data_3O7L # _model_server_result.job_id HeWU-rWDlfJXXyGC_irdtg _model_server_result.datetime_utc '2025-03-11 10:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":353}' # _entry.id 3O7L # _exptl.entry_id 3O7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3O7L _cell.length_a 92.193 _cell.length_b 92.193 _cell.length_c 192.186 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 B TRP 196 1_555 A N TPO 197 B TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 197 B TPO 197 1_555 A N LEU 198 B LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C TRP 196 D TRP 196 1_555 B N TPO 197 D TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C TPO 197 D TPO 197 1_555 B N LEU 198 D LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 B C VAL 337 D VAL 337 1_555 B N SEP 338 D SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C SEP 338 D SEP 338 1_555 B N ILE 339 D ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 184 B ASP 184 1_555 D MG MG . B MG 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc2 A OD2 ASP 184 B ASP 184 1_555 E MG MG . B MG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc3 D MG MG . B MG 351 1_555 G O1B ANP . B ANP 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 E MG MG . B MG 352 1_555 G O2A ANP . B ANP 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc5 E MG MG . B MG 352 1_555 G O1B ANP . B ANP 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 287 n n C1 C2 PEG sing 288 n n C1 H11 PEG sing 289 n n C1 H12 PEG sing 290 n n O1 HO1 PEG sing 291 n n C2 O2 PEG sing 292 n n C2 H21 PEG sing 293 n n C2 H22 PEG sing 294 n n O2 C3 PEG sing 295 n n C3 C4 PEG sing 296 n n C3 H31 PEG sing 297 n n C3 H32 PEG sing 298 n n C4 O4 PEG sing 299 n n C4 H41 PEG sing 300 n n C4 H42 PEG sing 301 n n O4 HO4 PEG sing 302 n n # _atom_sites.entry_id 3O7L _atom_sites.fract_transf_matrix[1][1] 0.010847 _atom_sites.fract_transf_matrix[1][2] 0.006262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG B 1 351 2 MG MG . E 4 MG B 1 352 3 MG MG . F 5 PEG B 1 353 1 PEG PEG . G 6 ANP B 1 354 1 ANP ANP . H 7 HOH B 1 355 5 HOH HOH . H 7 HOH B 2 356 7 HOH HOH . H 7 HOH B 3 357 8 HOH HOH . H 7 HOH B 4 358 11 HOH HOH . H 7 HOH B 5 359 12 HOH HOH . H 7 HOH B 6 360 13 HOH HOH . H 7 HOH B 7 361 14 HOH HOH . H 7 HOH B 8 362 19 HOH HOH . H 7 HOH B 9 363 35 HOH HOH . H 7 HOH B 10 364 36 HOH HOH . H 7 HOH B 11 365 37 HOH HOH . H 7 HOH B 12 366 42 HOH HOH . I 7 HOH D 1 351 17 HOH HOH . I 7 HOH D 2 352 21 HOH HOH . I 7 HOH D 3 353 24 HOH HOH . I 7 HOH D 4 354 25 HOH HOH . I 7 HOH D 5 355 39 HOH HOH . I 7 HOH D 6 356 40 HOH HOH . I 7 HOH D 7 357 41 HOH HOH . I 7 HOH D 8 358 43 HOH HOH . I 7 HOH D 9 359 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 5 1.35 17.6 8.093 1 2 ? C1 PEG 353 B 1 HETATM 2 O O1 PEG . . . F 5 1.537 19.034 7.82 1 2 ? O1 PEG 353 B 1 HETATM 3 C C2 PEG . . . F 5 -0.203 17.514 7.756 1 2 ? C2 PEG 353 B 1 HETATM 4 O O2 PEG . . . F 5 0.229 16.779 6.526 1 2 ? O2 PEG 353 B 1 HETATM 5 C C3 PEG . . . F 5 -0.92 15.947 6.061 1 2 ? C3 PEG 353 B 1 HETATM 6 C C4 PEG . . . F 5 -0.979 15.915 4.463 1 2 ? C4 PEG 353 B 1 HETATM 7 O O4 PEG . . . F 5 -1.922 14.776 4.04 1 2 ? O4 PEG 353 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #