data_3O65 # _model_server_result.job_id YPtfIT6SzH73HBlkHrAIbQ _model_server_result.datetime_utc '2024-11-22 08:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":192}' # _entry.id 3O65 # _exptl.entry_id 3O65 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O65 _cell.length_a 159.15 _cell.length_b 159.15 _cell.length_c 146.29 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA 24-meric 24 software_defined_assembly 5 PISA hexameric 6 software_defined_assembly 6 PISA dodecameric 12 software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K 1 1 C,D,L,M 2 1 E,F,N 3 1 G,H 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 5 1,2,3 A,B,C,D,E,F,I,J,K,L,M,N 6 1 A,C,E,G,I,J,L,N 7 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 79.575 137.827943 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -79.575 137.827943 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 1 1_555 A N MSE 2 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 2 A MSE 2 1_555 A N ASP 3 A ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A SG CYS 15 A CYS 15 1_555 B CB NEH 76 B NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale4 A C ARG 46 A ARG 46 1_555 A N MSE 47 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C MSE 47 A MSE 47 1_555 A N ARG 48 A ARG 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C ARG 48 A ARG 48 1_555 A N MSE 49 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 49 A MSE 49 1_555 A N ALA 50 A ALA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C ASN 69 A ASN 69 1_555 A N MSE 70 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MSE 70 A MSE 70 1_555 A N ASP 71 A ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale10 B C GLY 75 B GLY 75 1_555 B N NEH 76 B NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 C C GLY 1 C GLY 1 1_555 C N MSE 2 C MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 C C MSE 2 C MSE 2 1_555 C N ASP 3 C ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale13 C SG CYS 15 C CYS 15 1_555 D CB NEH 76 D NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale14 C C ARG 46 C ARG 46 1_555 C N MSE 47 C MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 C C MSE 47 C MSE 47 1_555 C N ARG 48 C ARG 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 C C ARG 48 C ARG 48 1_555 C N MSE 49 C MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 C C MSE 49 C MSE 49 1_555 C N ALA 50 C ALA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 C C ASN 69 C ASN 69 1_555 C N MSE 70 C MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale19 C C MSE 70 C MSE 70 1_555 C N ASP 71 C ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 D C GLY 75 D GLY 75 1_555 D N NEH 76 D NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale21 E C GLY 1 E GLY 1 1_555 E N MSE 2 E MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 E C MSE 2 E MSE 2 1_555 E N ASP 3 E ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 E SG CYS 15 E CYS 15 1_555 F CB NEH 76 F NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale24 E C ARG 46 E ARG 46 1_555 E N MSE 47 E MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 E C MSE 47 E MSE 47 1_555 E N ARG 48 E ARG 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 E C ARG 48 E ARG 48 1_555 E N MSE 49 E MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 E C MSE 49 E MSE 49 1_555 E N ALA 50 E ALA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 E C ASN 69 E ASN 69 1_555 E N MSE 70 E MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale29 E C MSE 70 E MSE 70 1_555 E N ASP 71 E ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale30 E C GLU 186 E GLU 186 1_555 E N MSE 187 E MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 F C GLY 75 F GLY 75 1_555 F N NEH 76 F NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale32 G C GLY 1 G GLY 1 1_555 G N MSE 2 G MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 G C MSE 2 G MSE 2 1_555 G N ASP 3 G ASP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 G SG CYS 15 G CYS 15 1_555 H CB NEH 76 H NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale35 G C ARG 46 G ARG 46 1_555 G N MSE 47 G MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale36 G C MSE 47 G MSE 47 1_555 G N ARG 48 G ARG 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale37 G C ARG 48 G ARG 48 1_555 G N MSE 49 G MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale38 G C MSE 49 G MSE 49 1_555 G N ALA 50 G ALA 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale39 G C ASN 69 G ASN 69 1_555 G N MSE 70 G MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale40 G C MSE 70 G MSE 70 1_555 G N ASP 71 G ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale41 H C GLY 75 H GLY 75 1_555 H N NEH 76 H NEH 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O LEU 156 A LEU 156 1_555 I NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc2 A O TYR 161 A TYR 161 1_555 I NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O65 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NA A 1 192 192 NA NA . J 4 HOH A 1 193 193 HOH HOH . J 4 HOH A 2 194 194 HOH HOH . J 4 HOH A 3 195 195 HOH HOH . J 4 HOH A 4 196 196 HOH HOH . J 4 HOH A 5 197 197 HOH HOH . J 4 HOH A 6 198 198 HOH HOH . J 4 HOH A 7 199 199 HOH HOH . J 4 HOH A 8 200 200 HOH HOH . J 4 HOH A 9 201 201 HOH HOH . J 4 HOH A 10 202 202 HOH HOH . J 4 HOH A 11 203 203 HOH HOH . J 4 HOH A 12 204 204 HOH HOH . J 4 HOH A 13 205 205 HOH HOH . J 4 HOH A 14 206 206 HOH HOH . J 4 HOH A 15 207 207 HOH HOH . J 4 HOH A 16 208 208 HOH HOH . J 4 HOH A 17 209 209 HOH HOH . J 4 HOH A 18 210 210 HOH HOH . J 4 HOH A 19 211 211 HOH HOH . J 4 HOH A 20 212 212 HOH HOH . J 4 HOH A 21 213 213 HOH HOH . J 4 HOH A 22 214 214 HOH HOH . J 4 HOH A 23 215 215 HOH HOH . J 4 HOH A 24 216 216 HOH HOH . J 4 HOH A 25 217 217 HOH HOH . J 4 HOH A 26 218 218 HOH HOH . J 4 HOH A 27 219 219 HOH HOH . J 4 HOH A 28 220 220 HOH HOH . J 4 HOH A 29 221 221 HOH HOH . J 4 HOH A 30 222 222 HOH HOH . J 4 HOH A 31 223 223 HOH HOH . J 4 HOH A 32 224 224 HOH HOH . J 4 HOH A 33 225 225 HOH HOH . J 4 HOH A 34 226 226 HOH HOH . J 4 HOH A 35 227 227 HOH HOH . J 4 HOH A 36 228 228 HOH HOH . J 4 HOH A 37 229 229 HOH HOH . J 4 HOH A 38 230 230 HOH HOH . J 4 HOH A 39 231 231 HOH HOH . J 4 HOH A 40 232 232 HOH HOH . J 4 HOH A 41 233 233 HOH HOH . J 4 HOH A 42 234 234 HOH HOH . J 4 HOH A 43 235 235 HOH HOH . J 4 HOH A 44 236 236 HOH HOH . J 4 HOH A 45 237 237 HOH HOH . J 4 HOH A 46 238 238 HOH HOH . J 4 HOH A 47 239 239 HOH HOH . J 4 HOH A 48 240 240 HOH HOH . J 4 HOH A 49 241 241 HOH HOH . J 4 HOH A 50 242 242 HOH HOH . J 4 HOH A 51 243 243 HOH HOH . J 4 HOH A 52 244 244 HOH HOH . J 4 HOH A 53 245 245 HOH HOH . J 4 HOH A 54 246 246 HOH HOH . J 4 HOH A 55 247 247 HOH HOH . J 4 HOH A 56 248 248 HOH HOH . J 4 HOH A 57 249 249 HOH HOH . J 4 HOH A 58 250 250 HOH HOH . J 4 HOH A 59 251 251 HOH HOH . J 4 HOH A 60 252 252 HOH HOH . J 4 HOH A 61 253 253 HOH HOH . J 4 HOH A 62 254 254 HOH HOH . J 4 HOH A 63 255 255 HOH HOH . J 4 HOH A 64 256 256 HOH HOH . J 4 HOH A 65 257 257 HOH HOH . J 4 HOH A 66 258 258 HOH HOH . J 4 HOH A 67 259 259 HOH HOH . J 4 HOH A 68 260 260 HOH HOH . J 4 HOH A 69 261 261 HOH HOH . J 4 HOH A 70 262 262 HOH HOH . J 4 HOH A 71 263 263 HOH HOH . J 4 HOH A 72 264 264 HOH HOH . J 4 HOH A 73 265 265 HOH HOH . J 4 HOH A 74 266 266 HOH HOH . J 4 HOH A 75 267 267 HOH HOH . J 4 HOH A 76 268 268 HOH HOH . J 4 HOH A 77 269 269 HOH HOH . J 4 HOH A 78 270 270 HOH HOH . J 4 HOH A 79 271 271 HOH HOH . K 4 HOH B 1 77 77 HOH HOH . K 4 HOH B 2 78 78 HOH HOH . K 4 HOH B 3 79 79 HOH HOH . K 4 HOH B 4 80 80 HOH HOH . K 4 HOH B 5 81 81 HOH HOH . K 4 HOH B 6 82 82 HOH HOH . K 4 HOH B 7 86 86 HOH HOH . K 4 HOH B 8 90 90 HOH HOH . K 4 HOH B 9 93 93 HOH HOH . K 4 HOH B 10 99 99 HOH HOH . K 4 HOH B 11 101 101 HOH HOH . K 4 HOH B 12 110 110 HOH HOH . K 4 HOH B 13 111 111 HOH HOH . K 4 HOH B 14 115 115 HOH HOH . K 4 HOH B 15 135 135 HOH HOH . K 4 HOH B 16 140 140 HOH HOH . K 4 HOH B 17 144 144 HOH HOH . K 4 HOH B 18 145 145 HOH HOH . L 4 HOH C 1 192 192 HOH HOH . L 4 HOH C 2 193 193 HOH HOH . L 4 HOH C 3 194 194 HOH HOH . L 4 HOH C 4 195 195 HOH HOH . L 4 HOH C 5 196 196 HOH HOH . L 4 HOH C 6 197 197 HOH HOH . L 4 HOH C 7 198 198 HOH HOH . L 4 HOH C 8 199 199 HOH HOH . L 4 HOH C 9 200 200 HOH HOH . L 4 HOH C 10 201 201 HOH HOH . L 4 HOH C 11 202 202 HOH HOH . L 4 HOH C 12 203 203 HOH HOH . L 4 HOH C 13 204 204 HOH HOH . L 4 HOH C 14 205 205 HOH HOH . L 4 HOH C 15 206 206 HOH HOH . L 4 HOH C 16 207 207 HOH HOH . L 4 HOH C 17 208 208 HOH HOH . L 4 HOH C 18 209 209 HOH HOH . L 4 HOH C 19 210 210 HOH HOH . L 4 HOH C 20 211 211 HOH HOH . L 4 HOH C 21 212 212 HOH HOH . L 4 HOH C 22 213 213 HOH HOH . L 4 HOH C 23 214 214 HOH HOH . L 4 HOH C 24 215 215 HOH HOH . L 4 HOH C 25 216 216 HOH HOH . L 4 HOH C 26 217 217 HOH HOH . L 4 HOH C 27 218 218 HOH HOH . L 4 HOH C 28 219 219 HOH HOH . L 4 HOH C 29 220 220 HOH HOH . L 4 HOH C 30 221 221 HOH HOH . L 4 HOH C 31 222 222 HOH HOH . L 4 HOH C 32 223 223 HOH HOH . L 4 HOH C 33 224 224 HOH HOH . M 4 HOH D 1 77 77 HOH HOH . M 4 HOH D 2 78 78 HOH HOH . M 4 HOH D 3 79 79 HOH HOH . M 4 HOH D 4 80 80 HOH HOH . M 4 HOH D 5 81 81 HOH HOH . M 4 HOH D 6 82 82 HOH HOH . M 4 HOH D 7 83 83 HOH HOH . M 4 HOH D 8 109 109 HOH HOH . M 4 HOH D 9 123 123 HOH HOH . M 4 HOH D 10 129 129 HOH HOH . M 4 HOH D 11 143 143 HOH HOH . N 4 HOH E 1 192 192 HOH HOH . N 4 HOH E 2 193 193 HOH HOH . N 4 HOH E 3 194 194 HOH HOH . N 4 HOH E 4 195 195 HOH HOH . N 4 HOH E 5 196 196 HOH HOH . N 4 HOH E 6 197 197 HOH HOH . N 4 HOH E 7 198 198 HOH HOH . N 4 HOH E 8 199 199 HOH HOH . N 4 HOH E 9 200 200 HOH HOH . N 4 HOH E 10 201 201 HOH HOH . N 4 HOH E 11 202 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.255 _atom_site.Cartn_y 84.512 _atom_site.Cartn_z 17.341 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 192 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #