data_3O5L # _model_server_result.job_id li70piP-qN15nAfg4o02zQ _model_server_result.datetime_utc '2024-10-19 00:47:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3O5L # _exptl.entry_id 3O5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O5L _cell.length_a 47.978 _cell.length_b 47.978 _cell.length_c 88.998 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3O5L _atom_sites.fract_transf_matrix[1][1] 0.020843 _atom_sites.fract_transf_matrix[1][2] 0.012034 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 1 1 1PE 1PE . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 10 10 HOH HOH . C 3 HOH A 9 11 11 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 141 141 HOH HOH . C 3 HOH A 12 142 142 HOH HOH . C 3 HOH A 13 143 143 HOH HOH . C 3 HOH A 14 144 144 HOH HOH . C 3 HOH A 15 145 145 HOH HOH . C 3 HOH A 16 146 146 HOH HOH . C 3 HOH A 17 147 147 HOH HOH . C 3 HOH A 18 148 148 HOH HOH . C 3 HOH A 19 149 149 HOH HOH . C 3 HOH A 20 150 150 HOH HOH . C 3 HOH A 21 151 151 HOH HOH . C 3 HOH A 22 152 152 HOH HOH . C 3 HOH A 23 153 153 HOH HOH . C 3 HOH A 24 154 154 HOH HOH . C 3 HOH A 25 155 155 HOH HOH . C 3 HOH A 26 156 156 HOH HOH . C 3 HOH A 27 157 157 HOH HOH . C 3 HOH A 28 158 158 HOH HOH . C 3 HOH A 29 159 159 HOH HOH . C 3 HOH A 30 160 160 HOH HOH . C 3 HOH A 31 161 161 HOH HOH . C 3 HOH A 32 162 162 HOH HOH . C 3 HOH A 33 163 163 HOH HOH . C 3 HOH A 34 164 164 HOH HOH . C 3 HOH A 35 165 165 HOH HOH . C 3 HOH A 36 166 166 HOH HOH . C 3 HOH A 37 167 167 HOH HOH . C 3 HOH A 38 168 168 HOH HOH . C 3 HOH A 39 169 169 HOH HOH . C 3 HOH A 40 170 170 HOH HOH . C 3 HOH A 41 171 171 HOH HOH . C 3 HOH A 42 172 172 HOH HOH . C 3 HOH A 43 173 173 HOH HOH . C 3 HOH A 44 174 13 HOH HOH . C 3 HOH A 45 175 14 HOH HOH . C 3 HOH A 46 176 15 HOH HOH . C 3 HOH A 47 177 16 HOH HOH . C 3 HOH A 48 178 17 HOH HOH . C 3 HOH A 49 179 18 HOH HOH . C 3 HOH A 50 180 19 HOH HOH . C 3 HOH A 51 181 20 HOH HOH . C 3 HOH A 52 182 22 HOH HOH . C 3 HOH A 53 183 23 HOH HOH . C 3 HOH A 54 184 24 HOH HOH . C 3 HOH A 55 185 25 HOH HOH . C 3 HOH A 56 186 26 HOH HOH . C 3 HOH A 57 187 27 HOH HOH . C 3 HOH A 58 188 28 HOH HOH . C 3 HOH A 59 189 29 HOH HOH . C 3 HOH A 60 190 30 HOH HOH . C 3 HOH A 61 191 31 HOH HOH . C 3 HOH A 62 192 32 HOH HOH . C 3 HOH A 63 193 33 HOH HOH . C 3 HOH A 64 194 34 HOH HOH . C 3 HOH A 65 195 35 HOH HOH . C 3 HOH A 66 196 36 HOH HOH . C 3 HOH A 67 197 37 HOH HOH . C 3 HOH A 68 198 38 HOH HOH . C 3 HOH A 69 199 39 HOH HOH . C 3 HOH A 70 200 40 HOH HOH . C 3 HOH A 71 201 41 HOH HOH . C 3 HOH A 72 202 42 HOH HOH . C 3 HOH A 73 203 43 HOH HOH . C 3 HOH A 74 204 44 HOH HOH . C 3 HOH A 75 205 45 HOH HOH . C 3 HOH A 76 206 46 HOH HOH . C 3 HOH A 77 207 47 HOH HOH . C 3 HOH A 78 208 48 HOH HOH . C 3 HOH A 79 209 49 HOH HOH . C 3 HOH A 80 210 50 HOH HOH . C 3 HOH A 81 211 51 HOH HOH . C 3 HOH A 82 212 52 HOH HOH . C 3 HOH A 83 213 53 HOH HOH . C 3 HOH A 84 214 54 HOH HOH . C 3 HOH A 85 215 55 HOH HOH . C 3 HOH A 86 216 56 HOH HOH . C 3 HOH A 87 217 57 HOH HOH . C 3 HOH A 88 218 58 HOH HOH . C 3 HOH A 89 219 59 HOH HOH . C 3 HOH A 90 220 60 HOH HOH . C 3 HOH A 91 221 62 HOH HOH . C 3 HOH A 92 222 64 HOH HOH . C 3 HOH A 93 223 65 HOH HOH . C 3 HOH A 94 224 66 HOH HOH . C 3 HOH A 95 225 67 HOH HOH . C 3 HOH A 96 226 68 HOH HOH . C 3 HOH A 97 227 69 HOH HOH . C 3 HOH A 98 228 70 HOH HOH . C 3 HOH A 99 229 71 HOH HOH . C 3 HOH A 100 230 72 HOH HOH . C 3 HOH A 101 231 73 HOH HOH . C 3 HOH A 102 232 74 HOH HOH . C 3 HOH A 103 233 75 HOH HOH . C 3 HOH A 104 234 76 HOH HOH . C 3 HOH A 105 235 77 HOH HOH . C 3 HOH A 106 236 78 HOH HOH . C 3 HOH A 107 237 79 HOH HOH . C 3 HOH A 108 238 80 HOH HOH . C 3 HOH A 109 239 81 HOH HOH . C 3 HOH A 110 240 82 HOH HOH . C 3 HOH A 111 241 83 HOH HOH . C 3 HOH A 112 242 84 HOH HOH . C 3 HOH A 113 243 85 HOH HOH . C 3 HOH A 114 244 86 HOH HOH . C 3 HOH A 115 245 87 HOH HOH . C 3 HOH A 116 246 88 HOH HOH . C 3 HOH A 117 247 89 HOH HOH . C 3 HOH A 118 248 90 HOH HOH . C 3 HOH A 119 249 91 HOH HOH . C 3 HOH A 120 250 92 HOH HOH . C 3 HOH A 121 251 93 HOH HOH . C 3 HOH A 122 252 96 HOH HOH . C 3 HOH A 123 253 97 HOH HOH . C 3 HOH A 124 254 98 HOH HOH . C 3 HOH A 125 255 100 HOH HOH . C 3 HOH A 126 256 101 HOH HOH . C 3 HOH A 127 257 102 HOH HOH . C 3 HOH A 128 258 103 HOH HOH . C 3 HOH A 129 259 104 HOH HOH . C 3 HOH A 130 260 105 HOH HOH . C 3 HOH A 131 261 106 HOH HOH . C 3 HOH A 132 262 107 HOH HOH . C 3 HOH A 133 263 108 HOH HOH . C 3 HOH A 134 264 109 HOH HOH . C 3 HOH A 135 265 110 HOH HOH . C 3 HOH A 136 266 112 HOH HOH . C 3 HOH A 137 267 114 HOH HOH . C 3 HOH A 138 268 115 HOH HOH . C 3 HOH A 139 269 116 HOH HOH . C 3 HOH A 140 270 117 HOH HOH . C 3 HOH A 141 271 118 HOH HOH . C 3 HOH A 142 272 119 HOH HOH . C 3 HOH A 143 273 121 HOH HOH . C 3 HOH A 144 274 122 HOH HOH . C 3 HOH A 145 275 123 HOH HOH . C 3 HOH A 146 276 124 HOH HOH . C 3 HOH A 147 277 125 HOH HOH . C 3 HOH A 148 278 126 HOH HOH . C 3 HOH A 149 279 127 HOH HOH . C 3 HOH A 150 280 128 HOH HOH . C 3 HOH A 151 281 129 HOH HOH . C 3 HOH A 152 282 130 HOH HOH . C 3 HOH A 153 283 131 HOH HOH . C 3 HOH A 154 284 132 HOH HOH . C 3 HOH A 155 285 133 HOH HOH . C 3 HOH A 156 286 134 HOH HOH . C 3 HOH A 157 287 135 HOH HOH . C 3 HOH A 158 288 136 HOH HOH . C 3 HOH A 159 289 137 HOH HOH . C 3 HOH A 160 290 138 HOH HOH . C 3 HOH A 161 291 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -8.578 -10.491 -1.942 1 33.85 ? OH2 1PE 1 A 1 HETATM 2 C C12 1PE . . . B 2 -8.958 -10.492 -3.316 1 31.87 ? C12 1PE 1 A 1 HETATM 3 C C22 1PE . . . B 2 -10.45 -10.759 -3.447 1 30.65 ? C22 1PE 1 A 1 HETATM 4 O OH3 1PE . . . B 2 -11.181 -9.842 -2.602 1 30.6 ? OH3 1PE 1 A 1 HETATM 5 C C13 1PE . . . B 2 -12.326 -9.622 -0.507 1 27.49 ? C13 1PE 1 A 1 HETATM 6 C C23 1PE . . . B 2 -12.128 -10.484 -1.743 1 28.72 ? C23 1PE 1 A 1 HETATM 7 O OH4 1PE . . . B 2 -12.969 -8.417 -0.901 1 24.89 ? OH4 1PE 1 A 1 HETATM 8 C C14 1PE . . . B 2 -13.641 -6.238 -0.376 1 21.29 ? C14 1PE 1 A 1 HETATM 9 C C24 1PE . . . B 2 -13.021 -7.491 0.188 1 22.32 ? C24 1PE 1 A 1 HETATM 10 O OH5 1PE . . . B 2 -12.707 -5.755 -1.342 1 21.6 ? OH5 1PE 1 A 1 HETATM 11 C C15 1PE . . . B 2 -12.361 -3.441 -0.75 1 19.55 ? C15 1PE 1 A 1 HETATM 12 C C25 1PE . . . B 2 -12.933 -4.426 -1.767 1 21.48 ? C25 1PE 1 A 1 HETATM 13 O OH6 1PE . . . B 2 -10.96 -3.304 -0.944 1 17.17 ? OH6 1PE 1 A 1 HETATM 14 C C16 1PE . . . B 2 -8.79 -4.18 -0.65 1 19.78 ? C16 1PE 1 A 1 HETATM 15 C C26 1PE . . . B 2 -10.206 -4.197 -0.136 1 19.48 ? C26 1PE 1 A 1 HETATM 16 O OH7 1PE . . . B 2 -8.231 -2.903 -0.451 1 23.29 ? OH7 1PE 1 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #