data_3O75 # _model_server_result.job_id L86-TFP0Q4tr76C2eejtVg _model_server_result.datetime_utc '2024-12-26 20:46:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3O75 # _exptl.entry_id 3O75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.41 _cell.angle_gamma 90 _cell.entry_id 3O75 _cell.length_a 37.711 _cell.length_b 120.22 _cell.length_c 61.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F1X _chem_comp.mon_nstd_flag n _chem_comp.name 1-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta D-Fructose 1-phosphate;1-O-phosphono-beta-D-fructose;1-O-phosphono-D-fructose;1-O-phosphono-fructose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F1X sing 83 n n C1 C2 F1X sing 84 n n C1 H11 F1X sing 85 n n C1 H12 F1X sing 86 n n P1 O1 F1X sing 87 n n O3P P1 F1X doub 88 n n P1 O2P F1X sing 89 n n P1 O1P F1X sing 90 n n O2 C2 F1X sing 91 n n C2 O5 F1X sing 92 n n C2 C3 F1X sing 93 n n O2 HO2 F1X sing 94 n n O3 C3 F1X sing 95 n n C3 C4 F1X sing 96 n n C3 H3 F1X sing 97 n n O3 HO3 F1X sing 98 n n C5 C4 F1X sing 99 n n C4 O4 F1X sing 100 n n C4 H4 F1X sing 101 n n O4 HO4 F1X sing 102 n n O5 C5 F1X sing 103 n n C5 C6 F1X sing 104 n n C5 H5 F1X sing 105 n n C6 O6 F1X sing 106 n n C6 H61 F1X sing 107 n n C6 H62 F1X sing 108 n n O6 HO6 F1X sing 109 n n O1P HO1P F1X sing 110 n n O2P HO2P F1X sing 111 n n # _atom_sites.entry_id 3O75 _atom_sites.fract_transf_matrix[1][1] 0.026517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F1X A 1 1 1 F1X F1X . D 2 F1X B 1 1 1 F1X F1X . E 3 HOH A 1 3 3 HOH HOH . E 3 HOH A 2 4 4 HOH HOH . E 3 HOH A 3 7 7 HOH HOH . E 3 HOH A 4 8 8 HOH HOH . E 3 HOH A 5 11 11 HOH HOH . E 3 HOH A 6 12 12 HOH HOH . E 3 HOH A 7 13 13 HOH HOH . E 3 HOH A 8 14 14 HOH HOH . E 3 HOH A 9 15 15 HOH HOH . E 3 HOH A 10 17 17 HOH HOH . E 3 HOH A 11 18 18 HOH HOH . E 3 HOH A 12 20 20 HOH HOH . E 3 HOH A 13 22 22 HOH HOH . E 3 HOH A 14 24 24 HOH HOH . E 3 HOH A 15 25 25 HOH HOH . E 3 HOH A 16 26 26 HOH HOH . E 3 HOH A 17 27 27 HOH HOH . E 3 HOH A 18 30 30 HOH HOH . E 3 HOH A 19 34 34 HOH HOH . E 3 HOH A 20 35 35 HOH HOH . E 3 HOH A 21 38 38 HOH HOH . E 3 HOH A 22 40 40 HOH HOH . E 3 HOH A 23 41 41 HOH HOH . E 3 HOH A 24 48 48 HOH HOH . E 3 HOH A 25 51 51 HOH HOH . E 3 HOH A 26 52 52 HOH HOH . E 3 HOH A 27 53 53 HOH HOH . E 3 HOH A 28 54 54 HOH HOH . E 3 HOH A 29 55 55 HOH HOH . E 3 HOH A 30 56 56 HOH HOH . E 3 HOH A 31 57 57 HOH HOH . E 3 HOH A 32 58 58 HOH HOH . E 3 HOH A 33 332 61 HOH HOH . E 3 HOH A 34 333 63 HOH HOH . E 3 HOH A 35 334 64 HOH HOH . E 3 HOH A 36 335 65 HOH HOH . E 3 HOH A 37 336 68 HOH HOH . E 3 HOH A 38 337 70 HOH HOH . E 3 HOH A 39 338 73 HOH HOH . E 3 HOH A 40 339 76 HOH HOH . E 3 HOH A 41 340 77 HOH HOH . E 3 HOH A 42 341 81 HOH HOH . E 3 HOH A 43 342 83 HOH HOH . E 3 HOH A 44 343 85 HOH HOH . E 3 HOH A 45 344 87 HOH HOH . E 3 HOH A 46 345 88 HOH HOH . E 3 HOH A 47 346 89 HOH HOH . E 3 HOH A 48 347 95 HOH HOH . E 3 HOH A 49 348 96 HOH HOH . E 3 HOH A 50 349 97 HOH HOH . E 3 HOH A 51 350 98 HOH HOH . E 3 HOH A 52 351 102 HOH HOH . E 3 HOH A 53 352 103 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 5 5 HOH HOH . F 3 HOH B 3 6 6 HOH HOH . F 3 HOH B 4 9 9 HOH HOH . F 3 HOH B 5 10 10 HOH HOH . F 3 HOH B 6 16 16 HOH HOH . F 3 HOH B 7 19 19 HOH HOH . F 3 HOH B 8 21 21 HOH HOH . F 3 HOH B 9 23 23 HOH HOH . F 3 HOH B 10 28 28 HOH HOH . F 3 HOH B 11 29 29 HOH HOH . F 3 HOH B 12 31 31 HOH HOH . F 3 HOH B 13 32 32 HOH HOH . F 3 HOH B 14 33 33 HOH HOH . F 3 HOH B 15 36 36 HOH HOH . F 3 HOH B 16 37 37 HOH HOH . F 3 HOH B 17 39 39 HOH HOH . F 3 HOH B 18 42 42 HOH HOH . F 3 HOH B 19 43 43 HOH HOH . F 3 HOH B 20 44 44 HOH HOH . F 3 HOH B 21 45 45 HOH HOH . F 3 HOH B 22 46 46 HOH HOH . F 3 HOH B 23 47 47 HOH HOH . F 3 HOH B 24 49 49 HOH HOH . F 3 HOH B 25 50 50 HOH HOH . F 3 HOH B 26 59 59 HOH HOH . F 3 HOH B 27 332 1 HOH HOH . F 3 HOH B 28 333 60 HOH HOH . F 3 HOH B 29 334 62 HOH HOH . F 3 HOH B 30 335 66 HOH HOH . F 3 HOH B 31 336 67 HOH HOH . F 3 HOH B 32 337 69 HOH HOH . F 3 HOH B 33 338 71 HOH HOH . F 3 HOH B 34 339 72 HOH HOH . F 3 HOH B 35 340 74 HOH HOH . F 3 HOH B 36 341 75 HOH HOH . F 3 HOH B 37 342 78 HOH HOH . F 3 HOH B 38 343 79 HOH HOH . F 3 HOH B 39 344 80 HOH HOH . F 3 HOH B 40 345 82 HOH HOH . F 3 HOH B 41 346 84 HOH HOH . F 3 HOH B 42 347 86 HOH HOH . F 3 HOH B 43 348 90 HOH HOH . F 3 HOH B 44 349 91 HOH HOH . F 3 HOH B 45 350 92 HOH HOH . F 3 HOH B 46 351 93 HOH HOH . F 3 HOH B 47 352 94 HOH HOH . F 3 HOH B 48 353 99 HOH HOH . F 3 HOH B 49 354 100 HOH HOH . F 3 HOH B 50 355 101 HOH HOH . F 3 HOH B 51 356 104 HOH HOH . F 3 HOH B 52 357 105 HOH HOH . F 3 HOH B 53 358 106 HOH HOH . F 3 HOH B 54 359 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F1X . . . D 2 5.458 -17.041 -0.52 1 24.45 ? C1 F1X 1 B 1 HETATM 2 O O1 F1X . . . D 2 5.062 -16.317 -1.676 1 21.02 ? O1 F1X 1 B 1 HETATM 3 P P1 F1X . . . D 2 3.883 -16.898 -2.604 1 30.9 ? P1 F1X 1 B 1 HETATM 4 C C2 F1X . . . D 2 6.718 -17.853 -0.795 1 29.17 ? C2 F1X 1 B 1 HETATM 5 O O2 F1X . . . D 2 6.659 -18.477 -2.083 1 24.17 ? O2 F1X 1 B 1 HETATM 6 C C3 F1X . . . D 2 6.882 -18.943 0.261 1 27.52 ? C3 F1X 1 B 1 HETATM 7 O O3 F1X . . . D 2 6.077 -20.096 0.01 1 29.35 ? O3 F1X 1 B 1 HETATM 8 C C4 F1X . . . D 2 8.366 -19.177 0.182 1 28.58 ? C4 F1X 1 B 1 HETATM 9 O O4 F1X . . . D 2 8.906 -19.917 1.274 1 30.19 ? O4 F1X 1 B 1 HETATM 10 C C5 F1X . . . D 2 8.724 -17.708 0.265 1 33.23 ? C5 F1X 1 B 1 HETATM 11 O O5 F1X . . . D 2 7.905 -17.052 -0.714 1 28.35 ? O5 F1X 1 B 1 HETATM 12 C C6 F1X . . . D 2 10.214 -17.449 0.195 1 37.57 ? C6 F1X 1 B 1 HETATM 13 O O6 F1X . . . D 2 10.602 -17.434 1.57 1 35.44 ? O6 F1X 1 B 1 HETATM 14 O O1P F1X . . . D 2 4.368 -18.271 -3.005 1 27.39 ? O1P F1X 1 B 1 HETATM 15 O O2P F1X . . . D 2 2.655 -16.916 -1.725 1 25.81 ? O2P F1X 1 B 1 HETATM 16 O O3P F1X . . . D 2 3.815 -15.901 -3.733 1 33.36 ? O3P F1X 1 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #