data_3O5Q # _model_server_result.job_id B-osIpXiTaHm7mWWsUL2Jw _model_server_result.datetime_utc '2024-10-19 00:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3O5Q # _exptl.entry_id 3O5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O5Q _cell.length_a 42.396 _cell.length_b 53.514 _cell.length_c 56.381 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3O5Q _atom_sites.fract_transf_matrix[1][1] 0.023587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 1 1 DMS DMS . C 2 DMS A 1 2 2 DMS DMS . D 3 HOH A 1 3 3 HOH HOH . D 3 HOH A 2 4 4 HOH HOH . D 3 HOH A 3 5 5 HOH HOH . D 3 HOH A 4 6 6 HOH HOH . D 3 HOH A 5 7 7 HOH HOH . D 3 HOH A 6 8 8 HOH HOH . D 3 HOH A 7 9 9 HOH HOH . D 3 HOH A 8 10 10 HOH HOH . D 3 HOH A 9 11 11 HOH HOH . D 3 HOH A 10 12 12 HOH HOH . D 3 HOH A 11 141 141 HOH HOH . D 3 HOH A 12 142 142 HOH HOH . D 3 HOH A 13 143 143 HOH HOH . D 3 HOH A 14 144 144 HOH HOH . D 3 HOH A 15 145 145 HOH HOH . D 3 HOH A 16 146 146 HOH HOH . D 3 HOH A 17 147 147 HOH HOH . D 3 HOH A 18 148 148 HOH HOH . D 3 HOH A 19 149 149 HOH HOH . D 3 HOH A 20 150 150 HOH HOH . D 3 HOH A 21 151 151 HOH HOH . D 3 HOH A 22 152 152 HOH HOH . D 3 HOH A 23 153 153 HOH HOH . D 3 HOH A 24 154 154 HOH HOH . D 3 HOH A 25 155 155 HOH HOH . D 3 HOH A 26 156 156 HOH HOH . D 3 HOH A 27 157 157 HOH HOH . D 3 HOH A 28 158 158 HOH HOH . D 3 HOH A 29 159 159 HOH HOH . D 3 HOH A 30 160 160 HOH HOH . D 3 HOH A 31 161 161 HOH HOH . D 3 HOH A 32 162 162 HOH HOH . D 3 HOH A 33 163 163 HOH HOH . D 3 HOH A 34 164 164 HOH HOH . D 3 HOH A 35 165 165 HOH HOH . D 3 HOH A 36 166 166 HOH HOH . D 3 HOH A 37 167 167 HOH HOH . D 3 HOH A 38 168 168 HOH HOH . D 3 HOH A 39 169 169 HOH HOH . D 3 HOH A 40 170 170 HOH HOH . D 3 HOH A 41 171 171 HOH HOH . D 3 HOH A 42 172 172 HOH HOH . D 3 HOH A 43 173 173 HOH HOH . D 3 HOH A 44 174 174 HOH HOH . D 3 HOH A 45 175 175 HOH HOH . D 3 HOH A 46 176 176 HOH HOH . D 3 HOH A 47 177 177 HOH HOH . D 3 HOH A 48 178 178 HOH HOH . D 3 HOH A 49 179 179 HOH HOH . D 3 HOH A 50 180 180 HOH HOH . D 3 HOH A 51 181 181 HOH HOH . D 3 HOH A 52 182 182 HOH HOH . D 3 HOH A 53 183 183 HOH HOH . D 3 HOH A 54 184 184 HOH HOH . D 3 HOH A 55 185 185 HOH HOH . D 3 HOH A 56 186 186 HOH HOH . D 3 HOH A 57 187 187 HOH HOH . D 3 HOH A 58 188 188 HOH HOH . D 3 HOH A 59 189 189 HOH HOH . D 3 HOH A 60 190 190 HOH HOH . D 3 HOH A 61 191 191 HOH HOH . D 3 HOH A 62 192 192 HOH HOH . D 3 HOH A 63 193 193 HOH HOH . D 3 HOH A 64 194 194 HOH HOH . D 3 HOH A 65 195 195 HOH HOH . D 3 HOH A 66 196 196 HOH HOH . D 3 HOH A 67 197 197 HOH HOH . D 3 HOH A 68 198 198 HOH HOH . D 3 HOH A 69 199 199 HOH HOH . D 3 HOH A 70 200 200 HOH HOH . D 3 HOH A 71 201 201 HOH HOH . D 3 HOH A 72 202 202 HOH HOH . D 3 HOH A 73 203 203 HOH HOH . D 3 HOH A 74 204 204 HOH HOH . D 3 HOH A 75 205 205 HOH HOH . D 3 HOH A 76 206 206 HOH HOH . D 3 HOH A 77 207 207 HOH HOH . D 3 HOH A 78 208 208 HOH HOH . D 3 HOH A 79 209 209 HOH HOH . D 3 HOH A 80 210 210 HOH HOH . D 3 HOH A 81 211 211 HOH HOH . D 3 HOH A 82 212 212 HOH HOH . D 3 HOH A 83 213 213 HOH HOH . D 3 HOH A 84 214 214 HOH HOH . D 3 HOH A 85 215 215 HOH HOH . D 3 HOH A 86 216 216 HOH HOH . D 3 HOH A 87 217 217 HOH HOH . D 3 HOH A 88 218 218 HOH HOH . D 3 HOH A 89 219 219 HOH HOH . D 3 HOH A 90 220 220 HOH HOH . D 3 HOH A 91 221 221 HOH HOH . D 3 HOH A 92 222 222 HOH HOH . D 3 HOH A 93 223 223 HOH HOH . D 3 HOH A 94 224 224 HOH HOH . D 3 HOH A 95 225 225 HOH HOH . D 3 HOH A 96 226 226 HOH HOH . D 3 HOH A 97 227 227 HOH HOH . D 3 HOH A 98 228 228 HOH HOH . D 3 HOH A 99 229 229 HOH HOH . D 3 HOH A 100 230 230 HOH HOH . D 3 HOH A 101 231 231 HOH HOH . D 3 HOH A 102 232 232 HOH HOH . D 3 HOH A 103 233 233 HOH HOH . D 3 HOH A 104 234 234 HOH HOH . D 3 HOH A 105 235 235 HOH HOH . D 3 HOH A 106 236 236 HOH HOH . D 3 HOH A 107 237 237 HOH HOH . D 3 HOH A 108 238 238 HOH HOH . D 3 HOH A 109 239 239 HOH HOH . D 3 HOH A 110 240 240 HOH HOH . D 3 HOH A 111 241 241 HOH HOH . D 3 HOH A 112 242 242 HOH HOH . D 3 HOH A 113 243 243 HOH HOH . D 3 HOH A 114 244 244 HOH HOH . D 3 HOH A 115 245 245 HOH HOH . D 3 HOH A 116 246 246 HOH HOH . D 3 HOH A 117 247 247 HOH HOH . D 3 HOH A 118 248 248 HOH HOH . D 3 HOH A 119 249 249 HOH HOH . D 3 HOH A 120 250 250 HOH HOH . D 3 HOH A 121 251 251 HOH HOH . D 3 HOH A 122 252 252 HOH HOH . D 3 HOH A 123 253 253 HOH HOH . D 3 HOH A 124 254 254 HOH HOH . D 3 HOH A 125 255 1 HOH HOH . D 3 HOH A 126 256 2 HOH HOH . D 3 HOH A 127 257 13 HOH HOH . D 3 HOH A 128 258 14 HOH HOH . D 3 HOH A 129 259 15 HOH HOH . D 3 HOH A 130 260 16 HOH HOH . D 3 HOH A 131 261 17 HOH HOH . D 3 HOH A 132 262 18 HOH HOH . D 3 HOH A 133 263 19 HOH HOH . D 3 HOH A 134 264 20 HOH HOH . D 3 HOH A 135 265 21 HOH HOH . D 3 HOH A 136 266 22 HOH HOH . D 3 HOH A 137 267 23 HOH HOH . D 3 HOH A 138 268 25 HOH HOH . D 3 HOH A 139 269 27 HOH HOH . D 3 HOH A 140 270 28 HOH HOH . D 3 HOH A 141 271 29 HOH HOH . D 3 HOH A 142 272 30 HOH HOH . D 3 HOH A 143 273 31 HOH HOH . D 3 HOH A 144 274 32 HOH HOH . D 3 HOH A 145 275 33 HOH HOH . D 3 HOH A 146 276 35 HOH HOH . D 3 HOH A 147 277 36 HOH HOH . D 3 HOH A 148 278 37 HOH HOH . D 3 HOH A 149 279 38 HOH HOH . D 3 HOH A 150 280 39 HOH HOH . D 3 HOH A 151 281 40 HOH HOH . D 3 HOH A 152 282 41 HOH HOH . D 3 HOH A 153 283 42 HOH HOH . D 3 HOH A 154 284 43 HOH HOH . D 3 HOH A 155 285 44 HOH HOH . D 3 HOH A 156 286 45 HOH HOH . D 3 HOH A 157 287 46 HOH HOH . D 3 HOH A 158 288 47 HOH HOH . D 3 HOH A 159 289 48 HOH HOH . D 3 HOH A 160 290 49 HOH HOH . D 3 HOH A 161 291 50 HOH HOH . D 3 HOH A 162 292 51 HOH HOH . D 3 HOH A 163 293 52 HOH HOH . D 3 HOH A 164 294 53 HOH HOH . D 3 HOH A 165 295 54 HOH HOH . D 3 HOH A 166 296 55 HOH HOH . D 3 HOH A 167 297 57 HOH HOH . D 3 HOH A 168 298 58 HOH HOH . D 3 HOH A 169 299 59 HOH HOH . D 3 HOH A 170 300 60 HOH HOH . D 3 HOH A 171 301 61 HOH HOH . D 3 HOH A 172 302 62 HOH HOH . D 3 HOH A 173 303 63 HOH HOH . D 3 HOH A 174 304 65 HOH HOH . D 3 HOH A 175 305 66 HOH HOH . D 3 HOH A 176 306 67 HOH HOH . D 3 HOH A 177 307 68 HOH HOH . D 3 HOH A 178 308 69 HOH HOH . D 3 HOH A 179 309 70 HOH HOH . D 3 HOH A 180 310 71 HOH HOH . D 3 HOH A 181 311 72 HOH HOH . D 3 HOH A 182 312 73 HOH HOH . D 3 HOH A 183 313 74 HOH HOH . D 3 HOH A 184 314 75 HOH HOH . D 3 HOH A 185 315 76 HOH HOH . D 3 HOH A 186 316 77 HOH HOH . D 3 HOH A 187 317 79 HOH HOH . D 3 HOH A 188 318 80 HOH HOH . D 3 HOH A 189 319 81 HOH HOH . D 3 HOH A 190 320 82 HOH HOH . D 3 HOH A 191 321 84 HOH HOH . D 3 HOH A 192 322 85 HOH HOH . D 3 HOH A 193 323 86 HOH HOH . D 3 HOH A 194 324 87 HOH HOH . D 3 HOH A 195 325 88 HOH HOH . D 3 HOH A 196 326 89 HOH HOH . D 3 HOH A 197 327 90 HOH HOH . D 3 HOH A 198 328 92 HOH HOH . D 3 HOH A 199 329 93 HOH HOH . D 3 HOH A 200 330 94 HOH HOH . D 3 HOH A 201 331 95 HOH HOH . D 3 HOH A 202 332 96 HOH HOH . D 3 HOH A 203 333 97 HOH HOH . D 3 HOH A 204 334 98 HOH HOH . D 3 HOH A 205 335 99 HOH HOH . D 3 HOH A 206 336 101 HOH HOH . D 3 HOH A 207 337 102 HOH HOH . D 3 HOH A 208 338 103 HOH HOH . D 3 HOH A 209 339 104 HOH HOH . D 3 HOH A 210 340 105 HOH HOH . D 3 HOH A 211 341 107 HOH HOH . D 3 HOH A 212 342 109 HOH HOH . D 3 HOH A 213 343 110 HOH HOH . D 3 HOH A 214 344 111 HOH HOH . D 3 HOH A 215 345 112 HOH HOH . D 3 HOH A 216 346 113 HOH HOH . D 3 HOH A 217 347 114 HOH HOH . D 3 HOH A 218 348 115 HOH HOH . D 3 HOH A 219 349 116 HOH HOH . D 3 HOH A 220 350 117 HOH HOH . D 3 HOH A 221 351 118 HOH HOH . D 3 HOH A 222 352 119 HOH HOH . D 3 HOH A 223 353 120 HOH HOH . D 3 HOH A 224 354 121 HOH HOH . D 3 HOH A 225 355 122 HOH HOH . D 3 HOH A 226 356 123 HOH HOH . D 3 HOH A 227 357 124 HOH HOH . D 3 HOH A 228 358 125 HOH HOH . D 3 HOH A 229 359 126 HOH HOH . D 3 HOH A 230 360 127 HOH HOH . D 3 HOH A 231 361 128 HOH HOH . D 3 HOH A 232 362 129 HOH HOH . D 3 HOH A 233 363 130 HOH HOH . D 3 HOH A 234 364 131 HOH HOH . D 3 HOH A 235 365 133 HOH HOH . D 3 HOH A 236 366 134 HOH HOH . D 3 HOH A 237 367 135 HOH HOH . D 3 HOH A 238 368 136 HOH HOH . D 3 HOH A 239 369 137 HOH HOH . D 3 HOH A 240 370 138 HOH HOH . D 3 HOH A 241 371 139 HOH HOH . D 3 HOH A 242 372 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . C 2 10.186 -14.415 -15.955 0.55 12.88 ? S DMS 2 A 1 HETATM 2 S S DMS . B . C 2 10.333 -14.152 -17.031 0.45 12.35 ? S DMS 2 A 1 HETATM 3 O O DMS . A . C 2 11.689 -13.908 -16.755 0.55 11.5 ? O DMS 2 A 1 HETATM 4 O O DMS . B . C 2 11.932 -13.943 -16.335 0.45 12.38 ? O DMS 2 A 1 HETATM 5 C C1 DMS . A . C 2 8.857 -13.2 -16.147 0.55 14.11 ? C1 DMS 2 A 1 HETATM 6 C C1 DMS . B . C 2 9.708 -15.605 -16.156 0.45 12.1 ? C1 DMS 2 A 1 HETATM 7 C C2 DMS . A . C 2 9.543 -15.698 -17.061 0.55 14.8 ? C2 DMS 2 A 1 HETATM 8 C C2 DMS . B . C 2 9.387 -12.882 -16.181 0.45 11.45 ? C2 DMS 2 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #