data_3O5Z # _model_server_result.job_id bUQo1huwyJyAY1KFW5sHzw _model_server_result.datetime_utc '2025-07-30 14:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":87}' # _entry.id 3O5Z # _exptl.entry_id 3O5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O5Z _cell.length_a 46.01 _cell.length_b 57.79 _cell.length_c 62.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 55 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 55 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 50 _struct_conn.ptnr2_symmetry 3_655 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.107 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 171 n n C1 H11 MPD sing 172 n n C1 H12 MPD sing 173 n n C1 H13 MPD sing 174 n n C2 O2 MPD sing 175 n n C2 CM MPD sing 176 n n C2 C3 MPD sing 177 n n O2 HO2 MPD sing 178 n n CM HM1 MPD sing 179 n n CM HM2 MPD sing 180 n n CM HM3 MPD sing 181 n n C3 C4 MPD sing 182 n n C3 H31 MPD sing 183 n n C3 H32 MPD sing 184 n n C4 O4 MPD sing 185 n n C4 C5 MPD sing 186 n n C4 H4 MPD sing 187 n n O4 HO4 MPD sing 188 n n C5 H51 MPD sing 189 n n C5 H52 MPD sing 190 n n C5 H53 MPD sing 191 n n # _atom_sites.entry_id 3O5Z _atom_sites.fract_transf_matrix[1][1] 0.021734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 86 1 CL CL . D 2 CL B 1 86 2 CL CL . E 3 MPD B 1 87 1 MPD MPD . F 4 HOH A 1 87 1 HOH HOH . F 4 HOH A 2 88 2 HOH HOH . F 4 HOH A 3 89 4 HOH HOH . F 4 HOH A 4 90 5 HOH HOH . F 4 HOH A 5 91 6 HOH HOH . F 4 HOH A 6 92 7 HOH HOH . F 4 HOH A 7 93 11 HOH HOH . F 4 HOH A 8 94 13 HOH HOH . F 4 HOH A 9 95 14 HOH HOH . F 4 HOH A 10 96 15 HOH HOH . F 4 HOH A 11 97 16 HOH HOH . F 4 HOH A 12 98 19 HOH HOH . F 4 HOH A 13 99 20 HOH HOH . F 4 HOH A 14 100 21 HOH HOH . G 4 HOH B 1 88 3 HOH HOH . G 4 HOH B 2 89 8 HOH HOH . G 4 HOH B 3 90 9 HOH HOH . G 4 HOH B 4 91 10 HOH HOH . G 4 HOH B 5 92 12 HOH HOH . G 4 HOH B 6 93 17 HOH HOH . G 4 HOH B 7 94 18 HOH HOH . G 4 HOH B 8 95 22 HOH HOH . G 4 HOH B 9 96 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 3 41.771 4.739 19.814 1 73.02 ? C1 MPD 87 B 1 HETATM 2 C C2 MPD . . . E 3 40.819 4.842 18.622 1 73.29 ? C2 MPD 87 B 1 HETATM 3 O O2 MPD . . . E 3 40.598 3.478 18.217 1 71.53 ? O2 MPD 87 B 1 HETATM 4 C CM MPD . . . E 3 39.461 5.382 19.062 1 73.02 ? CM MPD 87 B 1 HETATM 5 C C3 MPD . . . E 3 41.389 5.693 17.473 1 71.93 ? C3 MPD 87 B 1 HETATM 6 C C4 MPD . . . E 3 40.87 7.145 17.581 1 73.05 ? C4 MPD 87 B 1 HETATM 7 O O4 MPD . . . E 3 41.743 7.934 18.368 1 72.35 ? O4 MPD 87 B 1 HETATM 8 C C5 MPD . . . E 3 40.615 7.836 16.228 1 73.72 ? C5 MPD 87 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #