data_3O5I # _model_server_result.job_id SytugffA5-suxwXUQbAoTg _model_server_result.datetime_utc '2024-11-20 02:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3O5I # _exptl.entry_id 3O5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O5I _cell.length_a 48.353 _cell.length_b 48.353 _cell.length_c 180.478 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3O5I _atom_sites.fract_transf_matrix[1][1] 0.020681 _atom_sites.fract_transf_matrix[1][2] 0.01194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 1 1 GOL GOL . D 3 ACT B 1 141 141 ACT ACT . E 4 HOH A 1 1 1 HOH HOH . E 4 HOH A 2 2 2 HOH HOH . E 4 HOH A 3 3 3 HOH HOH . E 4 HOH A 4 5 5 HOH HOH . E 4 HOH A 5 6 6 HOH HOH . E 4 HOH A 6 8 8 HOH HOH . E 4 HOH A 7 9 9 HOH HOH . E 4 HOH A 8 10 10 HOH HOH . E 4 HOH A 9 11 11 HOH HOH . E 4 HOH A 10 12 12 HOH HOH . E 4 HOH A 11 141 141 HOH HOH . E 4 HOH A 12 142 142 HOH HOH . E 4 HOH A 13 143 143 HOH HOH . E 4 HOH A 14 144 144 HOH HOH . E 4 HOH A 15 145 145 HOH HOH . E 4 HOH A 16 146 146 HOH HOH . E 4 HOH A 17 147 147 HOH HOH . E 4 HOH A 18 148 148 HOH HOH . E 4 HOH A 19 149 149 HOH HOH . E 4 HOH A 20 150 150 HOH HOH . E 4 HOH A 21 151 151 HOH HOH . E 4 HOH A 22 152 152 HOH HOH . E 4 HOH A 23 153 153 HOH HOH . E 4 HOH A 24 154 154 HOH HOH . E 4 HOH A 25 155 155 HOH HOH . E 4 HOH A 26 156 156 HOH HOH . E 4 HOH A 27 157 157 HOH HOH . E 4 HOH A 28 158 158 HOH HOH . E 4 HOH A 29 159 159 HOH HOH . E 4 HOH A 30 160 160 HOH HOH . E 4 HOH A 31 161 161 HOH HOH . E 4 HOH A 32 162 162 HOH HOH . E 4 HOH A 33 163 163 HOH HOH . E 4 HOH A 34 164 164 HOH HOH . E 4 HOH A 35 165 165 HOH HOH . E 4 HOH A 36 166 166 HOH HOH . E 4 HOH A 37 167 167 HOH HOH . E 4 HOH A 38 168 168 HOH HOH . E 4 HOH A 39 169 169 HOH HOH . E 4 HOH A 40 170 170 HOH HOH . E 4 HOH A 41 171 171 HOH HOH . E 4 HOH A 42 172 172 HOH HOH . E 4 HOH A 43 173 173 HOH HOH . E 4 HOH A 44 174 174 HOH HOH . E 4 HOH A 45 175 175 HOH HOH . E 4 HOH A 46 176 176 HOH HOH . E 4 HOH A 47 177 177 HOH HOH . E 4 HOH A 48 178 178 HOH HOH . E 4 HOH A 49 179 179 HOH HOH . E 4 HOH A 50 180 180 HOH HOH . E 4 HOH A 51 181 181 HOH HOH . E 4 HOH A 52 182 182 HOH HOH . E 4 HOH A 53 183 183 HOH HOH . E 4 HOH A 54 184 184 HOH HOH . E 4 HOH A 55 185 185 HOH HOH . E 4 HOH A 56 186 186 HOH HOH . E 4 HOH A 57 187 187 HOH HOH . E 4 HOH A 58 188 188 HOH HOH . E 4 HOH A 59 189 189 HOH HOH . E 4 HOH A 60 190 190 HOH HOH . E 4 HOH A 61 191 191 HOH HOH . E 4 HOH A 62 192 192 HOH HOH . E 4 HOH A 63 193 193 HOH HOH . E 4 HOH A 64 194 194 HOH HOH . E 4 HOH A 65 195 195 HOH HOH . E 4 HOH A 66 196 196 HOH HOH . E 4 HOH A 67 197 197 HOH HOH . E 4 HOH A 68 198 198 HOH HOH . E 4 HOH A 69 199 199 HOH HOH . E 4 HOH A 70 200 200 HOH HOH . E 4 HOH A 71 201 201 HOH HOH . E 4 HOH A 72 202 202 HOH HOH . E 4 HOH A 73 203 203 HOH HOH . E 4 HOH A 74 204 204 HOH HOH . E 4 HOH A 75 205 205 HOH HOH . E 4 HOH A 76 206 206 HOH HOH . E 4 HOH A 77 207 207 HOH HOH . E 4 HOH A 78 208 208 HOH HOH . E 4 HOH A 79 209 209 HOH HOH . E 4 HOH A 80 210 210 HOH HOH . E 4 HOH A 81 211 211 HOH HOH . E 4 HOH A 82 212 212 HOH HOH . E 4 HOH A 83 213 213 HOH HOH . E 4 HOH A 84 214 214 HOH HOH . E 4 HOH A 85 215 215 HOH HOH . E 4 HOH A 86 216 216 HOH HOH . E 4 HOH A 87 217 217 HOH HOH . E 4 HOH A 88 218 218 HOH HOH . E 4 HOH A 89 219 219 HOH HOH . E 4 HOH A 90 220 220 HOH HOH . E 4 HOH A 91 221 221 HOH HOH . E 4 HOH A 92 222 222 HOH HOH . F 4 HOH B 1 4 4 HOH HOH . F 4 HOH B 2 7 7 HOH HOH . F 4 HOH B 3 142 142 HOH HOH . F 4 HOH B 4 143 143 HOH HOH . F 4 HOH B 5 144 144 HOH HOH . F 4 HOH B 6 145 145 HOH HOH . F 4 HOH B 7 146 146 HOH HOH . F 4 HOH B 8 147 147 HOH HOH . F 4 HOH B 9 148 148 HOH HOH . F 4 HOH B 10 149 149 HOH HOH . F 4 HOH B 11 150 150 HOH HOH . F 4 HOH B 12 151 151 HOH HOH . F 4 HOH B 13 152 152 HOH HOH . F 4 HOH B 14 153 153 HOH HOH . F 4 HOH B 15 154 154 HOH HOH . F 4 HOH B 16 155 155 HOH HOH . F 4 HOH B 17 156 156 HOH HOH . F 4 HOH B 18 157 157 HOH HOH . F 4 HOH B 19 158 158 HOH HOH . F 4 HOH B 20 159 159 HOH HOH . F 4 HOH B 21 160 160 HOH HOH . F 4 HOH B 22 161 161 HOH HOH . F 4 HOH B 23 162 162 HOH HOH . F 4 HOH B 24 163 163 HOH HOH . F 4 HOH B 25 164 164 HOH HOH . F 4 HOH B 26 165 165 HOH HOH . F 4 HOH B 27 166 166 HOH HOH . F 4 HOH B 28 167 167 HOH HOH . F 4 HOH B 29 168 168 HOH HOH . F 4 HOH B 30 169 169 HOH HOH . F 4 HOH B 31 170 170 HOH HOH . F 4 HOH B 32 171 171 HOH HOH . F 4 HOH B 33 172 172 HOH HOH . F 4 HOH B 34 173 173 HOH HOH . F 4 HOH B 35 174 174 HOH HOH . F 4 HOH B 36 175 175 HOH HOH . F 4 HOH B 37 177 177 HOH HOH . F 4 HOH B 38 178 178 HOH HOH . F 4 HOH B 39 179 179 HOH HOH . F 4 HOH B 40 180 180 HOH HOH . F 4 HOH B 41 181 181 HOH HOH . F 4 HOH B 42 182 182 HOH HOH . F 4 HOH B 43 183 183 HOH HOH . F 4 HOH B 44 184 184 HOH HOH . F 4 HOH B 45 185 185 HOH HOH . F 4 HOH B 46 186 186 HOH HOH . F 4 HOH B 47 187 187 HOH HOH . F 4 HOH B 48 188 188 HOH HOH . F 4 HOH B 49 189 189 HOH HOH . F 4 HOH B 50 190 190 HOH HOH . F 4 HOH B 51 191 191 HOH HOH . F 4 HOH B 52 192 192 HOH HOH . F 4 HOH B 53 193 193 HOH HOH . F 4 HOH B 54 194 194 HOH HOH . F 4 HOH B 55 195 195 HOH HOH . F 4 HOH B 56 196 196 HOH HOH . F 4 HOH B 57 197 197 HOH HOH . F 4 HOH B 58 198 198 HOH HOH . F 4 HOH B 59 199 199 HOH HOH . F 4 HOH B 60 200 200 HOH HOH . F 4 HOH B 61 201 201 HOH HOH . F 4 HOH B 62 202 202 HOH HOH . F 4 HOH B 63 203 203 HOH HOH . F 4 HOH B 64 204 204 HOH HOH . F 4 HOH B 65 205 205 HOH HOH . F 4 HOH B 66 206 206 HOH HOH . F 4 HOH B 67 207 207 HOH HOH . F 4 HOH B 68 208 208 HOH HOH . F 4 HOH B 69 209 209 HOH HOH . F 4 HOH B 70 210 210 HOH HOH . F 4 HOH B 71 211 211 HOH HOH . F 4 HOH B 72 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 31.429 15.728 135.795 1 27.11 ? C1 GOL 1 B 1 HETATM 2 O O1 GOL . . . C 2 30.747 14.947 136.736 1 30.37 ? O1 GOL 1 B 1 HETATM 3 C C2 GOL . . . C 2 32.466 14.931 135.016 1 29.18 ? C2 GOL 1 B 1 HETATM 4 O O2 GOL . . . C 2 31.824 14.115 134.064 1 29.42 ? O2 GOL 1 B 1 HETATM 5 C C3 GOL . . . C 2 33.358 14.094 135.921 1 27.96 ? C3 GOL 1 B 1 HETATM 6 O O3 GOL . . . C 2 34.279 13.374 135.107 1 30.21 ? O3 GOL 1 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #