data_3O6J # _model_server_result.job_id ctD1KsHgns18dMzViXt2jA _model_server_result.datetime_utc '2024-11-24 23:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3O6J # _exptl.entry_id 3O6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 620.838 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O6J _cell.length_a 90.18 _cell.length_b 90.18 _cell.length_c 305.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 134 A TYR 134 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc2 A NE2 HIS 194 A HIS 194 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 E O2 HQN . A HQN 258 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 B OH TYR 134 B TYR 134 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? metalc ? metalc6 B NE2 HIS 194 B HIS 194 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 B NE2 HIS 196 B HIS 196 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? # _chem_comp.formula 'C33 H65 O8 P' _chem_comp.formula_weight 620.838 _chem_comp.id MYY _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 C37 MYY sing 252 n n C38 H381 MYY sing 253 n n C38 H382 MYY sing 254 n n C38 H383 MYY sing 255 n n C37 C36 MYY sing 256 n n C37 H371 MYY sing 257 n n C37 H372 MYY sing 258 n n C36 C35 MYY sing 259 n n C36 H361 MYY sing 260 n n C36 H362 MYY sing 261 n n C35 C34 MYY sing 262 n n C35 H351 MYY sing 263 n n C35 H352 MYY sing 264 n n C34 C33 MYY sing 265 n n C34 H341 MYY sing 266 n n C34 H342 MYY sing 267 n n C33 C32 MYY sing 268 n n C33 H331 MYY sing 269 n n C33 H332 MYY sing 270 n n C32 C31 MYY sing 271 n n C32 H321 MYY sing 272 n n C32 H322 MYY sing 273 n n C31 C30 MYY sing 274 n n C31 H311 MYY sing 275 n n C31 H312 MYY sing 276 n n C30 C29 MYY sing 277 n n C30 H301 MYY sing 278 n n C30 H302 MYY sing 279 n n C29 C28 MYY sing 280 n n C29 H291 MYY sing 281 n n C29 H292 MYY sing 282 n n C28 C27 MYY sing 283 n n C28 H281 MYY sing 284 n n C28 H282 MYY sing 285 n n C27 C26 MYY sing 286 n n C27 H271 MYY sing 287 n n C27 H272 MYY sing 288 n n C26 C25 MYY sing 289 n n C26 H261 MYY sing 290 n n C26 H262 MYY sing 291 n n C25 C24 MYY sing 292 n n C25 H251 MYY sing 293 n n C25 H252 MYY sing 294 n n C24 C23 MYY sing 295 n n C24 H241 MYY sing 296 n n C24 H242 MYY sing 297 n n C23 O10 MYY doub 298 n n C23 O8 MYY sing 299 n n O8 C6 MYY sing 300 n n C6 C5 MYY sing 301 n n C6 H6C1 MYY sing 302 n n C6 H6C2 MYY sing 303 n n C5 C4 MYY sing 304 n n C5 O7 MYY sing 305 n n C5 H5 MYY sing 306 n n C4 O6 MYY sing 307 n n C4 H4C1 MYY sing 308 n n C4 H4C2 MYY sing 309 n n O6 P MYY sing 310 n n P O4 MYY sing 311 n n P O3 MYY sing 312 n n P O5 MYY doub 313 n n O4 H4 MYY sing 314 n n O3 H3 MYY sing 315 n n O7 C7 MYY sing 316 n n C7 O9 MYY doub 317 n n C7 C8 MYY sing 318 n n C8 C9 MYY sing 319 n n C8 H8C1 MYY sing 320 n n C8 H8C2 MYY sing 321 n n C9 C10 MYY sing 322 n n C9 H9C1 MYY sing 323 n n C9 H9C2 MYY sing 324 n n C10 C11 MYY sing 325 n n C10 H101 MYY sing 326 n n C10 H102 MYY sing 327 n n C11 C12 MYY sing 328 n n C11 H111 MYY sing 329 n n C11 H112 MYY sing 330 n n C12 C13 MYY sing 331 n n C12 H121 MYY sing 332 n n C12 H122 MYY sing 333 n n C13 C14 MYY sing 334 n n C13 H131 MYY sing 335 n n C13 H132 MYY sing 336 n n C14 C15 MYY sing 337 n n C14 H141 MYY sing 338 n n C14 H142 MYY sing 339 n n C15 C16 MYY sing 340 n n C15 H151 MYY sing 341 n n C15 H152 MYY sing 342 n n C16 C17 MYY sing 343 n n C16 H161 MYY sing 344 n n C16 H162 MYY sing 345 n n C17 C18 MYY sing 346 n n C17 H171 MYY sing 347 n n C17 H172 MYY sing 348 n n C18 C19 MYY sing 349 n n C18 H181 MYY sing 350 n n C18 H182 MYY sing 351 n n C19 C20 MYY sing 352 n n C19 H191 MYY sing 353 n n C19 H192 MYY sing 354 n n C20 H201 MYY sing 355 n n C20 H202 MYY sing 356 n n C20 H203 MYY sing 357 n n # _atom_sites.entry_id 3O6J _atom_sites.fract_transf_matrix[1][1] 0.011089 _atom_sites.fract_transf_matrix[1][2] 0.006402 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 300 300 FE FE . D 3 MYY A 1 304 304 MYY MYY . E 4 HQN A 1 258 1 HQN HQN . F 5 CL A 1 259 1 CL CL . G 2 FE B 1 301 301 FE FE . H 3 MYY B 1 303 303 MYY MYY . I 6 HOH A 1 260 2 HOH HOH . I 6 HOH A 2 261 4 HOH HOH . I 6 HOH A 3 262 5 HOH HOH . I 6 HOH A 4 263 6 HOH HOH . I 6 HOH A 5 264 7 HOH HOH . I 6 HOH A 6 265 8 HOH HOH . I 6 HOH A 7 266 9 HOH HOH . I 6 HOH A 8 267 10 HOH HOH . I 6 HOH A 9 268 11 HOH HOH . I 6 HOH A 10 269 12 HOH HOH . I 6 HOH A 11 270 14 HOH HOH . I 6 HOH A 12 271 15 HOH HOH . I 6 HOH A 13 272 16 HOH HOH . I 6 HOH A 14 273 17 HOH HOH . I 6 HOH A 15 274 18 HOH HOH . I 6 HOH A 16 275 19 HOH HOH . I 6 HOH A 17 276 20 HOH HOH . I 6 HOH A 18 277 21 HOH HOH . I 6 HOH A 19 278 22 HOH HOH . I 6 HOH A 20 279 23 HOH HOH . I 6 HOH A 21 280 25 HOH HOH . I 6 HOH A 22 281 26 HOH HOH . J 6 HOH B 1 258 1 HOH HOH . J 6 HOH B 2 259 3 HOH HOH . J 6 HOH B 3 260 13 HOH HOH . J 6 HOH B 4 261 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C38 MYY . . . H 3 30.175 63.75 275.792 1 53.13 ? C38 MYY 303 B 1 HETATM 2 C C37 MYY . . . H 3 31.597 63.418 276.216 1 51.12 ? C37 MYY 303 B 1 HETATM 3 C C36 MYY . . . H 3 32.047 62.109 275.599 1 48.76 ? C36 MYY 303 B 1 HETATM 4 C C35 MYY . . . H 3 32.601 61.155 276.662 1 48.25 ? C35 MYY 303 B 1 HETATM 5 C C34 MYY . . . H 3 33.861 60.525 276.068 1 47.77 ? C34 MYY 303 B 1 HETATM 6 C C33 MYY . . . H 3 34.486 59.42 276.897 1 44.5 ? C33 MYY 303 B 1 HETATM 7 C C32 MYY . . . H 3 35.943 59.308 276.491 1 42.49 ? C32 MYY 303 B 1 HETATM 8 C C31 MYY . . . H 3 36.505 57.965 276.883 1 43.68 ? C31 MYY 303 B 1 HETATM 9 C C30 MYY . . . H 3 37.242 58.047 278.185 1 44.6 ? C30 MYY 303 B 1 HETATM 10 C C29 MYY . . . H 3 38.571 57.339 278.049 1 48.72 ? C29 MYY 303 B 1 HETATM 11 C C28 MYY . . . H 3 39.068 56.814 279.393 1 50.34 ? C28 MYY 303 B 1 HETATM 12 C C27 MYY . . . H 3 40.467 56.28 279.206 1 54.09 ? C27 MYY 303 B 1 HETATM 13 C C26 MYY . . . H 3 40.602 54.846 279.712 1 58.48 ? C26 MYY 303 B 1 HETATM 14 C C25 MYY . . . H 3 41.664 54.788 280.804 1 62.1 ? C25 MYY 303 B 1 HETATM 15 C C24 MYY . . . H 3 42.809 53.859 280.442 1 68.13 ? C24 MYY 303 B 1 HETATM 16 C C23 MYY . . . H 3 42.429 52.487 280.937 1 72.24 ? C23 MYY 303 B 1 HETATM 17 O O10 MYY . . . H 3 41.272 52.312 281.281 1 71.07 ? O10 MYY 303 B 1 HETATM 18 O O8 MYY . . . H 3 43.387 51.351 280.975 1 75.57 ? O8 MYY 303 B 1 HETATM 19 C C6 MYY . . . H 3 44.498 51.575 281.87 1 79.26 ? C6 MYY 303 B 1 HETATM 20 C C5 MYY . . . H 3 45.838 51.132 281.241 1 83.88 ? C5 MYY 303 B 1 HETATM 21 C C4 MYY . . . H 3 46.517 50.032 282.11 1 87.15 ? C4 MYY 303 B 1 HETATM 22 O O6 MYY . . . H 3 47.566 50.562 282.958 1 90.88 ? O6 MYY 303 B 1 HETATM 23 P P MYY . . . H 3 49.05 50.052 282.501 1 92.41 ? P MYY 303 B 1 HETATM 24 O O7 MYY . . . H 3 46.69 52.291 281.063 1 83.02 ? O7 MYY 303 B 1 HETATM 25 C C7 MYY . . . H 3 47.263 52.512 279.718 1 80.22 ? C7 MYY 303 B 1 HETATM 26 O O9 MYY . . . H 3 48.463 52.324 279.575 1 80.91 ? O9 MYY 303 B 1 HETATM 27 C C8 MYY . . . H 3 46.414 53.031 278.553 1 77.17 ? C8 MYY 303 B 1 HETATM 28 C C9 MYY . . . H 3 46.628 54.541 278.327 1 73 ? C9 MYY 303 B 1 HETATM 29 C C10 MYY . . . H 3 45.355 55.221 277.793 1 69.28 ? C10 MYY 303 B 1 HETATM 30 C C11 MYY . . . H 3 45.326 56.756 277.979 1 66.24 ? C11 MYY 303 B 1 HETATM 31 C C12 MYY . . . H 3 43.895 57.288 278.282 1 65.27 ? C12 MYY 303 B 1 HETATM 32 C C13 MYY . . . H 3 43.669 58.753 277.833 1 66.8 ? C13 MYY 303 B 1 HETATM 33 C C14 MYY . . . H 3 42.184 59.237 277.801 1 67.37 ? C14 MYY 303 B 1 HETATM 34 C C15 MYY . . . H 3 41.898 60.419 276.759 1 66.09 ? C15 MYY 303 B 1 HETATM 35 C C16 MYY . . . H 3 40.357 60.585 276.438 1 63.76 ? C16 MYY 303 B 1 HETATM 36 C C17 MYY . . . H 3 39.895 61.221 275.034 1 57.94 ? C17 MYY 303 B 1 HETATM 37 C C18 MYY . . . H 3 40.697 60.78 273.775 1 62.21 ? C18 MYY 303 B 1 HETATM 38 C C19 MYY . . . H 3 39.81 60.578 272.51 1 60.19 ? C19 MYY 303 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #