data_3O6R # _model_server_result.job_id tiPBxPYhIB5D8QoxULq2hQ _model_server_result.datetime_utc '2024-11-25 02:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":258}' # _entry.id 3O6R # _exptl.entry_id 3O6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.11 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZENE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O6R _cell.length_a 89.65 _cell.length_b 89.65 _cell.length_c 312.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 134 A TYR 134 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc2 A NE2 HIS 194 A HIS 194 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc4 F O2 PYG . A PYG 258 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc5 F O1 PYG . A PYG 258 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 B NE2 HIS 194 B HIS 194 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B NE2 HIS 196 B HIS 196 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 H O3 PYG . B PYG 258 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc9 H O2 PYG . B PYG 258 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C6 H6 O3' _chem_comp.formula_weight 126.11 _chem_comp.id PYG _chem_comp.mon_nstd_flag . _chem_comp.name BENZENE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PYROGALLOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PYG doub 383 n y C1 C6 PYG sing 384 n y C1 O1 PYG sing 385 n n C2 C3 PYG sing 386 n y C2 O2 PYG sing 387 n n C3 C4 PYG doub 388 n y C3 O3 PYG sing 389 n n C4 C5 PYG sing 390 n y C4 H4 PYG sing 391 n n C5 C6 PYG doub 392 n y C5 H5 PYG sing 393 n n C6 H6 PYG sing 394 n n O1 HO1 PYG sing 395 n n O2 HO2 PYG sing 396 n n O3 HO3 PYG sing 397 n n # _atom_sites.entry_id 3O6R _atom_sites.fract_transf_matrix[1][1] 0.011154 _atom_sites.fract_transf_matrix[1][2] 0.00644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 300 300 FE FE . D 3 MYY A 1 304 304 MYY MYY . E 3 MYY A 1 303 303 MYY MYY . F 4 PYG A 1 258 1 PYG PYG . G 2 FE B 1 301 301 FE FE . H 4 PYG B 1 258 1 PYG PYG . I 5 HOH A 1 259 1 HOH HOH . I 5 HOH A 2 260 2 HOH HOH . I 5 HOH A 3 261 4 HOH HOH . I 5 HOH A 4 262 5 HOH HOH . I 5 HOH A 5 263 6 HOH HOH . I 5 HOH A 6 264 9 HOH HOH . I 5 HOH A 7 265 11 HOH HOH . I 5 HOH A 8 266 13 HOH HOH . I 5 HOH A 9 267 15 HOH HOH . I 5 HOH A 10 268 16 HOH HOH . I 5 HOH A 11 269 17 HOH HOH . I 5 HOH A 12 270 18 HOH HOH . I 5 HOH A 13 271 19 HOH HOH . I 5 HOH A 14 272 21 HOH HOH . I 5 HOH A 15 273 22 HOH HOH . I 5 HOH A 16 274 23 HOH HOH . I 5 HOH A 17 275 24 HOH HOH . I 5 HOH A 18 276 25 HOH HOH . I 5 HOH A 19 277 28 HOH HOH . I 5 HOH A 20 278 29 HOH HOH . I 5 HOH A 21 279 30 HOH HOH . I 5 HOH A 22 280 31 HOH HOH . I 5 HOH A 23 281 32 HOH HOH . I 5 HOH A 24 282 33 HOH HOH . I 5 HOH A 25 283 34 HOH HOH . I 5 HOH A 26 284 36 HOH HOH . I 5 HOH A 27 285 37 HOH HOH . I 5 HOH A 28 286 38 HOH HOH . I 5 HOH A 29 287 39 HOH HOH . I 5 HOH A 30 288 40 HOH HOH . I 5 HOH A 31 289 41 HOH HOH . I 5 HOH A 32 290 43 HOH HOH . I 5 HOH A 33 291 45 HOH HOH . I 5 HOH A 34 292 77 HOH HOH . I 5 HOH A 35 293 49 HOH HOH . I 5 HOH A 36 294 51 HOH HOH . I 5 HOH A 37 295 53 HOH HOH . I 5 HOH A 38 296 54 HOH HOH . I 5 HOH A 39 297 56 HOH HOH . I 5 HOH A 40 298 57 HOH HOH . I 5 HOH A 41 299 58 HOH HOH . I 5 HOH A 42 301 60 HOH HOH . I 5 HOH A 43 302 61 HOH HOH . I 5 HOH A 44 305 62 HOH HOH . I 5 HOH A 45 306 63 HOH HOH . I 5 HOH A 46 307 64 HOH HOH . I 5 HOH A 47 308 65 HOH HOH . I 5 HOH A 48 309 66 HOH HOH . I 5 HOH A 49 310 67 HOH HOH . I 5 HOH A 50 311 70 HOH HOH . I 5 HOH A 51 312 71 HOH HOH . I 5 HOH A 52 313 79 HOH HOH . I 5 HOH A 53 314 80 HOH HOH . I 5 HOH A 54 315 81 HOH HOH . I 5 HOH A 55 316 82 HOH HOH . J 5 HOH B 1 259 3 HOH HOH . J 5 HOH B 2 260 7 HOH HOH . J 5 HOH B 3 261 8 HOH HOH . J 5 HOH B 4 262 10 HOH HOH . J 5 HOH B 5 263 14 HOH HOH . J 5 HOH B 6 264 20 HOH HOH . J 5 HOH B 7 265 26 HOH HOH . J 5 HOH B 8 266 27 HOH HOH . J 5 HOH B 9 267 35 HOH HOH . J 5 HOH B 10 268 42 HOH HOH . J 5 HOH B 11 269 44 HOH HOH . J 5 HOH B 12 270 47 HOH HOH . J 5 HOH B 13 271 48 HOH HOH . J 5 HOH B 14 272 50 HOH HOH . J 5 HOH B 15 273 52 HOH HOH . J 5 HOH B 16 274 55 HOH HOH . J 5 HOH B 17 275 59 HOH HOH . J 5 HOH B 18 276 68 HOH HOH . J 5 HOH B 19 277 69 HOH HOH . J 5 HOH B 20 278 72 HOH HOH . J 5 HOH B 21 279 73 HOH HOH . J 5 HOH B 22 280 74 HOH HOH . J 5 HOH B 23 281 75 HOH HOH . J 5 HOH B 24 282 76 HOH HOH . J 5 HOH B 25 284 78 HOH HOH . J 5 HOH B 26 285 83 HOH HOH . J 5 HOH B 27 286 84 HOH HOH . J 5 HOH B 28 292 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PYG . . . H 4 36.296 51.457 262.808 1 79.55 ? C1 PYG 258 B 1 HETATM 2 C C2 PYG . . . H 4 36.157 50.583 261.611 1 80.29 ? C2 PYG 258 B 1 HETATM 3 C C3 PYG . . . H 4 34.82 50.306 261.113 1 80.99 ? C3 PYG 258 B 1 HETATM 4 C C4 PYG . . . H 4 33.725 50.871 261.774 1 81.74 ? C4 PYG 258 B 1 HETATM 5 C C5 PYG . . . H 4 33.893 51.691 262.9 1 79.79 ? C5 PYG 258 B 1 HETATM 6 C C6 PYG . . . H 4 35.153 51.979 263.407 1 79.21 ? C6 PYG 258 B 1 HETATM 7 O O2 PYG . . . H 4 37.185 50.012 260.926 1 78.76 ? O2 PYG 258 B 1 HETATM 8 O O3 PYG . . . H 4 34.746 49.502 260.011 1 83.12 ? O3 PYG 258 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #