data_3O5M # _model_server_result.job_id yW93TK5fHbBaFwERD4QM8Q _model_server_result.datetime_utc '2024-11-28 01:19:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3O5M # _exptl.entry_id 3O5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O5M _cell.length_a 48.774 _cell.length_b 48.774 _cell.length_c 179.986 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3O5M _atom_sites.fract_transf_matrix[1][1] 0.020503 _atom_sites.fract_transf_matrix[1][2] 0.011837 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 1 1 GOL GOL . D 3 HOH A 1 1 1 HOH HOH . D 3 HOH A 2 2 2 HOH HOH . D 3 HOH A 3 3 3 HOH HOH . D 3 HOH A 4 5 5 HOH HOH . D 3 HOH A 5 6 6 HOH HOH . D 3 HOH A 6 8 8 HOH HOH . D 3 HOH A 7 9 9 HOH HOH . D 3 HOH A 8 10 10 HOH HOH . D 3 HOH A 9 11 11 HOH HOH . D 3 HOH A 10 12 12 HOH HOH . D 3 HOH A 11 141 13 HOH HOH . D 3 HOH A 12 142 142 HOH HOH . D 3 HOH A 13 143 14 HOH HOH . D 3 HOH A 14 144 144 HOH HOH . D 3 HOH A 15 145 145 HOH HOH . D 3 HOH A 16 146 146 HOH HOH . D 3 HOH A 17 147 15 HOH HOH . D 3 HOH A 18 148 148 HOH HOH . D 3 HOH A 19 149 16 HOH HOH . D 3 HOH A 20 150 17 HOH HOH . D 3 HOH A 21 151 19 HOH HOH . D 3 HOH A 22 152 20 HOH HOH . D 3 HOH A 23 153 153 HOH HOH . D 3 HOH A 24 154 154 HOH HOH . D 3 HOH A 25 155 21 HOH HOH . D 3 HOH A 26 156 156 HOH HOH . D 3 HOH A 27 157 157 HOH HOH . D 3 HOH A 28 158 158 HOH HOH . D 3 HOH A 29 159 22 HOH HOH . D 3 HOH A 30 160 23 HOH HOH . D 3 HOH A 31 161 24 HOH HOH . D 3 HOH A 32 162 162 HOH HOH . D 3 HOH A 33 163 163 HOH HOH . D 3 HOH A 34 164 26 HOH HOH . D 3 HOH A 35 165 27 HOH HOH . D 3 HOH A 36 166 166 HOH HOH . D 3 HOH A 37 167 167 HOH HOH . D 3 HOH A 38 168 168 HOH HOH . D 3 HOH A 39 169 28 HOH HOH . D 3 HOH A 40 170 29 HOH HOH . D 3 HOH A 41 171 30 HOH HOH . D 3 HOH A 42 172 172 HOH HOH . D 3 HOH A 43 173 173 HOH HOH . D 3 HOH A 44 174 174 HOH HOH . D 3 HOH A 45 175 31 HOH HOH . D 3 HOH A 46 176 32 HOH HOH . D 3 HOH A 47 177 33 HOH HOH . D 3 HOH A 48 178 36 HOH HOH . D 3 HOH A 49 179 37 HOH HOH . D 3 HOH A 50 180 180 HOH HOH . D 3 HOH A 51 181 38 HOH HOH . D 3 HOH A 52 182 39 HOH HOH . D 3 HOH A 53 183 40 HOH HOH . D 3 HOH A 54 184 43 HOH HOH . D 3 HOH A 55 185 185 HOH HOH . D 3 HOH A 56 186 49 HOH HOH . D 3 HOH A 57 187 51 HOH HOH . D 3 HOH A 58 188 56 HOH HOH . D 3 HOH A 59 189 57 HOH HOH . D 3 HOH A 60 190 59 HOH HOH . D 3 HOH A 61 191 60 HOH HOH . D 3 HOH A 62 192 64 HOH HOH . D 3 HOH A 63 193 69 HOH HOH . D 3 HOH A 64 194 71 HOH HOH . D 3 HOH A 65 195 195 HOH HOH . D 3 HOH A 66 196 73 HOH HOH . D 3 HOH A 67 197 197 HOH HOH . D 3 HOH A 68 198 198 HOH HOH . D 3 HOH A 69 199 199 HOH HOH . D 3 HOH A 70 200 75 HOH HOH . D 3 HOH A 71 201 201 HOH HOH . D 3 HOH A 72 202 78 HOH HOH . D 3 HOH A 73 203 203 HOH HOH . D 3 HOH A 74 204 83 HOH HOH . D 3 HOH A 75 205 205 HOH HOH . D 3 HOH A 76 206 206 HOH HOH . D 3 HOH A 77 207 207 HOH HOH . D 3 HOH A 78 208 208 HOH HOH . D 3 HOH A 79 209 209 HOH HOH . D 3 HOH A 80 210 84 HOH HOH . D 3 HOH A 81 211 211 HOH HOH . D 3 HOH A 82 212 212 HOH HOH . D 3 HOH A 83 213 87 HOH HOH . D 3 HOH A 84 214 214 HOH HOH . D 3 HOH A 85 215 215 HOH HOH . D 3 HOH A 86 216 216 HOH HOH . D 3 HOH A 87 217 90 HOH HOH . D 3 HOH A 88 218 91 HOH HOH . D 3 HOH A 89 219 219 HOH HOH . D 3 HOH A 90 220 92 HOH HOH . D 3 HOH A 91 221 93 HOH HOH . D 3 HOH A 92 222 94 HOH HOH . D 3 HOH A 93 223 100 HOH HOH . D 3 HOH A 94 224 103 HOH HOH . D 3 HOH A 95 225 111 HOH HOH . D 3 HOH A 96 226 116 HOH HOH . D 3 HOH A 97 227 119 HOH HOH . D 3 HOH A 98 228 122 HOH HOH . D 3 HOH A 99 229 125 HOH HOH . D 3 HOH A 100 230 127 HOH HOH . D 3 HOH A 101 231 128 HOH HOH . D 3 HOH A 102 232 132 HOH HOH . D 3 HOH A 103 233 133 HOH HOH . D 3 HOH A 104 234 134 HOH HOH . D 3 HOH A 105 235 137 HOH HOH . D 3 HOH A 106 236 139 HOH HOH . D 3 HOH A 107 237 140 HOH HOH . D 3 HOH A 108 238 176 HOH HOH . D 3 HOH A 109 239 194 HOH HOH . E 3 HOH B 1 4 4 HOH HOH . E 3 HOH B 2 7 7 HOH HOH . E 3 HOH B 3 141 141 HOH HOH . E 3 HOH B 4 142 18 HOH HOH . E 3 HOH B 5 143 143 HOH HOH . E 3 HOH B 6 144 25 HOH HOH . E 3 HOH B 7 145 34 HOH HOH . E 3 HOH B 8 146 35 HOH HOH . E 3 HOH B 9 147 147 HOH HOH . E 3 HOH B 10 148 41 HOH HOH . E 3 HOH B 11 149 149 HOH HOH . E 3 HOH B 12 150 150 HOH HOH . E 3 HOH B 13 151 151 HOH HOH . E 3 HOH B 14 152 152 HOH HOH . E 3 HOH B 15 153 45 HOH HOH . E 3 HOH B 16 154 48 HOH HOH . E 3 HOH B 17 155 155 HOH HOH . E 3 HOH B 18 156 50 HOH HOH . E 3 HOH B 19 157 52 HOH HOH . E 3 HOH B 20 158 53 HOH HOH . E 3 HOH B 21 159 159 HOH HOH . E 3 HOH B 22 160 160 HOH HOH . E 3 HOH B 23 161 161 HOH HOH . E 3 HOH B 24 162 54 HOH HOH . E 3 HOH B 25 163 55 HOH HOH . E 3 HOH B 26 164 164 HOH HOH . E 3 HOH B 27 165 61 HOH HOH . E 3 HOH B 28 166 63 HOH HOH . E 3 HOH B 29 167 65 HOH HOH . E 3 HOH B 30 168 66 HOH HOH . E 3 HOH B 31 169 67 HOH HOH . E 3 HOH B 32 170 170 HOH HOH . E 3 HOH B 33 171 171 HOH HOH . E 3 HOH B 34 172 70 HOH HOH . E 3 HOH B 35 173 72 HOH HOH . E 3 HOH B 36 174 74 HOH HOH . E 3 HOH B 37 175 175 HOH HOH . E 3 HOH B 38 177 177 HOH HOH . E 3 HOH B 39 178 178 HOH HOH . E 3 HOH B 40 179 179 HOH HOH . E 3 HOH B 41 180 76 HOH HOH . E 3 HOH B 42 181 181 HOH HOH . E 3 HOH B 43 182 182 HOH HOH . E 3 HOH B 44 183 183 HOH HOH . E 3 HOH B 45 184 184 HOH HOH . E 3 HOH B 46 185 77 HOH HOH . E 3 HOH B 47 186 80 HOH HOH . E 3 HOH B 48 187 187 HOH HOH . E 3 HOH B 49 188 188 HOH HOH . E 3 HOH B 50 189 189 HOH HOH . E 3 HOH B 51 190 190 HOH HOH . E 3 HOH B 52 191 191 HOH HOH . E 3 HOH B 53 192 192 HOH HOH . E 3 HOH B 54 193 193 HOH HOH . E 3 HOH B 55 195 81 HOH HOH . E 3 HOH B 56 196 196 HOH HOH . E 3 HOH B 57 197 82 HOH HOH . E 3 HOH B 58 198 85 HOH HOH . E 3 HOH B 59 199 86 HOH HOH . E 3 HOH B 60 200 200 HOH HOH . E 3 HOH B 61 201 88 HOH HOH . E 3 HOH B 62 202 202 HOH HOH . E 3 HOH B 63 203 89 HOH HOH . E 3 HOH B 64 204 204 HOH HOH . E 3 HOH B 65 205 101 HOH HOH . E 3 HOH B 66 206 102 HOH HOH . E 3 HOH B 67 207 106 HOH HOH . E 3 HOH B 68 208 107 HOH HOH . E 3 HOH B 69 209 108 HOH HOH . E 3 HOH B 70 210 210 HOH HOH . E 3 HOH B 71 211 109 HOH HOH . E 3 HOH B 72 212 110 HOH HOH . E 3 HOH B 73 213 213 HOH HOH . E 3 HOH B 74 214 113 HOH HOH . E 3 HOH B 75 215 115 HOH HOH . E 3 HOH B 76 216 118 HOH HOH . E 3 HOH B 77 217 217 HOH HOH . E 3 HOH B 78 218 120 HOH HOH . E 3 HOH B 79 219 124 HOH HOH . E 3 HOH B 80 220 220 HOH HOH . E 3 HOH B 81 221 221 HOH HOH . E 3 HOH B 82 222 222 HOH HOH . E 3 HOH B 83 223 223 HOH HOH . E 3 HOH B 84 224 126 HOH HOH . E 3 HOH B 85 225 129 HOH HOH . E 3 HOH B 86 226 135 HOH HOH . E 3 HOH B 87 227 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 31.84 15.854 135.419 1 22.78 ? C1 GOL 1 B 1 HETATM 2 O O1 GOL . . . C 2 31.147 15.172 136.443 1 27.98 ? O1 GOL 1 B 1 HETATM 3 C C2 GOL . . . C 2 32.949 15.041 134.732 1 27.97 ? C2 GOL 1 B 1 HETATM 4 O O2 GOL . . . C 2 32.532 14.221 133.661 1 26.62 ? O2 GOL 1 B 1 HETATM 5 C C3 GOL . . . C 2 33.801 14.212 135.675 1 27 ? C3 GOL 1 B 1 HETATM 6 O O3 GOL . . . C 2 34.595 13.356 134.867 1 29.38 ? O3 GOL 1 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 6 #