data_3O6R # _model_server_result.job_id Jk_XbZRKFyC0RLMghsbgew _model_server_result.datetime_utc '2024-11-25 02:30:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":304}' # _entry.id 3O6R # _exptl.entry_id 3O6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 620.838 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O6R _cell.length_a 89.65 _cell.length_b 89.65 _cell.length_c 312.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 134 A TYR 134 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc2 A NE2 HIS 194 A HIS 194 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc4 F O2 PYG . A PYG 258 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc5 F O1 PYG . A PYG 258 1_555 C FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 B NE2 HIS 194 B HIS 194 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B NE2 HIS 196 B HIS 196 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 H O3 PYG . B PYG 258 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc9 H O2 PYG . B PYG 258 1_555 G FE FE . B FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C33 H65 O8 P' _chem_comp.formula_weight 620.838 _chem_comp.id MYY _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 C37 MYY sing 237 n n C38 H381 MYY sing 238 n n C38 H382 MYY sing 239 n n C38 H383 MYY sing 240 n n C37 C36 MYY sing 241 n n C37 H371 MYY sing 242 n n C37 H372 MYY sing 243 n n C36 C35 MYY sing 244 n n C36 H361 MYY sing 245 n n C36 H362 MYY sing 246 n n C35 C34 MYY sing 247 n n C35 H351 MYY sing 248 n n C35 H352 MYY sing 249 n n C34 C33 MYY sing 250 n n C34 H341 MYY sing 251 n n C34 H342 MYY sing 252 n n C33 C32 MYY sing 253 n n C33 H331 MYY sing 254 n n C33 H332 MYY sing 255 n n C32 C31 MYY sing 256 n n C32 H321 MYY sing 257 n n C32 H322 MYY sing 258 n n C31 C30 MYY sing 259 n n C31 H311 MYY sing 260 n n C31 H312 MYY sing 261 n n C30 C29 MYY sing 262 n n C30 H301 MYY sing 263 n n C30 H302 MYY sing 264 n n C29 C28 MYY sing 265 n n C29 H291 MYY sing 266 n n C29 H292 MYY sing 267 n n C28 C27 MYY sing 268 n n C28 H281 MYY sing 269 n n C28 H282 MYY sing 270 n n C27 C26 MYY sing 271 n n C27 H271 MYY sing 272 n n C27 H272 MYY sing 273 n n C26 C25 MYY sing 274 n n C26 H261 MYY sing 275 n n C26 H262 MYY sing 276 n n C25 C24 MYY sing 277 n n C25 H251 MYY sing 278 n n C25 H252 MYY sing 279 n n C24 C23 MYY sing 280 n n C24 H241 MYY sing 281 n n C24 H242 MYY sing 282 n n C23 O10 MYY doub 283 n n C23 O8 MYY sing 284 n n O8 C6 MYY sing 285 n n C6 C5 MYY sing 286 n n C6 H6C1 MYY sing 287 n n C6 H6C2 MYY sing 288 n n C5 C4 MYY sing 289 n n C5 O7 MYY sing 290 n n C5 H5 MYY sing 291 n n C4 O6 MYY sing 292 n n C4 H4C1 MYY sing 293 n n C4 H4C2 MYY sing 294 n n O6 P MYY sing 295 n n P O4 MYY sing 296 n n P O3 MYY sing 297 n n P O5 MYY doub 298 n n O4 H4 MYY sing 299 n n O3 H3 MYY sing 300 n n O7 C7 MYY sing 301 n n C7 O9 MYY doub 302 n n C7 C8 MYY sing 303 n n C8 C9 MYY sing 304 n n C8 H8C1 MYY sing 305 n n C8 H8C2 MYY sing 306 n n C9 C10 MYY sing 307 n n C9 H9C1 MYY sing 308 n n C9 H9C2 MYY sing 309 n n C10 C11 MYY sing 310 n n C10 H101 MYY sing 311 n n C10 H102 MYY sing 312 n n C11 C12 MYY sing 313 n n C11 H111 MYY sing 314 n n C11 H112 MYY sing 315 n n C12 C13 MYY sing 316 n n C12 H121 MYY sing 317 n n C12 H122 MYY sing 318 n n C13 C14 MYY sing 319 n n C13 H131 MYY sing 320 n n C13 H132 MYY sing 321 n n C14 C15 MYY sing 322 n n C14 H141 MYY sing 323 n n C14 H142 MYY sing 324 n n C15 C16 MYY sing 325 n n C15 H151 MYY sing 326 n n C15 H152 MYY sing 327 n n C16 C17 MYY sing 328 n n C16 H161 MYY sing 329 n n C16 H162 MYY sing 330 n n C17 C18 MYY sing 331 n n C17 H171 MYY sing 332 n n C17 H172 MYY sing 333 n n C18 C19 MYY sing 334 n n C18 H181 MYY sing 335 n n C18 H182 MYY sing 336 n n C19 C20 MYY sing 337 n n C19 H191 MYY sing 338 n n C19 H192 MYY sing 339 n n C20 H201 MYY sing 340 n n C20 H202 MYY sing 341 n n C20 H203 MYY sing 342 n n # _atom_sites.entry_id 3O6R _atom_sites.fract_transf_matrix[1][1] 0.011154 _atom_sites.fract_transf_matrix[1][2] 0.00644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 300 300 FE FE . D 3 MYY A 1 304 304 MYY MYY . E 3 MYY A 1 303 303 MYY MYY . F 4 PYG A 1 258 1 PYG PYG . G 2 FE B 1 301 301 FE FE . H 4 PYG B 1 258 1 PYG PYG . I 5 HOH A 1 259 1 HOH HOH . I 5 HOH A 2 260 2 HOH HOH . I 5 HOH A 3 261 4 HOH HOH . I 5 HOH A 4 262 5 HOH HOH . I 5 HOH A 5 263 6 HOH HOH . I 5 HOH A 6 264 9 HOH HOH . I 5 HOH A 7 265 11 HOH HOH . I 5 HOH A 8 266 13 HOH HOH . I 5 HOH A 9 267 15 HOH HOH . I 5 HOH A 10 268 16 HOH HOH . I 5 HOH A 11 269 17 HOH HOH . I 5 HOH A 12 270 18 HOH HOH . I 5 HOH A 13 271 19 HOH HOH . I 5 HOH A 14 272 21 HOH HOH . I 5 HOH A 15 273 22 HOH HOH . I 5 HOH A 16 274 23 HOH HOH . I 5 HOH A 17 275 24 HOH HOH . I 5 HOH A 18 276 25 HOH HOH . I 5 HOH A 19 277 28 HOH HOH . I 5 HOH A 20 278 29 HOH HOH . I 5 HOH A 21 279 30 HOH HOH . I 5 HOH A 22 280 31 HOH HOH . I 5 HOH A 23 281 32 HOH HOH . I 5 HOH A 24 282 33 HOH HOH . I 5 HOH A 25 283 34 HOH HOH . I 5 HOH A 26 284 36 HOH HOH . I 5 HOH A 27 285 37 HOH HOH . I 5 HOH A 28 286 38 HOH HOH . I 5 HOH A 29 287 39 HOH HOH . I 5 HOH A 30 288 40 HOH HOH . I 5 HOH A 31 289 41 HOH HOH . I 5 HOH A 32 290 43 HOH HOH . I 5 HOH A 33 291 45 HOH HOH . I 5 HOH A 34 292 77 HOH HOH . I 5 HOH A 35 293 49 HOH HOH . I 5 HOH A 36 294 51 HOH HOH . I 5 HOH A 37 295 53 HOH HOH . I 5 HOH A 38 296 54 HOH HOH . I 5 HOH A 39 297 56 HOH HOH . I 5 HOH A 40 298 57 HOH HOH . I 5 HOH A 41 299 58 HOH HOH . I 5 HOH A 42 301 60 HOH HOH . I 5 HOH A 43 302 61 HOH HOH . I 5 HOH A 44 305 62 HOH HOH . I 5 HOH A 45 306 63 HOH HOH . I 5 HOH A 46 307 64 HOH HOH . I 5 HOH A 47 308 65 HOH HOH . I 5 HOH A 48 309 66 HOH HOH . I 5 HOH A 49 310 67 HOH HOH . I 5 HOH A 50 311 70 HOH HOH . I 5 HOH A 51 312 71 HOH HOH . I 5 HOH A 52 313 79 HOH HOH . I 5 HOH A 53 314 80 HOH HOH . I 5 HOH A 54 315 81 HOH HOH . I 5 HOH A 55 316 82 HOH HOH . J 5 HOH B 1 259 3 HOH HOH . J 5 HOH B 2 260 7 HOH HOH . J 5 HOH B 3 261 8 HOH HOH . J 5 HOH B 4 262 10 HOH HOH . J 5 HOH B 5 263 14 HOH HOH . J 5 HOH B 6 264 20 HOH HOH . J 5 HOH B 7 265 26 HOH HOH . J 5 HOH B 8 266 27 HOH HOH . J 5 HOH B 9 267 35 HOH HOH . J 5 HOH B 10 268 42 HOH HOH . J 5 HOH B 11 269 44 HOH HOH . J 5 HOH B 12 270 47 HOH HOH . J 5 HOH B 13 271 48 HOH HOH . J 5 HOH B 14 272 50 HOH HOH . J 5 HOH B 15 273 52 HOH HOH . J 5 HOH B 16 274 55 HOH HOH . J 5 HOH B 17 275 59 HOH HOH . J 5 HOH B 18 276 68 HOH HOH . J 5 HOH B 19 277 69 HOH HOH . J 5 HOH B 20 278 72 HOH HOH . J 5 HOH B 21 279 73 HOH HOH . J 5 HOH B 22 280 74 HOH HOH . J 5 HOH B 23 281 75 HOH HOH . J 5 HOH B 24 282 76 HOH HOH . J 5 HOH B 25 284 78 HOH HOH . J 5 HOH B 26 285 83 HOH HOH . J 5 HOH B 27 286 84 HOH HOH . J 5 HOH B 28 292 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C38 MYY . . . D 3 36.046 59.615 278.219 1 53.65 ? C38 MYY 304 A 1 HETATM 2 C C37 MYY . . . D 3 35.343 59.896 276.893 1 49.06 ? C37 MYY 304 A 1 HETATM 3 C C36 MYY . . . D 3 34.045 60.623 277.137 1 49.23 ? C36 MYY 304 A 1 HETATM 4 C C35 MYY . . . D 3 32.843 59.677 277.238 1 45.89 ? C35 MYY 304 A 1 HETATM 5 C C34 MYY . . . D 3 31.607 60.457 277.676 1 46.64 ? C34 MYY 304 A 1 HETATM 6 C C33 MYY . . . D 3 30.517 60.313 276.632 1 47.19 ? C33 MYY 304 A 1 HETATM 7 C C32 MYY . . . D 3 29.359 61.259 276.858 1 46.6 ? C32 MYY 304 A 1 HETATM 8 C C31 MYY . . . D 3 28.662 61.528 275.531 1 47.01 ? C31 MYY 304 A 1 HETATM 9 C C30 MYY . . . D 3 27.201 61.806 275.761 1 47.66 ? C30 MYY 304 A 1 HETATM 10 C C29 MYY . . . D 3 26.614 62.466 274.528 1 51.88 ? C29 MYY 304 A 1 HETATM 11 C C28 MYY . . . D 3 25.129 62.624 274.76 1 55.83 ? C28 MYY 304 A 1 HETATM 12 C C27 MYY . . . D 3 24.332 62.553 273.48 1 59.12 ? C27 MYY 304 A 1 HETATM 13 C C26 MYY . . . D 3 22.895 62.25 273.854 1 61.63 ? C26 MYY 304 A 1 HETATM 14 C C25 MYY . . . D 3 21.92 62.938 272.938 1 65.81 ? C25 MYY 304 A 1 HETATM 15 C C24 MYY . . . D 3 20.965 63.768 273.769 1 72.26 ? C24 MYY 304 A 1 HETATM 16 C C23 MYY . . . D 3 19.568 63.184 273.696 1 75.63 ? C23 MYY 304 A 1 HETATM 17 O O10 MYY . . . D 3 19.369 62.013 274.035 1 76.35 ? O10 MYY 304 A 1 HETATM 18 O O8 MYY . . . D 3 18.445 64.031 273.235 1 77.53 ? O8 MYY 304 A 1 HETATM 19 C C6 MYY . . . D 3 17.408 64.107 274.241 1 79.09 ? C6 MYY 304 A 1 HETATM 20 C C5 MYY . . . D 3 16.933 65.535 274.56 1 78.4 ? C5 MYY 304 A 1 HETATM 21 C C4 MYY . . . D 3 15.51 65.725 274.037 1 80.43 ? C4 MYY 304 A 1 HETATM 22 O O7 MYY . . . D 3 17.802 66.501 273.962 1 77.11 ? O7 MYY 304 A 1 HETATM 23 C C7 MYY . . . D 3 18.472 67.361 274.947 1 73.76 ? C7 MYY 304 A 1 HETATM 24 O O9 MYY . . . D 3 18.056 68.48 275.142 1 72.24 ? O9 MYY 304 A 1 HETATM 25 C C8 MYY . . . D 3 19.679 66.887 275.691 1 70.75 ? C8 MYY 304 A 1 HETATM 26 C C9 MYY . . . D 3 20.85 67.796 275.349 1 68.63 ? C9 MYY 304 A 1 HETATM 27 C C10 MYY . . . D 3 22.136 66.976 275.398 1 64.74 ? C10 MYY 304 A 1 HETATM 28 C C11 MYY . . . D 3 23.359 67.861 275.511 1 61.47 ? C11 MYY 304 A 1 HETATM 29 C C12 MYY . . . D 3 24.566 67.039 275.936 1 59.86 ? C12 MYY 304 A 1 HETATM 30 C C13 MYY . . . D 3 25.488 66.753 274.754 1 55.68 ? C13 MYY 304 A 1 HETATM 31 C C14 MYY . . . D 3 26.698 65.948 275.211 1 54.73 ? C14 MYY 304 A 1 HETATM 32 C C15 MYY . . . D 3 27.907 66.835 275.39 1 52.32 ? C15 MYY 304 A 1 HETATM 33 C C16 MYY . . . D 3 28.877 66.205 276.373 1 52.06 ? C16 MYY 304 A 1 HETATM 34 C C17 MYY . . . D 3 28.489 66.578 277.792 1 50.17 ? C17 MYY 304 A 1 HETATM 35 C C18 MYY . . . D 3 29.12 65.607 278.774 1 51.52 ? C18 MYY 304 A 1 HETATM 36 C C19 MYY . . . D 3 29.88 66.338 279.862 1 48.45 ? C19 MYY 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #