 89 HOH HOH . DA 6 HOH H 50 293 92 HOH HOH . DA 6 HOH H 51 294 93 HOH HOH . DA 6 HOH H 52 295 95 HOH HOH . DA 6 HOH H 53 296 96 HOH HOH . DA 6 HOH H 54 297 99 HOH HOH . DA 6 HOH H 55 298 101 HOH HOH . DA 6 HOH H 56 299 102 HOH HOH . DA 6 HOH H 57 300 105 HOH HOH . DA 6 HOH H 58 301 106 HOH HOH . DA 6 HOH H 59 302 107 HOH HOH . DA 6 HOH H 60 303 110 HOH HOH . DA 6 HOH H 61 304 111 HOH HOH . DA 6 HOH H 62 305 119 HOH HOH . DA 6 HOH H 63 306 120 HOH HOH . DA 6 HOH H 64 307 121 HOH HOH . DA 6 HOH H 65 308 122 HOH HOH . DA 6 HOH H 66 309 123 HOH HOH . DA 6 HOH H 67 310 124 HOH HOH . DA 6 HOH H 68 311 125 HOH HOH . DA 6 HOH H 69 312 126 HOH HOH . DA 6 HOH H 70 313 127 HOH HOH . DA 6 HOH H 71 314 128 HOH HOH . DA 6 HOH H 72 315 129 HOH HOH . DA 6 HOH H 73 316 131 HOH HOH . DA 6 HOH H 74 317 132 HOH HOH . DA 6 HOH H 75 318 133 HOH HOH . DA 6 HOH H 76 319 136 HOH HOH . DA 6 HOH H 77 320 138 HOH HOH . DA 6 HOH H 78 321 139 HOH HOH . DA 6 HOH H 79 322 148 HOH HOH . DA 6 HOH H 80 323 149 HOH HOH . DA 6 HOH H 81 324 150 HOH HOH . DA 6 HOH H 82 325 151 HOH HOH . DA 6 HOH H 83 326 152 HOH HOH . DA 6 HOH H 84 327 154 HOH HOH . DA 6 HOH H 85 328 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -76.166 21.379 40.435 1 84.94 ? C TRS 215 L 1 HETATM 2 C C1 TRS . . . C 3 -75.726 19.91 40.447 1 85.06 ? C1 TRS 215 L 1 HETATM 3 C C2 TRS . . . C 3 -74.96 22.241 40.818 1 84.63 ? C2 TRS 215 L 1 HETATM 4 C C3 TRS . . . C 3 -77.391 21.625 41.317 1 85.36 ? C3 TRS 215 L 1 HETATM 5 N N TRS . . . C 3 -76.66 21.775 39.086 1 84.63 ? N TRS 215 L 1 HETATM 6 O O1 TRS . . . C 3 -75.894 19.242 41.706 1 85.41 ? O1 TRS 215 L 1 HETATM 7 O O2 TRS . . . C 3 -75.09 23.519 40.197 1 84.08 ? O2 TRS 215 L 1 HETATM 8 O O3 TRS . . . C 3 -78.548 21.142 40.613 1 85.18 ? O3 TRS 215 L 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #