data_3O73 # _model_server_result.job_id Bvc2HLcrtNI9cQH7WoWiNw _model_server_result.datetime_utc '2024-10-14 08:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":240}' # _entry.id 3O73 # _exptl.entry_id 3O73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4-aminobutyl)amino]-1,2-dimethyl-3-[(4-nitrophenoxy)methyl]-1H-indole-4,7-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O73 _cell.length_a 57.08 _cell.length_b 82.05 _cell.length_c 106.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 174 A HIS 173 1_555 C ZN ZN . A ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 A ND1 HIS 178 A HIS 177 1_555 C ZN ZN . A ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A O CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 A SG CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 B ND1 HIS 174 B HIS 173 1_555 G ZN ZN . B ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 B ND1 HIS 178 B HIS 177 1_555 G ZN ZN . B ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc7 B SG CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 B O CYS 223 B CYS 222 1_555 G ZN ZN . B ZN 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'C21 H24 N4 O5' _chem_comp.formula_weight 412.439 _chem_comp.id O73 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4-aminobutyl)amino]-1,2-dimethyl-3-[(4-nitrophenoxy)methyl]-1H-indole-4,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 O73 doub 328 n y C1 C6 O73 sing 329 n y C1 H1 O73 sing 330 n n C2 C3 O73 sing 331 n y C2 H2 O73 sing 332 n n C3 C4 O73 doub 333 n y C3 O10 O73 sing 334 n n C4 C5 O73 sing 335 n y C4 H4 O73 sing 336 n n C5 C6 O73 doub 337 n y C5 H5 O73 sing 338 n n C6 N7 O73 sing 339 n n N7 O8 O73 doub 340 n n N7 O9 O73 sing 341 n n O10 C11 O73 sing 342 n n C11 C12 O73 sing 343 n n C11 H11 O73 sing 344 n n C11 H11A O73 sing 345 n n C12 C13 O73 doub 346 n y C12 C16 O73 sing 347 n y C13 N14 O73 sing 348 n y C13 C21 O73 sing 349 n n N14 C15 O73 sing 350 n y N14 C22 O73 sing 351 n n C15 C16 O73 doub 352 n y C15 C17 O73 sing 353 n n C16 C20 O73 sing 354 n n C17 C18 O73 sing 355 n n C17 O23 O73 doub 356 n n C18 C19 O73 doub 357 n n C18 H18 O73 sing 358 n n C19 C20 O73 sing 359 n n C19 N25 O73 sing 360 n n C20 O24 O73 doub 361 n n C21 H21 O73 sing 362 n n C21 H21A O73 sing 363 n n C21 H21B O73 sing 364 n n C22 H22 O73 sing 365 n n C22 H22A O73 sing 366 n n C22 H22B O73 sing 367 n n N25 C26 O73 sing 368 n n N25 HN25 O73 sing 369 n n C26 C27 O73 sing 370 n n C26 H26 O73 sing 371 n n C26 H26A O73 sing 372 n n C27 C28 O73 sing 373 n n C27 H27 O73 sing 374 n n C27 H27A O73 sing 375 n n C28 C29 O73 sing 376 n n C28 H28 O73 sing 377 n n C28 H28A O73 sing 378 n n C29 N30 O73 sing 379 n n C29 H29 O73 sing 380 n n C29 H29A O73 sing 381 n n N30 HN30 O73 sing 382 n n N30 HN3A O73 sing 383 n n # _atom_sites.entry_id 3O73 _atom_sites.fract_transf_matrix[1][1] 0.017519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 237 231 ZN ZN . D 3 FAD A 1 238 234 FAD FAD . E 4 O73 A 1 239 1 O73 O73 . F 4 O73 A 1 240 1 O73 O73 . G 2 ZN B 1 237 232 ZN ZN . H 3 FAD B 1 238 233 FAD FAD . I 5 HOH A 1 241 1 HOH HOH . I 5 HOH A 2 242 7 HOH HOH . I 5 HOH A 3 243 8 HOH HOH . I 5 HOH A 4 244 11 HOH HOH . I 5 HOH A 5 245 12 HOH HOH . I 5 HOH A 6 246 13 HOH HOH . I 5 HOH A 7 247 14 HOH HOH . I 5 HOH A 8 248 15 HOH HOH . I 5 HOH A 9 249 22 HOH HOH . I 5 HOH A 10 250 23 HOH HOH . I 5 HOH A 11 251 24 HOH HOH . I 5 HOH A 12 252 26 HOH HOH . I 5 HOH A 13 254 29 HOH HOH . I 5 HOH A 14 255 33 HOH HOH . I 5 HOH A 15 256 34 HOH HOH . I 5 HOH A 16 257 35 HOH HOH . I 5 HOH A 17 258 38 HOH HOH . I 5 HOH A 18 259 40 HOH HOH . I 5 HOH A 19 260 41 HOH HOH . I 5 HOH A 20 261 42 HOH HOH . I 5 HOH A 21 262 43 HOH HOH . I 5 HOH A 22 263 44 HOH HOH . I 5 HOH A 23 264 47 HOH HOH . I 5 HOH A 24 265 48 HOH HOH . I 5 HOH A 25 266 52 HOH HOH . I 5 HOH A 26 267 53 HOH HOH . I 5 HOH A 27 268 54 HOH HOH . I 5 HOH A 28 269 57 HOH HOH . I 5 HOH A 29 270 58 HOH HOH . I 5 HOH A 30 271 60 HOH HOH . I 5 HOH A 31 272 62 HOH HOH . J 5 HOH B 1 239 2 HOH HOH . J 5 HOH B 2 240 3 HOH HOH . J 5 HOH B 3 241 4 HOH HOH . J 5 HOH B 4 242 5 HOH HOH . J 5 HOH B 5 243 6 HOH HOH . J 5 HOH B 6 244 9 HOH HOH . J 5 HOH B 7 245 10 HOH HOH . J 5 HOH B 8 246 16 HOH HOH . J 5 HOH B 9 247 17 HOH HOH . J 5 HOH B 10 248 18 HOH HOH . J 5 HOH B 11 249 19 HOH HOH . J 5 HOH B 12 250 20 HOH HOH . J 5 HOH B 13 251 21 HOH HOH . J 5 HOH B 14 252 25 HOH HOH . J 5 HOH B 15 253 27 HOH HOH . J 5 HOH B 16 254 30 HOH HOH . J 5 HOH B 17 255 31 HOH HOH . J 5 HOH B 18 256 32 HOH HOH . J 5 HOH B 19 257 36 HOH HOH . J 5 HOH B 20 258 37 HOH HOH . J 5 HOH B 21 259 39 HOH HOH . J 5 HOH B 22 260 45 HOH HOH . J 5 HOH B 23 261 46 HOH HOH . J 5 HOH B 24 262 49 HOH HOH . J 5 HOH B 25 263 50 HOH HOH . J 5 HOH B 26 264 51 HOH HOH . J 5 HOH B 27 265 55 HOH HOH . J 5 HOH B 28 266 56 HOH HOH . J 5 HOH B 29 267 59 HOH HOH . J 5 HOH B 30 268 61 HOH HOH . J 5 HOH B 31 269 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 O73 . . . F 4 31.46 13.521 17.366 1 82.91 ? C1 O73 240 A 1 HETATM 2 C C2 O73 . . . F 4 30.268 13.965 16.788 1 80.97 ? C2 O73 240 A 1 HETATM 3 C C3 O73 . . . F 4 29.447 14.878 17.468 1 78.65 ? C3 O73 240 A 1 HETATM 4 C C4 O73 . . . F 4 29.818 15.335 18.742 1 80.07 ? C4 O73 240 A 1 HETATM 5 C C5 O73 . . . F 4 31.012 14.893 19.313 1 81.84 ? C5 O73 240 A 1 HETATM 6 C C6 O73 . . . F 4 31.84 13.985 18.632 1 83.65 ? C6 O73 240 A 1 HETATM 7 N N7 O73 . . . F 4 33.044 13.52 19.208 1 85.46 ? N7 O73 240 A 1 HETATM 8 O O8 O73 . . . F 4 33.603 14.121 20.128 1 87.17 ? O8 O73 240 A 1 HETATM 9 O O9 O73 . . . F 4 33.543 12.48 18.793 1 86.08 ? O9 O73 240 A 1 HETATM 10 O O10 O73 . . . F 4 28.27 15.286 16.868 1 73.18 ? O10 O73 240 A 1 HETATM 11 C C11 O73 . . . F 4 27.801 16.643 16.768 1 66.73 ? C11 O73 240 A 1 HETATM 12 C C12 O73 . . . F 4 26.551 16.646 15.914 1 59.72 ? C12 O73 240 A 1 HETATM 13 C C13 O73 . . . F 4 25.549 17.719 15.578 1 59.85 ? C13 O73 240 A 1 HETATM 14 N N14 O73 . . . F 4 24.594 17.235 14.745 1 57 ? N14 O73 240 A 1 HETATM 15 C C15 O73 . . . F 4 24.874 15.941 14.502 1 54.53 ? C15 O73 240 A 1 HETATM 16 C C16 O73 . . . F 4 26.08 15.475 15.186 1 55.65 ? C16 O73 240 A 1 HETATM 17 C C17 O73 . . . F 4 24.142 15.005 13.645 1 52.49 ? C17 O73 240 A 1 HETATM 18 C C18 O73 . . . F 4 24.579 13.686 13.513 1 52.45 ? C18 O73 240 A 1 HETATM 19 C C19 O73 . . . F 4 25.729 13.193 14.159 1 53.4 ? C19 O73 240 A 1 HETATM 20 C C20 O73 . . . F 4 26.53 14.075 15.015 1 55.4 ? C20 O73 240 A 1 HETATM 21 C C21 O73 . . . F 4 25.573 19.152 16.04 1 60.91 ? C21 O73 240 A 1 HETATM 22 C C22 O73 . . . F 4 23.433 18.031 14.22 1 55.09 ? C22 O73 240 A 1 HETATM 23 O O23 O73 . . . F 4 23.117 15.407 13.068 1 55.42 ? O23 O73 240 A 1 HETATM 24 O O24 O73 . . . F 4 27.555 13.623 15.585 1 57.52 ? O24 O73 240 A 1 HETATM 25 N N25 O73 . . . F 4 26.122 11.896 13.99 1 54.6 ? N25 O73 240 A 1 HETATM 26 C C26 O73 . . . F 4 25.297 11.134 13.034 1 57.39 ? C26 O73 240 A 1 HETATM 27 C C27 O73 . . . F 4 25.681 9.723 12.532 1 57.89 ? C27 O73 240 A 1 HETATM 28 C C28 O73 . . . F 4 24.404 9.155 11.858 1 57.2 ? C28 O73 240 A 1 HETATM 29 C C29 O73 . . . F 4 24.415 7.832 11.06 1 57.62 ? C29 O73 240 A 1 HETATM 30 N N30 O73 . . . F 4 25.108 6.644 11.605 1 53.37 ? N30 O73 240 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #