data_3O74 # _model_server_result.job_id ANKYJobCY_pR0a73uR1Ubw _model_server_result.datetime_utc '2024-12-26 23:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":332}' # _entry.id 3O74 # _exptl.entry_id 3O74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.13 _cell.angle_gamma 90 _cell.entry_id 3O74 _cell.length_a 37.309 _cell.length_b 118.506 _cell.length_c 61.834 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 169 A LEU 228 1_555 A N MSE 170 A MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 170 A MSE 229 1_555 A N GLN 171 A GLN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 229 A ALA 288 1_555 A N MSE 230 A MSE 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 230 A MSE 289 1_555 A N ALA 231 A ALA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LEU 169 B LEU 228 1_555 B N MSE 170 B MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C MSE 170 B MSE 229 1_555 B N GLN 171 B GLN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C ALA 229 B ALA 288 1_555 B N MSE 230 B MSE 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 230 B MSE 289 1_555 B N ALA 231 B ALA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3O74 _atom_sites.fract_transf_matrix[1][1] 0.026803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 332 301 GOL GOL . D 2 GOL B 1 332 301 GOL GOL . E 3 HOH A 1 5 5 HOH HOH . E 3 HOH A 2 9 9 HOH HOH . E 3 HOH A 3 10 10 HOH HOH . E 3 HOH A 4 11 11 HOH HOH . E 3 HOH A 5 17 17 HOH HOH . E 3 HOH A 6 18 18 HOH HOH . E 3 HOH A 7 20 20 HOH HOH . E 3 HOH A 8 21 21 HOH HOH . E 3 HOH A 9 24 24 HOH HOH . E 3 HOH A 10 28 28 HOH HOH . E 3 HOH A 11 29 29 HOH HOH . E 3 HOH A 12 30 30 HOH HOH . E 3 HOH A 13 32 32 HOH HOH . E 3 HOH A 14 33 33 HOH HOH . E 3 HOH A 15 34 34 HOH HOH . E 3 HOH A 16 37 37 HOH HOH . E 3 HOH A 17 42 42 HOH HOH . E 3 HOH A 18 44 44 HOH HOH . E 3 HOH A 19 45 45 HOH HOH . E 3 HOH A 20 48 48 HOH HOH . E 3 HOH A 21 49 49 HOH HOH . E 3 HOH A 22 53 53 HOH HOH . E 3 HOH A 23 54 54 HOH HOH . E 3 HOH A 24 333 60 HOH HOH . E 3 HOH A 25 334 61 HOH HOH . E 3 HOH A 26 335 62 HOH HOH . E 3 HOH A 27 336 67 HOH HOH . E 3 HOH A 28 337 71 HOH HOH . E 3 HOH A 29 338 72 HOH HOH . E 3 HOH A 30 339 73 HOH HOH . E 3 HOH A 31 340 74 HOH HOH . E 3 HOH A 32 341 75 HOH HOH . E 3 HOH A 33 342 76 HOH HOH . E 3 HOH A 34 343 78 HOH HOH . E 3 HOH A 35 344 80 HOH HOH . E 3 HOH A 36 345 82 HOH HOH . E 3 HOH A 37 346 83 HOH HOH . E 3 HOH A 38 347 85 HOH HOH . E 3 HOH A 39 348 87 HOH HOH . E 3 HOH A 40 349 88 HOH HOH . E 3 HOH A 41 350 95 HOH HOH . E 3 HOH A 42 351 97 HOH HOH . E 3 HOH A 43 352 98 HOH HOH . E 3 HOH A 44 353 100 HOH HOH . E 3 HOH A 45 354 101 HOH HOH . E 3 HOH A 46 355 103 HOH HOH . E 3 HOH A 47 356 104 HOH HOH . E 3 HOH A 48 357 106 HOH HOH . E 3 HOH A 49 358 109 HOH HOH . E 3 HOH A 50 359 114 HOH HOH . E 3 HOH A 51 360 117 HOH HOH . E 3 HOH A 52 361 120 HOH HOH . E 3 HOH A 53 362 125 HOH HOH . E 3 HOH A 54 363 126 HOH HOH . E 3 HOH A 55 364 131 HOH HOH . E 3 HOH A 56 365 132 HOH HOH . E 3 HOH A 57 366 133 HOH HOH . E 3 HOH A 58 367 134 HOH HOH . E 3 HOH A 59 368 136 HOH HOH . E 3 HOH A 60 369 137 HOH HOH . E 3 HOH A 61 370 138 HOH HOH . E 3 HOH A 62 371 142 HOH HOH . E 3 HOH A 63 372 145 HOH HOH . E 3 HOH A 64 373 150 HOH HOH . E 3 HOH A 65 374 152 HOH HOH . E 3 HOH A 66 375 153 HOH HOH . E 3 HOH A 67 376 154 HOH HOH . E 3 HOH A 68 377 155 HOH HOH . E 3 HOH A 69 378 157 HOH HOH . E 3 HOH A 70 379 159 HOH HOH . E 3 HOH A 71 380 162 HOH HOH . E 3 HOH A 72 381 163 HOH HOH . E 3 HOH A 73 382 165 HOH HOH . E 3 HOH A 74 383 166 HOH HOH . E 3 HOH A 75 384 167 HOH HOH . E 3 HOH A 76 385 168 HOH HOH . E 3 HOH A 77 386 169 HOH HOH . E 3 HOH A 78 387 173 HOH HOH . E 3 HOH A 79 388 175 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 3 3 HOH HOH . F 3 HOH B 4 4 4 HOH HOH . F 3 HOH B 5 6 6 HOH HOH . F 3 HOH B 6 7 7 HOH HOH . F 3 HOH B 7 8 8 HOH HOH . F 3 HOH B 8 12 12 HOH HOH . F 3 HOH B 9 13 13 HOH HOH . F 3 HOH B 10 14 14 HOH HOH . F 3 HOH B 11 15 15 HOH HOH . F 3 HOH B 12 16 16 HOH HOH . F 3 HOH B 13 19 19 HOH HOH . F 3 HOH B 14 22 22 HOH HOH . F 3 HOH B 15 23 23 HOH HOH . F 3 HOH B 16 25 25 HOH HOH . F 3 HOH B 17 26 26 HOH HOH . F 3 HOH B 18 27 27 HOH HOH . F 3 HOH B 19 31 31 HOH HOH . F 3 HOH B 20 35 35 HOH HOH . F 3 HOH B 21 36 36 HOH HOH . F 3 HOH B 22 38 38 HOH HOH . F 3 HOH B 23 39 39 HOH HOH . F 3 HOH B 24 40 40 HOH HOH . F 3 HOH B 25 41 41 HOH HOH . F 3 HOH B 26 43 43 HOH HOH . F 3 HOH B 27 46 46 HOH HOH . F 3 HOH B 28 47 47 HOH HOH . F 3 HOH B 29 50 50 HOH HOH . F 3 HOH B 30 51 51 HOH HOH . F 3 HOH B 31 52 52 HOH HOH . F 3 HOH B 32 55 55 HOH HOH . F 3 HOH B 33 56 56 HOH HOH . F 3 HOH B 34 57 57 HOH HOH . F 3 HOH B 35 58 58 HOH HOH . F 3 HOH B 36 59 59 HOH HOH . F 3 HOH B 37 333 63 HOH HOH . F 3 HOH B 38 334 64 HOH HOH . F 3 HOH B 39 335 65 HOH HOH . F 3 HOH B 40 336 66 HOH HOH . F 3 HOH B 41 337 68 HOH HOH . F 3 HOH B 42 338 69 HOH HOH . F 3 HOH B 43 339 70 HOH HOH . F 3 HOH B 44 340 77 HOH HOH . F 3 HOH B 45 341 79 HOH HOH . F 3 HOH B 46 342 81 HOH HOH . F 3 HOH B 47 343 84 HOH HOH . F 3 HOH B 48 344 86 HOH HOH . F 3 HOH B 49 345 89 HOH HOH . F 3 HOH B 50 346 90 HOH HOH . F 3 HOH B 51 347 91 HOH HOH . F 3 HOH B 52 348 92 HOH HOH . F 3 HOH B 53 349 93 HOH HOH . F 3 HOH B 54 350 94 HOH HOH . F 3 HOH B 55 351 96 HOH HOH . F 3 HOH B 56 352 99 HOH HOH . F 3 HOH B 57 353 102 HOH HOH . F 3 HOH B 58 354 105 HOH HOH . F 3 HOH B 59 355 107 HOH HOH . F 3 HOH B 60 356 108 HOH HOH . F 3 HOH B 61 357 110 HOH HOH . F 3 HOH B 62 358 111 HOH HOH . F 3 HOH B 63 359 112 HOH HOH . F 3 HOH B 64 360 113 HOH HOH . F 3 HOH B 65 361 115 HOH HOH . F 3 HOH B 66 362 116 HOH HOH . F 3 HOH B 67 363 118 HOH HOH . F 3 HOH B 68 364 119 HOH HOH . F 3 HOH B 69 365 121 HOH HOH . F 3 HOH B 70 366 122 HOH HOH . F 3 HOH B 71 367 123 HOH HOH . F 3 HOH B 72 368 124 HOH HOH . F 3 HOH B 73 369 127 HOH HOH . F 3 HOH B 74 370 128 HOH HOH . F 3 HOH B 75 371 129 HOH HOH . F 3 HOH B 76 372 130 HOH HOH . F 3 HOH B 77 373 135 HOH HOH . F 3 HOH B 78 374 139 HOH HOH . F 3 HOH B 79 375 140 HOH HOH . F 3 HOH B 80 376 141 HOH HOH . F 3 HOH B 81 377 143 HOH HOH . F 3 HOH B 82 378 144 HOH HOH . F 3 HOH B 83 379 146 HOH HOH . F 3 HOH B 84 380 147 HOH HOH . F 3 HOH B 85 381 148 HOH HOH . F 3 HOH B 86 382 149 HOH HOH . F 3 HOH B 87 383 151 HOH HOH . F 3 HOH B 88 384 156 HOH HOH . F 3 HOH B 89 385 158 HOH HOH . F 3 HOH B 90 386 160 HOH HOH . F 3 HOH B 91 387 161 HOH HOH . F 3 HOH B 92 388 164 HOH HOH . F 3 HOH B 93 389 170 HOH HOH . F 3 HOH B 94 390 171 HOH HOH . F 3 HOH B 95 391 172 HOH HOH . F 3 HOH B 96 392 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 5.494 8.162 37.896 1 56.91 ? C1 GOL 332 A 1 HETATM 2 O O1 GOL . . . C 2 6.102 8.293 39.145 1 53.41 ? O1 GOL 332 A 1 HETATM 3 C C2 GOL . . . C 2 5.745 6.764 37.404 1 60.89 ? C2 GOL 332 A 1 HETATM 4 O O2 GOL . . . C 2 5.201 5.916 38.379 1 58.77 ? O2 GOL 332 A 1 HETATM 5 C C3 GOL . . . C 2 5.136 6.575 36.021 1 60.27 ? C3 GOL 332 A 1 HETATM 6 O O3 GOL . . . C 2 6.032 6.081 35.063 1 57.36 ? O3 GOL 332 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #