data_3O2Y
#
_model_server_result.job_id            wB5E34qzOHLszCg8T_yKqA 
_model_server_result.datetime_utc      '2024-11-14 07:04:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":252}' 
#
_entry.id    3O2Y 
#
_exptl.entry_id    3O2Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3O2Y 
_cell.length_a            90.221 
_cell.length_b            90.221 
_cell.length_c            35.635 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 89 1_555 A SG CYS 158 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 B SG CYS 61 B CYS 89 1_555 B SG CYS 158 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3O2Y 
_atom_sites.fract_transf_matrix[1][1]    0.011084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028062 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLA A 1 200 200 OLA OLA . 
D 3 PLM A 1 201 201 PLM PLM . 
E 2 OLA B 1 202 202 OLA OLA . 
F 3 PLM B 1 203 203 PLM PLM . 
G 4 GOL B 1 252 252 GOL GOL . 
H 5 HOH A 1 1 1 HOH HOH . 
H 5 HOH A 2 3 3 HOH HOH . 
H 5 HOH A 3 4 4 HOH HOH . 
H 5 HOH A 4 5 5 HOH HOH . 
H 5 HOH A 5 6 6 HOH HOH . 
H 5 HOH A 6 7 7 HOH HOH . 
H 5 HOH A 7 8 8 HOH HOH . 
H 5 HOH A 8 9 9 HOH HOH . 
H 5 HOH A 9 10 10 HOH HOH . 
H 5 HOH A 10 15 15 HOH HOH . 
H 5 HOH A 11 16 16 HOH HOH . 
H 5 HOH A 12 18 18 HOH HOH . 
H 5 HOH A 13 19 19 HOH HOH . 
H 5 HOH A 14 20 20 HOH HOH . 
H 5 HOH A 15 21 21 HOH HOH . 
H 5 HOH A 16 22 22 HOH HOH . 
H 5 HOH A 17 25 25 HOH HOH . 
H 5 HOH A 18 26 26 HOH HOH . 
H 5 HOH A 19 27 27 HOH HOH . 
H 5 HOH A 20 28 28 HOH HOH . 
H 5 HOH A 21 191 31 HOH HOH . 
H 5 HOH A 22 192 32 HOH HOH . 
H 5 HOH A 23 193 33 HOH HOH . 
H 5 HOH A 24 194 34 HOH HOH . 
H 5 HOH A 25 195 35 HOH HOH . 
H 5 HOH A 26 196 36 HOH HOH . 
H 5 HOH A 27 197 37 HOH HOH . 
H 5 HOH A 28 198 38 HOH HOH . 
H 5 HOH A 29 199 41 HOH HOH . 
H 5 HOH A 30 202 42 HOH HOH . 
H 5 HOH A 31 203 43 HOH HOH . 
H 5 HOH A 32 204 44 HOH HOH . 
H 5 HOH A 33 205 48 HOH HOH . 
H 5 HOH A 34 206 51 HOH HOH . 
H 5 HOH A 35 207 53 HOH HOH . 
H 5 HOH A 36 208 54 HOH HOH . 
H 5 HOH A 37 209 55 HOH HOH . 
H 5 HOH A 38 210 57 HOH HOH . 
H 5 HOH A 39 211 58 HOH HOH . 
H 5 HOH A 40 212 60 HOH HOH . 
H 5 HOH A 41 213 63 HOH HOH . 
H 5 HOH A 42 214 65 HOH HOH . 
H 5 HOH A 43 215 66 HOH HOH . 
H 5 HOH A 44 216 67 HOH HOH . 
H 5 HOH A 45 217 68 HOH HOH . 
H 5 HOH A 46 218 69 HOH HOH . 
H 5 HOH A 47 219 70 HOH HOH . 
H 5 HOH A 48 220 71 HOH HOH . 
H 5 HOH A 49 221 72 HOH HOH . 
H 5 HOH A 50 222 73 HOH HOH . 
H 5 HOH A 51 223 74 HOH HOH . 
H 5 HOH A 52 224 75 HOH HOH . 
H 5 HOH A 53 225 76 HOH HOH . 
H 5 HOH A 54 226 77 HOH HOH . 
H 5 HOH A 55 227 78 HOH HOH . 
H 5 HOH A 56 228 79 HOH HOH . 
H 5 HOH A 57 229 81 HOH HOH . 
H 5 HOH A 58 230 82 HOH HOH . 
H 5 HOH A 59 231 83 HOH HOH . 
H 5 HOH A 60 232 84 HOH HOH . 
H 5 HOH A 61 233 86 HOH HOH . 
H 5 HOH A 62 234 87 HOH HOH . 
H 5 HOH A 63 235 88 HOH HOH . 
H 5 HOH A 64 236 89 HOH HOH . 
H 5 HOH A 65 237 90 HOH HOH . 
H 5 HOH A 66 238 92 HOH HOH . 
H 5 HOH A 67 239 93 HOH HOH . 
H 5 HOH A 68 240 94 HOH HOH . 
H 5 HOH A 69 241 96 HOH HOH . 
H 5 HOH A 70 242 99 HOH HOH . 
H 5 HOH A 71 243 103 HOH HOH . 
H 5 HOH A 72 244 105 HOH HOH . 
H 5 HOH A 73 245 106 HOH HOH . 
H 5 HOH A 74 246 107 HOH HOH . 
H 5 HOH A 75 247 108 HOH HOH . 
H 5 HOH A 76 248 111 HOH HOH . 
H 5 HOH A 77 249 112 HOH HOH . 
H 5 HOH A 78 250 113 HOH HOH . 
H 5 HOH A 79 251 114 HOH HOH . 
H 5 HOH A 80 252 115 HOH HOH . 
H 5 HOH A 81 253 116 HOH HOH . 
H 5 HOH A 82 254 118 HOH HOH . 
H 5 HOH A 83 255 120 HOH HOH . 
H 5 HOH A 84 256 121 HOH HOH . 
H 5 HOH A 85 257 122 HOH HOH . 
H 5 HOH A 86 258 123 HOH HOH . 
H 5 HOH A 87 259 124 HOH HOH . 
H 5 HOH A 88 260 125 HOH HOH . 
H 5 HOH A 89 261 126 HOH HOH . 
H 5 HOH A 90 262 127 HOH HOH . 
H 5 HOH A 91 263 128 HOH HOH . 
H 5 HOH A 92 264 129 HOH HOH . 
H 5 HOH A 93 265 131 HOH HOH . 
H 5 HOH A 94 266 132 HOH HOH . 
H 5 HOH A 95 267 138 HOH HOH . 
H 5 HOH A 96 268 139 HOH HOH . 
H 5 HOH A 97 269 143 HOH HOH . 
H 5 HOH A 98 270 144 HOH HOH . 
H 5 HOH A 99 271 145 HOH HOH . 
H 5 HOH A 100 272 146 HOH HOH . 
H 5 HOH A 101 273 147 HOH HOH . 
H 5 HOH A 102 274 148 HOH HOH . 
H 5 HOH A 103 275 153 HOH HOH . 
H 5 HOH A 104 276 154 HOH HOH . 
H 5 HOH A 105 277 155 HOH HOH . 
H 5 HOH A 106 278 156 HOH HOH . 
H 5 HOH A 107 279 157 HOH HOH . 
I 5 HOH B 1 2 2 HOH HOH . 
I 5 HOH B 2 11 11 HOH HOH . 
I 5 HOH B 3 12 12 HOH HOH . 
I 5 HOH B 4 13 13 HOH HOH . 
I 5 HOH B 5 14 14 HOH HOH . 
I 5 HOH B 6 17 17 HOH HOH . 
I 5 HOH B 7 23 23 HOH HOH . 
I 5 HOH B 8 24 24 HOH HOH . 
I 5 HOH B 9 191 29 HOH HOH . 
I 5 HOH B 10 192 30 HOH HOH . 
I 5 HOH B 11 193 39 HOH HOH . 
I 5 HOH B 12 194 40 HOH HOH . 
I 5 HOH B 13 195 45 HOH HOH . 
I 5 HOH B 14 196 46 HOH HOH . 
I 5 HOH B 15 197 47 HOH HOH . 
I 5 HOH B 16 198 49 HOH HOH . 
I 5 HOH B 17 199 50 HOH HOH . 
I 5 HOH B 18 200 52 HOH HOH . 
I 5 HOH B 19 201 56 HOH HOH . 
I 5 HOH B 20 204 59 HOH HOH . 
I 5 HOH B 21 205 61 HOH HOH . 
I 5 HOH B 22 206 62 HOH HOH . 
I 5 HOH B 23 207 64 HOH HOH . 
I 5 HOH B 24 208 80 HOH HOH . 
I 5 HOH B 25 209 85 HOH HOH . 
I 5 HOH B 26 210 91 HOH HOH . 
I 5 HOH B 27 211 95 HOH HOH . 
I 5 HOH B 28 212 97 HOH HOH . 
I 5 HOH B 29 213 98 HOH HOH . 
I 5 HOH B 30 214 100 HOH HOH . 
I 5 HOH B 31 215 101 HOH HOH . 
I 5 HOH B 32 216 104 HOH HOH . 
I 5 HOH B 33 217 109 HOH HOH . 
I 5 HOH B 34 218 110 HOH HOH . 
I 5 HOH B 35 219 117 HOH HOH . 
I 5 HOH B 36 220 119 HOH HOH . 
I 5 HOH B 37 221 130 HOH HOH . 
I 5 HOH B 38 222 133 HOH HOH . 
I 5 HOH B 39 223 134 HOH HOH . 
I 5 HOH B 40 224 135 HOH HOH . 
I 5 HOH B 41 225 136 HOH HOH . 
I 5 HOH B 42 226 137 HOH HOH . 
I 5 HOH B 43 227 140 HOH HOH . 
I 5 HOH B 44 228 141 HOH HOH . 
I 5 HOH B 45 229 142 HOH HOH . 
I 5 HOH B 46 230 149 HOH HOH . 
I 5 HOH B 47 231 151 HOH HOH . 
I 5 HOH B 48 232 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 37.156 -45.724 17.155 1 40.44 ? C1 GOL 252 B 1 
HETATM 2 O O1 GOL . . . G 4 36.39 -45.594 18.312 1 44.01 ? O1 GOL 252 B 1 
HETATM 3 C C2 GOL . . . G 4 37.391 -44.284 16.819 1 43.37 ? C2 GOL 252 B 1 
HETATM 4 O O2 GOL . . . G 4 36.371 -43.647 17.547 1 48.12 ? O2 GOL 252 B 1 
HETATM 5 C C3 GOL . . . G 4 38.703 -43.818 17.411 1 47.91 ? C3 GOL 252 B 1 
HETATM 6 O O3 GOL . . . G 4 38.893 -44.451 18.67 1 49.82 ? O3 GOL 252 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#