data_3O39
#
_model_server_result.job_id            ZGDzeX39nl98XiQZvjJWKw 
_model_server_result.datetime_utc      '2025-04-02 06:28:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":9}' 
#
_entry.id    3O39 
#
_exptl.entry_id    3O39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3O39 
_cell.length_a            68.971 
_cell.length_b            68.971 
_cell.length_c            124.281 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 29 A ILE 45 1_555 A N MSE 30 A MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 30 A MSE 46 1_555 A N LYS 31 A LYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLN 36 A GLN 52 1_555 A N MSE 37 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 37 A MSE 53 1_555 A N LYS 38 A LYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C ALA 47 A ALA 63 1_555 A N MSE 48 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C MSE 48 A MSE 64 1_555 A N HIS 49 A HIS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale7 A C LYS 68 A LYS 84 1_555 A N MSE 69 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 A C MSE 69 A MSE 85 1_555 A N GLU 70 A GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale9 A C ASN 76 A ASN 92 1_555 A N MSE 77 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale10 A C MSE 77 A MSE 93 1_555 A N LEU 78 A LEU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 A C HIS 80 A HIS 96 1_555 A N MSE 81 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale12 A C MSE 81 A MSE 97 1_555 A N GLU 82 A GLU 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 B C ILE 29 B ILE 45 1_555 B N MSE 30 B MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale14 B C MSE 30 B MSE 46 1_555 B N LYS 31 B LYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 B C GLN 36 B GLN 52 1_555 B N MSE 37 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C MSE 37 B MSE 53 1_555 B N LYS 38 B LYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale17 B C ALA 47 B ALA 63 1_555 B N MSE 48 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 B C MSE 48 B MSE 64 1_555 B N HIS 49 B HIS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 B C LYS 68 B LYS 84 1_555 B N MSE 69 B MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 B C MSE 69 B MSE 85 1_555 B N GLU 70 B GLU 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 B C ASN 76 B ASN 92 1_555 B N MSE 77 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale22 B C MSE 77 B MSE 93 1_555 B N LEU 78 B LEU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale23 B C HIS 80 B HIS 96 1_555 B N MSE 81 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale24 B C MSE 81 B MSE 97 1_555 B N GLU 82 B GLU 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 C CD CD . A CD 1 1_555 A OD1 ASP 50 A ASP 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc2 E CD CD . A CD 6 1_555 A OD2 ASP 20 A ASP 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc3 A OE2 GLU 70 A GLU 86 1_555 G CD CD . B CD 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3O39 
_atom_sites.fract_transf_matrix[1][1]    0.014499 
_atom_sites.fract_transf_matrix[1][2]    0.008371 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 1 1 CD CD . 
D 2 CD A 1 2 2 CD CD . 
E 2 CD A 1 6 6 CD CD . 
F 2 CD A 1 8 8 CD CD . 
G 2 CD B 1 3 3 CD CD . 
H 2 CD B 1 4 4 CD CD . 
I 2 CD B 1 5 5 CD CD . 
J 2 CD B 1 7 7 CD CD . 
K 2 CD B 1 9 9 CD CD . 
L 3 HOH A 1 3 3 HOH HOH . 
L 3 HOH A 2 5 5 HOH HOH . 
L 3 HOH A 3 7 7 HOH HOH . 
L 3 HOH A 4 125 1 HOH HOH . 
L 3 HOH A 5 126 2 HOH HOH . 
L 3 HOH A 6 127 8 HOH HOH . 
L 3 HOH A 7 128 18 HOH HOH . 
L 3 HOH A 8 129 22 HOH HOH . 
L 3 HOH A 9 130 23 HOH HOH . 
L 3 HOH A 10 131 24 HOH HOH . 
M 3 HOH B 1 11 11 HOH HOH . 
M 3 HOH B 2 12 12 HOH HOH . 
M 3 HOH B 3 13 13 HOH HOH . 
M 3 HOH B 4 14 14 HOH HOH . 
M 3 HOH B 5 15 15 HOH HOH . 
M 3 HOH B 6 125 9 HOH HOH . 
M 3 HOH B 7 126 17 HOH HOH . 
M 3 HOH B 8 127 19 HOH HOH . 
M 3 HOH B 9 128 20 HOH HOH . 
M 3 HOH B 10 129 21 HOH HOH . 
M 3 HOH B 11 130 25 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               5.958 
_atom_site.Cartn_y               1.848 
_atom_site.Cartn_z               -7.943 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        87.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           9 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#